BO31014.complete Sequence
2659 bp assembled on 2012-04-11
GenBank Submission: KX793839
> BO31014.complete
GAAGTTATCAGTCGACATGAAATGCTGGCACAATGTGGTGAGGCGCAGAA
GGAAGAAGCCGACGGCAGCGGCGGCGGCGAAAGGATCAAAGGGGTCGCAT
GGAGGCGTGGCAAGTCCTCGAGATGAAGATGCCATCTGCCAGCGGCAGCA
ACAAGTGGATACCTACACTTGGCTAACAACACAAGCTGTCCCTCTGCTGT
GGCTGCACTTGTTGCTCCTTGTCGCATTTGCAAAACATGCGGCTGCAGCC
ACAACAATTGCCACAAATCCCGAGGCCACCACAACAACGGTGAGCAACTA
CACGGTGACGACCACGGCACTATCATCATCCACGACAACCACTTCATCGG
GATCAGCTCCAGCTTTATCATCTGCGGCGGATAAGTTCGCCGGCAACTGG
GCCAACTTGGAGGATTCGTTCCGGAATATCGTGCGGATTGGTGATGGGAA
CACGGTGACACGGACGTCCATTGAACAATCGCTGGTGACGATACACGACA
TTGCCACCGAGAACTTGGGGACATTGTGCATCTCGACCCTATATCGCCCC
CTACAAGTGCCCATCAACTCGGAACGATATGAGAGCTCTAGACAGAAAAC
CGATTTGGCCGCCTCGATACTCCAGGAAGTGGGCATCATTCGGCACGGCG
GACTGTCGGATGCTTTAGCCAAAGGCCTGCTAACCGATGACTTTATAACT
GGAGCCCGCATTTTGGCCCTGAATCTAACGAATGGAGCGGTCCAGTCCTA
CGTCTGGTGGGTCAAGGGAACAGCGGCGGAAATCCAGCGGTACGACGAGG
ACGGACTGCAGATTGGCAAAAAGCCCGCTGGCAGTTATCCCTGGTTCGAC
GATGAAACATCCTCACCCACCTTGCGTTCGCCCAAATTCGCGCCCAGTCC
GCCCAACAACTACTACAAGGGCTGGTGGACATATCCCTACTTCTCGTGCT
CGCAGAGCCGCTGGCTGGTGTCCTACAGCATTGCCATTCCGCCGATTGGG
CGCCATGGGTTAAGGGGCTTCATCAGCATCGACATTGATGTGTCCACGCT
GCGGGTTAACCAATGCGAGGCGGAGCCCTATCCATTTGGCAGTCGCCGGC
AGAAAATGCAGCAACTGCAGACGCACAATCGTTTGGGGGCACGAAGATCC
TTGTTTTTGGGCAGCCGAATGGGGGCCATCGATGAGAGCACCATCAACGA
TTTGCAGGCATTCCACAGCTCCCACAAGTGTCATCGCACCTCAATGGTGT
GTGATTACCGTCAGCCAAGTGCGGAGACTCCTACCGTAACTGGTGGCAAA
TTGCTGACCACGCTGACCGGAAGCAGCAGCTGGACTCGTGGATCGTACCA
GTGCCTCTGCCGCGGGGGATTCTACTCGCTGCGGCATCCGGACGGATTCA
ACGGCACCATCATGGAGATTGCCTGGCAGGAGCAGCAGGACAACATAAGC
AATTACTATTCCGAGGTTTTTAAGTGTTTGCCCTGCGCCCCCGGCTGCGA
CACGTGCACGGGTCCGGAGCCATGTTTGGCCAACTACCACTGGCCATTCA
GAATATCCCTGTTGACCATATCCATTGGCTGTGCCTGCGGCACCTTCGTT
CTCGCCGGCTATCTCTTTCGGCATCGTCGCGTGAAGGTCTTCAAGGTGGC
CAGCCCCATCTTTCTGATGATCACGCTCATCGGCTGCGCCATCATGTATC
TGGAGATGGTAGCTATCTTTCCCTATCTGGATACCACTTGGTGTATTGCC
ACTAAATGGACGCGGCATATGGGTTTTTGCATCACCTACACTTCGCTGCT
TATGAAAACCTGGCGGGTTTCTTTAACGTATCGTGTCAAGTCGGCCCACA
AAATAAAACTGAATGATCAGCAGCTTTTGCAGTGGATGGTGCCCATTCTG
TTGGTTATGTTGATCTACTTGGGCACATGGACGATTTCGGCAACGCCCAC
AGCAGAAGTGATCTTAGATCAGAGTCAGTTGAAGTTCAAGCAGTGCTCGT
ACAACTGGTGGGATCACAGTTTGGCCATCGGAGAAGTGTTCTTCCTGGCC
TGGGGCATCCGGGTTTGCTACAATGTGCGAAATGCGGAGAGTCTGTACAA
CGAGGCCCGGCTCATCTCCTACGCCATCTACAACATAGCCCTCGTCAATA
TCGCCATGGTGGTGTTCCATGTAATGCTCTTTCCGAACGCCGGACCCGAT
TATAAGTATATGCTGGGATTTGTGCGCACCCAGCTTTCCACGACCACCAC
CATTGCCCTCGTCTTCGGTCCAAAGATTTTGCGTGTCTTTAAGGGCCAAG
GCGACAAGTGGGATCAGAAGGCCAAGGTGCGGAGCATAACAGCATCATTC
TCGCTAAATGGAGTGGGTCTGGTCCCGGAGGAGTCGCCTGATCTTTACCA
GGAGAACGAAGAACTCAAGGAACAAGTCCAGAAACTGGCCCACCAAATCG
AGTTCATGAAGACTGTGCACATGCAGATGAACAACAGGCATCTGAAGCCA
AAGCCCGGCGGATATTTTACCATAACTTCAACCTCGTTTCAAGCGCCATA
TAGCAAAAACACGGTTTCCACAGCGCAGACGCAAACGGGCAAGGATGAGA
ACAGCACGCCAACGAAATTAAAATCGCCCAAAGGCAAAGTCGCAAGCTTT
CTAGACCAT
BO31014.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31760-RD | 2628 | CG31760-PD | 1..2625 | 17..2641 | 13125 | 100 | Plus |
| CG31760-RC | 3282 | CG31760-PC | 1..2625 | 17..2641 | 13125 | 100 | Plus |
| CG31760-RB | 2628 | CG31760-PB | 1..2625 | 17..2641 | 13125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31760-RD | 4647 | CG31760-RD | 239..2863 | 17..2641 | 13125 | 100 | Plus |
| CG31760-RC | 4411 | CG31760-RC | 294..2918 | 17..2641 | 13125 | 100 | Plus |
| CG31760-RB | 4389 | CG31760-RB | 272..2896 | 17..2641 | 13125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:46:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12153528..12153974 | 17..463 | 2235 | 100 | Plus |
| 2L | 23513712 | 2L | 12161244..12161650 | 843..1249 | 2035 | 100 | Plus |
| 2L | 23513712 | 2L | 12162739..12163041 | 1249..1551 | 1515 | 100 | Plus |
| 2L | 23513712 | 2L | 12168120..12168370 | 2170..2420 | 1255 | 100 | Plus |
| 2L | 23513712 | 2L | 12167112..12167321 | 1960..2169 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 12160689..12160884 | 650..845 | 980 | 100 | Plus |
| 2L | 23513712 | 2L | 12155471..12155659 | 463..651 | 945 | 100 | Plus |
| 2L | 23513712 | 2L | 12168422..12168612 | 2414..2604 | 940 | 99.5 | Plus |
| 2L | 23513712 | 2L | 12163455..12163610 | 1550..1705 | 780 | 100 | Plus |
| 2L | 23513712 | 2L | 12166897..12167042 | 1815..1960 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 12166725..12166837 | 1704..1816 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 12168686..12168724 | 2603..2641 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:46:24 has no hits.
BO31014.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:44 Download gff for
BO31014.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31760-RB | 268..2892 | 17..2643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:03 Download gff for
BO31014.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31760-RB | 272..2896 | 17..2643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:36:38 Download gff for
BO31014.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31760-RB | 272..2896 | 17..2643 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:36:38 Download gff for
BO31014.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12168120..12168369 | 2170..2419 | 100 | -> | Plus |
| 2L | 12168428..12168612 | 2420..2604 | 100 | -> | Plus |
| 2L | 12168688..12168724 | 2605..2643 | 94 | | Plus |
| 2L | 12167113..12167321 | 1961..2169 | 100 | -> | Plus |
| 2L | 12153528..12153974 | 17..463 | 100 | -> | Plus |
| 2L | 12155472..12155658 | 464..650 | 100 | -> | Plus |
| 2L | 12160690..12160882 | 651..843 | 100 | -> | Plus |
| 2L | 12161245..12161650 | 844..1249 | 100 | -> | Plus |
| 2L | 12162740..12163041 | 1250..1551 | 100 | -> | Plus |
| 2L | 12163457..12163610 | 1552..1705 | 100 | -> | Plus |
| 2L | 12166727..12166836 | 1706..1815 | 100 | -> | Plus |
| 2L | 12166898..12167042 | 1816..1960 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:03 Download gff for
BO31014.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12153528..12153974 | 17..463 | 100 | -> | Plus |
| arm_2L | 12155472..12155658 | 464..650 | 100 | -> | Plus |
| arm_2L | 12160690..12160882 | 651..843 | 100 | -> | Plus |
| arm_2L | 12161245..12161650 | 844..1249 | 100 | -> | Plus |
| arm_2L | 12162740..12163041 | 1250..1551 | 100 | -> | Plus |
| arm_2L | 12163457..12163610 | 1552..1705 | 100 | -> | Plus |
| arm_2L | 12166727..12166836 | 1706..1815 | 100 | -> | Plus |
| arm_2L | 12166898..12167042 | 1816..1960 | 100 | -> | Plus |
| arm_2L | 12167113..12167321 | 1961..2169 | 100 | -> | Plus |
| arm_2L | 12168120..12168369 | 2170..2419 | 100 | -> | Plus |
| arm_2L | 12168428..12168612 | 2420..2604 | 100 | -> | Plus |
| arm_2L | 12168688..12168724 | 2605..2643 | 94 | | Plus |
BO31014.pep Sequence
Translation from 16 to 2659
> BO31014.pep
MKCWHNVVRRRRKKPTAAAAAKGSKGSHGGVASPRDEDAICQRQQQVDTY
TWLTTQAVPLLWLHLLLLVAFAKHAAAATTIATNPEATTTTVSNYTVTTT
ALSSSTTTTSSGSAPALSSAADKFAGNWANLEDSFRNIVRIGDGNTVTRT
SIEQSLVTIHDIATENLGTLCISTLYRPLQVPINSERYESSRQKTDLAAS
ILQEVGIIRHGGLSDALAKGLLTDDFITGARILALNLTNGAVQSYVWWVK
GTAAEIQRYDEDGLQIGKKPAGSYPWFDDETSSPTLRSPKFAPSPPNNYY
KGWWTYPYFSCSQSRWLVSYSIAIPPIGRHGLRGFISIDIDVSTLRVNQC
EAEPYPFGSRRQKMQQLQTHNRLGARRSLFLGSRMGAIDESTINDLQAFH
SSHKCHRTSMVCDYRQPSAETPTVTGGKLLTTLTGSSSWTRGSYQCLCRG
GFYSLRHPDGFNGTIMEIAWQEQQDNISNYYSEVFKCLPCAPGCDTCTGP
EPCLANYHWPFRISLLTISIGCACGTFVLAGYLFRHRRVKVFKVASPIFL
MITLIGCAIMYLEMVAIFPYLDTTWCIATKWTRHMGFCITYTSLLMKTWR
VSLTYRVKSAHKIKLNDQQLLQWMVPILLVMLIYLGTWTISATPTAEVIL
DQSQLKFKQCSYNWWDHSLAIGEVFFLAWGIRVCYNVRNAESLYNEARLI
SYAIYNIALVNIAMVVFHVMLFPNAGPDYKYMLGFVRTQLSTTTTIALVF
GPKILRVFKGQGDKWDQKAKVRSITASFSLNGVGLVPEESPDLYQENEEL
KEQVQKLAHQIEFMKTVHMQMNNRHLKPKPGGYFTITSTSFQAPYSKNTV
STAQTQTGKDENSTPTKLKSPKGKVASFLDH
BO31014.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31760-PD | 875 | CG31760-PD | 1..875 | 1..875 | 4641 | 100 | Plus |
| CG31760-PC | 1093 | CG31760-PC | 1..875 | 1..875 | 4641 | 100 | Plus |
| CG31760-PB | 875 | CG31760-PB | 1..875 | 1..875 | 4641 | 100 | Plus |
| CG43795-PA | 1420 | CG43795-PA | 583..1063 | 299..812 | 612 | 29.6 | Plus |
| pog-PF | 926 | CG31660-PF | 424..850 | 387..832 | 348 | 24.7 | Plus |
