Clone BO31023 Report

Search the DGRC for BO31023

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:310
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG42747-RC
Protein status:BO31023.pep: Imported from assembly
Sequenced Size:1246

Clone Sequence Records

BO31023.complete Sequence

1246 bp assembled on 2012-03-09

GenBank Submission: KX796241

> BO31023.complete
GAAGTTATCAGTCGACATGGCGGACATTTACCAGGATGCCAGCACCACGC
TGCGCTCCGTGTTTCCCAACTCGCGGCTGGACTCGCTGGCCGGAGTGGAT
CGCCGGATGGAGAGTCAGCTGCCAGGACCACCGGATGCGGATGCAGTCAC
CACCGCCTCGAGCATTGGCTATAATCCGCTCAACGACGACGACTGGTGGG
CCAATGCCATCGAAGTGGACACCTTCGACTCACCGCTGGCCTTCGATGCT
AGCGAAAATGGTCTGTGGAACGGACACTTTGTGCCGCCGCCACCTCGCCC
GCCCTTCCTGGATGAAAGCGTCGCCGCCGACGGCCTGACCACCTGTGATC
TGTGCACGTGGGCATGGCAGCGGAATGCCTACTCCCTGGATGGTTCCATA
GAAACCGCCGGCGAACTTGGATGGGCATTCACCCTAATCATAGTTTCAAT
CATATCGGCTCTAATAGGTGCTATTGTAATGGTCATAGTTCTAAGATGTA
GAAGAATTAAATCAGCGAATGCCAATGGTGGCCGCCCGCAGCCTTGGTGG
TGTCGCAATAACCGAAACGGTGGCCAAAATCGATCGCCCATCTCGATCAA
GCACTCGGCGGACAGCATCCGGCGGCCCACGAGCAACTCCGGCGTTTGGA
CCTGGCTGGGCGGCAGTCGTCGCTCCTCCGCCGGTCCCGACCAGATCGGT
CCGCCGTCGACGTCGCCGGCGGAGAACCACTATACCCACATGGACGATGC
CTACAGTCCGGTGGGCGTGAGCGAGGCGCTCTACGCGGAACTGGATCGCG
AGTCCGTGCGATCCGCCAATCCCTCATATCAGAATACGGCCTACAGTCAG
TGTGGCGAGAAATACAATTACCAGGGCCACGAGCAGGACATTCCCATGGT
GGTCTCCTCGGCACCCAGCAGTGCTTACTATTCGGATCTGTCGGTGACCG
CGATGCCCGGCGGAGCGAGTGGCAGTAATCAGGGCGCCTACGAGATTGTC
GGACTGAACGTGATGTCCCAGCCGCTGCCCAACTGGGATCATCATGGCGG
AGGAGTGGGAGGTGGCGGTGTTGTGGCTGCAGGAGCAGCAGCCGCCATCC
TTGGAGGCGGTGGTGGTGGGGGCAATGGCCTTACGCCGGGCGAGGCTGCG
GCGATGACGCAACGACGAGGTCCTCGACTGGCGGCCATCAACGAGACGAG
CACCAGCACAGTGCCCTCGGACTATGTCGCAAGCTTTCTAGACCAT

BO31023.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG42747-RC 1215 CG42747-PC 1..1212 17..1228 6060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG42747-RC 2857 CG42747-RC 735..1946 17..1228 6060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6461666..6462050 17..401 1925 100 Plus
3L 28110227 3L 6484683..6485053 858..1228 1855 100 Plus
3L 28110227 3L 6484230..6484562 527..859 1665 100 Plus
3L 28110227 3L 6476541..6476645 400..504 525 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:06:07 has no hits.

BO31023.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-09 17:10:27 Download gff for BO31023.complete
Subject Subject Range Query Range Percent Splice Strand
CG42747-RC 733..1944 17..1230 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:08 Download gff for BO31023.complete
Subject Subject Range Query Range Percent Splice Strand
CG42747-RC 735..1946 17..1230 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:14 Download gff for BO31023.complete
Subject Subject Range Query Range Percent Splice Strand
CG42747-RC 735..1946 17..1230 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:14 Download gff for BO31023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6461666..6462050 17..401 100 -> Plus
3L 6476543..6476645 402..504 100 -> Plus
3L 6480295..6480317 505..527 100 -> Plus
3L 6484231..6484562 528..859 100 -> Plus
3L 6484685..6485053 860..1230 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:08 Download gff for BO31023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6454766..6455150 17..401 100 -> Plus
arm_3L 6469643..6469745 402..504 100 -> Plus
arm_3L 6473395..6473417 505..527 100 -> Plus
arm_3L 6477331..6477662 528..859 100 -> Plus
arm_3L 6477785..6478153 860..1230 99   Plus

BO31023.pep Sequence

Translation from 16 to 1246

> BO31023.pep
MADIYQDASTTLRSVFPNSRLDSLAGVDRRMESQLPGPPDADAVTTASSI
GYNPLNDDDWWANAIEVDTFDSPLAFDASENGLWNGHFVPPPPRPPFLDE
SVAADGLTTCDLCTWAWQRNAYSLDGSIETAGELGWAFTLIIVSIISALI
GAIVMVIVLRCRRIKSANANGGRPQPWWCRNNRNGGQNRSPISIKHSADS
IRRPTSNSGVWTWLGGSRRSSAGPDQIGPPSTSPAENHYTHMDDAYSPVG
VSEALYAELDRESVRSANPSYQNTAYSQCGEKYNYQGHEQDIPMVVSSAP
SSAYYSDLSVTAMPGGASGSNQGAYEIVGLNVMSQPLPNWDHHGGGVGGG
GVVAAGAAAAILGGGGGGGNGLTPGEAAAMTQRRGPRLAAINETSTSTVP
SDYVASFLDH

BO31023.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG42747-PC 404 CG42747-PC 1..404 1..404 2158 100 Plus
CG13300-PA 388 CG13300-PA 53..370 33..320 420 33.8 Plus