BO31011.complete Sequence
1528 bp assembled on 2012-05-10
GenBank Submission: KX793831
> BO31011.complete
GAAGTTATCAGTCGACATGGCGCCCTTCTACAAGCGCATCTGCCGCAGTC
TTTCCAAGCGCTACAAGGAGCCCTCGTTAAGTCTGGACAATACAGTCGAG
ACGCTGCTAATCAAGAATGAGGGGGACTTCATCAGCGTGGAGCAGGGCAA
GGAGCTGGTGGCTCGCAAGCGCAACTCCCAGCAGCTGGCACATCCGCCGG
CCCACTTGCATCACCACACCCAGAACCACGCCCACAATCATCACACTCTC
CAGCAGCAGCAGCATCAGCAGCAGCAGCAACAACAACACAAGCGGGACGA
GAATATGAGGCAGCTCCTGGATGTGACCAACACGCTCACCATTGAGGAGC
TGCGCGATTTTCAGATGCGATATGGCTCACCACATCACAGCCGCTCGCAA
TCGGTGAAGATGCCCGGCAGCAGAGCATCCGGAAGGCCAAATCAGCTGTG
TCTGCCCCAGCAGAGATCCAGGGTGGCTTCCATGCCGAATACAGGAGTAG
AGGAGGAGTACTACAGACTGCGTCACTTCTCGATCACCGGCAAGGGTGTG
GTAAATCGCGGTGATTCCCTCAAGAGCCGACGCAGTCGCTCCAACAACAG
CGTGGCCAGTTCCAATTCCAGCACGGAGCACCTGACCACCCAGCAGCAGC
TTTCCGCCCCCGCATCCGTATCCGCTCGAACTTCGCTGGCTTCCAGCAGG
GAGAGCAGTACATCCAATCCGGGCAACGGTCCCTACAGGGTCCTGATGCT
GGGAGGTCCTGCGGTGGGCAAGAGTTCGCTCGTCTCGCAGTTCATGACGT
CGGAGTACCTGCACGCCTACGACACGAGCATCGATGATGAGTCCGGCGAG
AAGGCCGTTTCAGTATTACTCAGTGGCGAAGAGTCCGAGCTGATTTTCAT
CGACCATGGATACACCGAAATGACTCCGGATGAGTGCCTGACCAACTACG
ATCCGCACGGTTACTGCGTCATCTATTCGGCCGCGGACAGGAGCAGCTTC
AGTGTGGCGGAGCAGGTGCTGCAGGTGCTCTGGACCAATCAGAACATCGC
CCAGAAGGCAGTCATTCTAGTATCGAACAAGGCCGACCTGGCCAGGAGTC
GACTGGTCACCTCTGAAGAGGGCAAGGCCATGGCCACCGCCTACGATTGT
AAATTCATCGAGACGTCGGTGGGCATTAATCACAATGTGGACGAGCTGCT
GGTGGGTCTGTTATCACAGATACGACTCAAGCTGGAGAATCCCGAAAAGT
CCAGGGATCTGTTCCGAAAGCGTTCGATTCGAAAGTCAAAGAGACGCGCC
TGCTCGCCACTGAATGCCGGATGCCTGAATGCCAATACCCCTCTGGGTCC
GCTGGGGGAGGCGGTGGCCACGCCCCCGGGCAGTGCCCAAAGCAGTCCCC
GCAAATACCGTGGATCAAGGACCTCCACCAGCCTGAAAGTCAAGGGACTT
TTGGGCCGCGTGTGGACTCGGGACTCCAAGTCGAAGAGCTGCGAGAATCT
GCATGTACTCGCAAGCTTTCTAGACCAT
BO31011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:55:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rgk1-RA | 1497 | CG44011-PA | 1..1494 | 17..1510 | 7470 | 100 | Plus |
| Rgk1-RB | 4140 | CG44011-PB | 2696..4137 | 69..1510 | 7210 | 100 | Plus |
| Rgk1-RC | 1545 | CG44011-PC | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rgk1-RA | 1946 | CG44011-RA | 246..1739 | 17..1510 | 7470 | 100 | Plus |
| Rgk1-RB | 5443 | CG44011-RB | 3795..5236 | 69..1510 | 7210 | 100 | Plus |
| Rgk1-RC | 3239 | CG44011-RC | 246..1064 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19319383..19319688 | 374..69 | 1515 | 99.7 | Minus |
| 2R | 25286936 | 2R | 19318072..19318341 | 739..470 | 1350 | 100 | Minus |
| 2R | 25286936 | 2R | 19314561..19314753 | 1118..926 | 965 | 100 | Minus |
| 2R | 25286936 | 2R | 19312785..19312928 | 1395..1252 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 19312994..19313132 | 1255..1117 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 19312600..19312718 | 1510..1392 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 19318398..19318501 | 472..369 | 520 | 100 | Minus |
| 2R | 25286936 | 2R | 19317538..19317639 | 837..736 | 495 | 99 | Minus |
| 2R | 25286936 | 2R | 19315247..19315339 | 925..833 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 19325198..19325251 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:55:40 has no hits.
BO31011.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-10 10:04:41 Download gff for
BO31011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgk1-RB | 239..1732 | 17..1512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:21 Download gff for
BO31011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgk1-RA | 246..1739 | 17..1512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:01 Download gff for
BO31011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgk1-RA | 246..1739 | 17..1512 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:01 Download gff for
BO31011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19319388..19319686 | 71..369 | 100 | <- | Minus |
| 2R | 19325198..19325251 | 17..70 | 100 | | Minus |
| 2R | 19312598..19312714 | 1396..1512 | 98 | <- | Minus |
| 2R | 19312785..19312925 | 1255..1395 | 100 | <- | Minus |
| 2R | 19312995..19313130 | 1119..1254 | 100 | <- | Minus |
| 2R | 19314561..19314753 | 926..1118 | 100 | <- | Minus |
| 2R | 19315247..19315338 | 834..925 | 100 | <- | Minus |
| 2R | 19317542..19317636 | 739..833 | 100 | <- | Minus |
| 2R | 19318073..19318339 | 472..738 | 100 | <- | Minus |
| 2R | 19318399..19318500 | 370..471 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:21 Download gff for
BO31011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15202752..15202843 | 834..925 | 100 | <- | Minus |
| arm_2R | 15205047..15205141 | 739..833 | 100 | <- | Minus |
| arm_2R | 15200103..15200219 | 1396..1512 | 98 | <- | Minus |
| arm_2R | 15200290..15200430 | 1255..1395 | 100 | <- | Minus |
| arm_2R | 15200500..15200635 | 1119..1254 | 100 | <- | Minus |
| arm_2R | 15202066..15202258 | 926..1118 | 100 | <- | Minus |
| arm_2R | 15205578..15205844 | 472..738 | 100 | <- | Minus |
| arm_2R | 15205904..15206005 | 370..471 | 100 | <- | Minus |
| arm_2R | 15206893..15207191 | 71..369 | 100 | <- | Minus |
| arm_2R | 15212703..15212756 | 17..70 | 100 | | Minus |
BO31011.pep Sequence
Translation from 16 to 1528
> BO31011.pep
MAPFYKRICRSLSKRYKEPSLSLDNTVETLLIKNEGDFISVEQGKELVAR
KRNSQQLAHPPAHLHHHTQNHAHNHHTLQQQQHQQQQQQQHKRDENMRQL
LDVTNTLTIEELRDFQMRYGSPHHSRSQSVKMPGSRASGRPNQLCLPQQR
SRVASMPNTGVEEEYYRLRHFSITGKGVVNRGDSLKSRRSRSNNSVASSN
SSTEHLTTQQQLSAPASVSARTSLASSRESSTSNPGNGPYRVLMLGGPAV
GKSSLVSQFMTSEYLHAYDTSIDDESGEKAVSVLLSGEESELIFIDHGYT
EMTPDECLTNYDPHGYCVIYSAADRSSFSVAEQVLQVLWTNQNIAQKAVI
LVSNKADLARSRLVTSEEGKAMATAYDCKFIETSVGINHNVDELLVGLLS
QIRLKLENPEKSRDLFRKRSIRKSKRRACSPLNAGCLNANTPLGPLGEAV
ATPPGSAQSSPRKYRGSRTSTSLKVKGLLGRVWTRDSKSKSCENLHVLAS
FLDH
BO31011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rgk1-PA | 498 | CG44011-PA | 1..498 | 1..498 | 2558 | 100 | Plus |
| Rgk1-PC | 514 | CG44011-PC | 1..514 | 1..498 | 2531 | 96.9 | Plus |
| Rgk1-PB | 1379 | CG44011-PB | 898..1379 | 17..498 | 2465 | 99.6 | Plus |
| Rgk2-PA | 740 | CG34390-PA | 431..740 | 150..498 | 692 | 46.5 | Plus |
| Rgk2-PC | 742 | CG34390-PC | 431..742 | 150..498 | 679 | 46.2 | Plus |
