Clone BO30984 Report

Search the DGRC for BO30984

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:309
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptRpS3A-RB
Protein status:BO30984.pep: Imported from assembly
Sequenced Size:688

Clone Sequence Records

BO30984.complete Sequence

688 bp assembled on 2012-03-19

GenBank Submission: KX794214

> BO30984.complete
GAAGTTATCAAGGGACATGTCAAAGCTCCGAATATGTTTCAAACCCGTCA
AATCGGGTCGCGTTTTCGAAGTGTCTTTAGCAGACTTGCAAAAGGATATT
GATCCAGAACGTTCTTTTCGCAAGTTCCGTCTTATTGCAGAAGATGTTCA
AGACCGTAATGTGCTCTGTAACTTTCACGGAATGGACTTGACTACGGACA
AGTACAGGTCGATGGTTAAAAAGTGGCAAACACTAATTGAAGCTATTGTC
GAAGCAAAGACTGTAGATGGGTACCTCTTGCGAGTGTTTTGTATCGGATT
TACTGCCAAGGATCAGCAGTCTCAGCGCAAAACATGTTATGCTCAGCAAT
CGCAAGTCCGAAAGATTCGTGCTCGCATGACCGACATTATTACTAATGAA
GTTAGTGGTGCCGATCTAAAGCAGCTTGTTAACAAGCTGGCCTTGGACTC
GATTGCGAAAGATATCGAAAAAAGCTGTCAGCGCATATATCCATTACATG
ATGTTTACATTCGTAAAGTAAAGGTATTGAAGAAACCGCGCTTCGATGTC
TCAAAGCTTCTGGAATTGCATGGCGATGGCGGTGGCAAATCCGTGGAAGC
CGTTGTTTCATCCGAGGGAGCCGTAATCGACCGCCCTGAAGGTTATGAGC
CCCCAGTACAGGAAGCTGTTGCAAGCTTTCTAGACCAT

BO30984.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3A-RB 657 CG2168-PB 1..654 17..670 3270 100 Plus
RpS3A-RF 807 CG2168-PF 189..804 55..670 3080 100 Plus
RpS3A-RA 807 CG2168-PA 189..804 55..670 3080 100 Plus
RpS3A-RF 807 CG2168-PF 95..134 17..56 200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3A-RB 854 CG2168-RB 122..775 17..670 3270 100 Plus
RpS3A-RF 1349 CG2168-RF 216..831 55..670 3080 100 Plus
RpS3A-RA 910 CG2168-RA 216..831 55..670 3080 100 Plus
RpS3A-RF 1349 CG2168-RF 122..161 17..56 200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 66276..66740 670..206 2325 100 Minus
4 1348131 4 66838..66992 209..55 775 100 Minus
4 1348131 4 67047..67086 56..17 200 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:06:11 has no hits.

BO30984.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 11:49:26 Download gff for BO30984.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RB 152..805 17..672 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:48 Download gff for BO30984.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RB 122..775 17..672 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:19:38 Download gff for BO30984.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RB 122..775 17..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:19:38 Download gff for BO30984.complete
Subject Subject Range Query Range Percent Splice Strand
4 67048..67086 17..55 100   Minus
4 66274..66738 208..672 99 <- Minus
4 66840..66991 56..207 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:48 Download gff for BO30984.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 87674..87712 17..55 100   Minus
arm_4 86900..87364 208..672 99 <- Minus
arm_4 87466..87617 56..207 100 <- Minus

BO30984.pep Sequence

Translation from 16 to 688

> BO30984.pep
MSKLRICFKPVKSGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVL
CNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQ
QSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDI
EKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSE
GAVIDRPEGYEPPVQEAVASFLDH

BO30984.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3A-PB 218 CG2168-PB 1..218 1..218 1110 100 Plus
RpS3A-PF 268 CG2168-PF 64..268 14..218 1043 100 Plus
RpS3A-PA 268 CG2168-PA 64..268 14..218 1043 100 Plus