BO31057.complete Sequence
1039 bp assembled on 2012-03-09
GenBank Submission: KX794226
> BO31057.complete
GAAGTTATCAGTCGACATGGCTGTCTCGTTGATGTGGTTGTACATACGTA
TTCATAAGTGTGACATTCGTCCATTTGTGGTAGAGGGGAAACAAGTTGGT
CTTATTAAGTCAGATGTTTTAAAACATCTCGAAAAGTATCCTGAAGTATT
TTGCATTCGTGCTTGTGAGCAAACTAAACAGGGTTTGGTAGAGCTAAATC
CTGCTTTTCGTGACTATAACGAGCGCACTGAGCAACTGGAAAAGGTTTTG
CGTAACTTGCGCTCCGAGGGACTTTTTCCTGCATTACAGGGATGGAGAGA
TGAGTATTTCGAGGTAAAAGCAGACTGCAGAGCTCTACTTAAAATGGAAC
GAGCTGCTACTCCGCTCTTTGGAGTGCGCAAGTACGGCGTCGATATAAAC
GGTTACGTAAGACATCCGACGCTTGGACTATGCATTTGGCTGCAGCAGCG
GTCAAACACAAAAGAGACCTGGCCTGGAAAGTGGGACAATATGGTAGGCG
GTGGACTTTCAGTCGGCTTTGGTATTAAGGAAACAGCCATTAAGGAGGCT
GCAGAGGAGGCATCAATTCCTTCTGACCTAGTCAAGAATTTGGTGTCCGC
AGGATGTGTCTCATTTTACTTTGAAAGCCGACAAGGACTTTTTCCCAATA
CCGAATATGTTTTCGACTTAGAGCTACCGCTTGACTTTGTGCCTCAAAAC
GCTGACGGGGAGGTCCAGGCCTTTGAGCTGCTAACAGCCAAGGACTGTGT
GGAGCGCGTTTTTACTTCAGATTTCAAGACAACTTCAGCGCCTGTGGTGA
TTGATTTTCTTATCCGACACGGTCACATAACAGCAGATGATGTTGTCGAC
TTCACACAAATCGTTGAGCTCTTGCACGTGCCCTTACAGTCCATATATAC
GTACAAGACACGCTTTGAGCAATCCATAAAACAACCTCAATTCTTGCCAG
GTGATTCCAAAAACTGTAACTGTGCAATATTTCAGAAAATATCAATGGAG
AATGGGCACAAGAAGGCGAATGCAAGCTTTCTAGACCAT
BO31057.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12567-RD | 1008 | CG12567-PD | 1..1005 | 17..1021 | 5010 | 99.9 | Plus |
| CG12567-RG | 1050 | CG12567-PG | 74..1047 | 48..1021 | 4855 | 99.9 | Plus |
| CG12567-RF | 1026 | CG12567-PF | 50..1023 | 48..1021 | 4855 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12567-RD | 1875 | CG12567-RD | 32..1036 | 17..1021 | 5010 | 99.9 | Plus |
| CG12567-RG | 1907 | CG12567-RG | 95..1068 | 48..1021 | 4855 | 99.9 | Plus |
| CG12567-RF | 1885 | CG12567-RF | 73..1046 | 48..1021 | 4855 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 23162212..23162876 | 842..178 | 3310 | 99.8 | Minus |
| 2L | 23513712 | 2L | 23323955..23324192 | 842..605 | 1055 | 96.2 | Minus |
| 2L | 23513712 | 2L | 23415916..23416153 | 605..842 | 1055 | 96.2 | Plus |
| 2L | 23513712 | 2L | 23161961..23162140 | 1021..842 | 900 | 100 | Minus |
| 2L | 23513712 | 2L | 23162924..23163058 | 182..48 | 675 | 100 | Minus |
| 2L | 23513712 | 2L | 23320511..23320637 | 1021..895 | 560 | 96.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:09:05 has no hits.
BO31057.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-09 17:10:31 Download gff for
BO31057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RD | 32..1036 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:31 Download gff for
BO31057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RD | 32..1036 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:05:01 Download gff for
BO31057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RD | 32..1036 | 17..1023 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:05:01 Download gff for
BO31057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 23161959..23162139 | 843..1023 | 98 | <- | Minus |
| 2L | 23162212..23162872 | 182..842 | 99 | <- | Minus |
| 2L | 23162925..23163058 | 48..181 | 100 | <- | Minus |
| 2L | 23173892..23173922 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:31 Download gff for
BO31057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2LHet | 20470..20650 | 843..1023 | 98 | <- | Minus |
| 2LHet | 20723..21383 | 182..842 | 99 | <- | Minus |
| 2LHet | 21436..21569 | 48..181 | 100 | <- | Minus |
| 2LHet | 32403..32433 | 17..47 | 100 | | Minus |
BO31057.pep Sequence
Translation from 16 to 1039
> BO31057.pep
MAVSLMWLYIRIHKCDIRPFVVEGKQVGLIKSDVLKHLEKYPEVFCIRAC
EQTKQGLVELNPAFRDYNERTEQLEKVLRNLRSEGLFPALQGWRDEYFEV
KADCRALLKMERAATPLFGVRKYGVDINGYVRHPTLGLCIWLQQRSNTKE
TWPGKWDNMVGGGLSVGFGIKETAIKEAAEEASIPSDLVKNLVSAGCVSF
YFESRQGLFPNTEYVFDLELPLDFVPQNADGEVQAFELLTAKDCVERVFT
SDFKTTSAPVVIDFLIRHGHITADDVVDFTQIVELLHVPLQSIYTYKTRF
EQSIKQPQFLPGDSKNCNCAIFQKISMENGHKKANASFLDH
BO31057.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:52:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12567-PD | 335 | CG12567-PD | 1..335 | 1..335 | 1770 | 100 | Plus |
| CG12567-PF | 341 | CG12567-PF | 16..341 | 10..335 | 1714 | 99.4 | Plus |
| CG12567-PG | 349 | CG12567-PG | 26..349 | 12..335 | 1713 | 100 | Plus |
| CG12567-PA | 349 | CG12567-PA | 26..349 | 12..335 | 1713 | 100 | Plus |
| CG12567-PC | 70 | CG12567-PC | 26..69 | 12..55 | 236 | 100 | Plus |
