BO30985.complete Sequence
1306 bp assembled on 2012-03-19
GenBank Submission: KX797267
> BO30985.complete
GAAGTTATCAGTCGACATGTCCGACGACGACTGCGATATATTCAGTGCTG
CTCGCAAGCGGATTCCCGAAATAGCTTTGCCCAAGAATCCTTACAATCTT
GGCAATGATTCCTTCTCCAAGGAGGTGGACTACGATTTCATTGAAGACCT
CCCCAAGAAATCAACTAAAACTGGCAAACGAAAGAACCCTGCAGCGACGC
GGAAAAATCCACCCAAAAGTCAGGATGATGCTTCGCCACCAAAACAGGCA
GAACATAAGGCTGTGGAGCCAGAAGAGGATATGAGAACAGAGCGCTCCCT
ATCACCGGTATCCCTGTTGATATTGGAGATGGAAAAGAAAAATGGCCAGC
AATCGGATGTGGAGAAGCACGCCAAAGAAAATGACGTTGGTCCTGTGGCC
AGACGCACACGGTCATCGTTAAATAGGTCAGAAATGGCGCCACCACCTGT
TTCACCGACTGTGGAGGTGCCCACACAGACGAAACCAAAGAAGCGCGGCC
AAAAAAAGAGAACATCTCTAACAACCACAACCAGCAACTCTGCTTCGATG
GAGGTCTCATTGCCAAGCATTGTAGGTCAGAACAATGAGCACATTAGCAG
ACGGTGGACGTTGGCCGAAGTTGCAGCCCGTTCCAAAGTGGTGGACAGTA
TTGATCTGGTATCTGCGGTCGCTCCCCGAGTGGAGGGATTTGTTAATCTA
GACTCTGAAGACGAGGGTGAAAAGGAGGCTCCTCCTGTCGTAGAGGAAGA
AAATATTTTTGATAACGATAATCCCACAATAGAAGTAGCTTTGTCGTGGC
TTGGCGAGATCCAGATTTATAAATTGCGGCAGCACCAAAAGTTTAAGCAT
CTGTTCAAGGAGTTAGCATCACGCAATGGGATAGATGAGAATGATATAAC
GGTGGATATGTACTATAACTTCGTTGGACCTGAGGATACGCCGCACAGCA
TTGGTCTCAAATCATTTCATACGCTCACTGGCCATCCAACAAAGAGTCAC
AATAATAACAACGTGGCTGCTAAAATTGACTACAATCCAGAAGCTCTTTG
CCGGAAACCTAAGAAGTTTCAAGTTAAAGTACAGGCGGATAAATGGAAGC
ATCCTTTGGTGATACCCATGAAGAAAACTGATAATTTCAAAATCATATTT
ATTAAGTGTGCTGAGGAGTTGAACTGTGATCCCCGAACCATTAAATTGTT
TTTTGACGGTGACTTGTTGGATCCAAATGATACGCCCAATAACCAGGATA
TGGAGGGCAACGAAGTTATAGATCTTAAAATAAAGGCTGCAAGCTTTCTA
GACCAT
BO30985.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4449-RD | 1275 | CG4449-PD | 1..1272 | 17..1288 | 6360 | 100 | Plus |
CG4449-RA | 1275 | CG4449-PA | 1..1272 | 17..1288 | 6360 | 100 | Plus |
CG4449-RE | 1272 | CG4449-PE | 1..1269 | 17..1288 | 6280 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4449-RD | 1500 | CG4449-RD | 77..1348 | 17..1288 | 6360 | 100 | Plus |
CG4449-RA | 1677 | CG4449-RA | 254..1525 | 17..1288 | 6360 | 100 | Plus |
CG4449-RE | 1497 | CG4449-RE | 77..1345 | 17..1288 | 6280 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23250600..23251104 | 577..73 | 2525 | 100 | Minus |
3R | 32079331 | 3R | 23249741..23249963 | 1200..978 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 23250023..23250202 | 977..798 | 900 | 100 | Minus |
3R | 32079331 | 3R | 23250425..23250540 | 693..578 | 580 | 100 | Minus |
3R | 32079331 | 3R | 23250256..23250363 | 799..692 | 540 | 100 | Minus |
3R | 32079331 | 3R | 23249595..23249682 | 1288..1201 | 440 | 100 | Minus |
3R | 32079331 | 3R | 23251167..23251224 | 74..17 | 290 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 1417..1463 | 744..791 | 111 | 72.9 | Plus |
Stalker | 7256 | Stalker STALKER 7256bp | 1309..1355 | 744..791 | 111 | 72.9 | Plus |
BO30985.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 11:54:39 Download gff for
BO30985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4449-RA | 254..1525 | 17..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:10 Download gff for
BO30985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4449-RA | 254..1525 | 17..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:19:59 Download gff for
BO30985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4449-RA | 254..1525 | 17..1290 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:19:59 Download gff for
BO30985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23249593..23249682 | 1201..1290 | 97 | <- | Minus |
3R | 23249741..23249963 | 978..1200 | 100 | <- | Minus |
3R | 23250023..23250201 | 799..977 | 100 | <- | Minus |
3R | 23250257..23250363 | 692..798 | 100 | <- | Minus |
3R | 23250427..23250540 | 578..691 | 100 | <- | Minus |
3R | 23250600..23251102 | 75..577 | 100 | <- | Minus |
3R | 23251167..23251224 | 17..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:10 Download gff for
BO30985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19075315..19075404 | 1201..1290 | 97 | <- | Minus |
arm_3R | 19075463..19075685 | 978..1200 | 100 | <- | Minus |
arm_3R | 19075745..19075923 | 799..977 | 100 | <- | Minus |
arm_3R | 19075979..19076085 | 692..798 | 100 | <- | Minus |
arm_3R | 19076149..19076262 | 578..691 | 100 | <- | Minus |
arm_3R | 19076322..19076824 | 75..577 | 100 | <- | Minus |
arm_3R | 19076889..19076946 | 17..74 | 100 | | Minus |
BO30985.pep Sequence
Translation from 16 to 1306
> BO30985.pep
MSDDDCDIFSAARKRIPEIALPKNPYNLGNDSFSKEVDYDFIEDLPKKST
KTGKRKNPAATRKNPPKSQDDASPPKQAEHKAVEPEEDMRTERSLSPVSL
LILEMEKKNGQQSDVEKHAKENDVGPVARRTRSSLNRSEMAPPPVSPTVE
VPTQTKPKKRGQKKRTSLTTTTSNSASMEVSLPSIVGQNNEHISRRWTLA
EVAARSKVVDSIDLVSAVAPRVEGFVNLDSEDEGEKEAPPVVEEENIFDN
DNPTIEVALSWLGEIQIYKLRQHQKFKHLFKELASRNGIDENDITVDMYY
NFVGPEDTPHSIGLKSFHTLTGHPTKSHNNNNVAAKIDYNPEALCRKPKK
FQVKVQADKWKHPLVIPMKKTDNFKIIFIKCAEELNCDPRTIKLFFDGDL
LDPNDTPNNQDMEGNEVIDLKIKAASFLDH
BO30985.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:59:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4449-PD | 424 | CG4449-PD | 1..424 | 1..424 | 2218 | 100 | Plus |
CG4449-PA | 424 | CG4449-PA | 1..424 | 1..424 | 2218 | 100 | Plus |
CG4449-PE | 423 | CG4449-PE | 1..423 | 1..424 | 2201 | 99.8 | Plus |
CG4449-PC | 422 | CG4449-PC | 1..422 | 1..424 | 2195 | 99.5 | Plus |
CG4449-PB | 422 | CG4449-PB | 1..422 | 1..424 | 2195 | 99.5 | Plus |