BO31116.complete Sequence
3538 bp assembled on 2012-04-06
GenBank Submission: KX796738
> BO31116.complete
GAAGTTATCAGTCGACATGCCGTCGTCAGCAATAAATAAAGCAGCACGCA
GTGTTGCCAATGCGATTCAATTGCTGGCAATCGTTCTCTATTGCTGCTGC
ATGGTGCATGGACAACAGCAGCAGCAGCAGCAGCAGCAGCTACAACCACA
ACAGCAGCAACACTTGAAGTACCAGCAATTGCAATACCAAATGCAGCAGC
AATATGAATACCAGCAGCAGCAGCACTACCAGCAGCAGTTTCAGCAGCAG
CAGCAGCAACAGCAGCAACAGCAGCAGCAGCTGCAACAGCAACAGCAGCA
GCAGCAACATCTGACACCCACGGCAGCACTTGCCCAGCAGCAGCAGCAGC
ATGAGGAGCAAATCGACTTGCTGTCCACTCAACCAACTCAGCTGCTGCAG
ACAGGTGTTTCCCTGATTGTGGAGGATTCAAAGGGCTCGGGCGATGGTAG
CGGAAGTGGAATTGGTGCCACATCCAACCGTCGTCGTACTGCTCAGTTGG
CAACTCGTAAGCGGAAACGACGCCCCCAACTTCCGCTGGCCACAATGGGG
GCCACGGAGGAGGATTCTGGTCCAGAACCGACATCAGCTTACTGGCGCGG
TCATGTGGAGGATGATGCAGACGCACTGCGAAGAAGGAATCAACCCTTGG
TGAGGGAACCCATGGCCGCTCTCGAAAGAGATCGCGAACGGGAGAAACAG
CGCAAGCGAGTAGAGCCCACGGATGCCAGTCCGCAGGGCAGTAGTCCCAG
CAAAGCCTATCGTCGCCCATATGGCCAGGCCAAAAAGGAACCCATTGTCG
ATGCTGGCGCTGCGACACCTACCAAAACTTCTGTGGATTTGAAGAACATC
CTGAAGAATTCCGGAGGTCTGAGTCTCAGTGAAATCCTGCAGCAGAAAAA
TCTTTCGTTGGACGATCTGCTCAAGGGTAAACAGAATGCTCTGTTGGCAC
TGCAAACCACAGCCGTTGCCCCACCAGCCTCCACGTATTCCTCCCCAGGC
TCACGAGCGGATCCCCCGAAAAAGCTGTCTAACCAACAGAACAAACAGGG
TGTGCGGAGATTGCCTGCTGCGTATACCACAACTAGCACCACTGGCAACG
ATGAGGATGAATCCGTGATAGCCAAAAACAAGGCCAAATTCCCTAACGCC
CTGCAGCGCCTTAAGCTCTTTGGCAGCTCTTCGCGGGAGAGCGGCACTAC
AAGACGCATTTTGGGTGGAGTCAATGGTCACAGTAGCACCACCATGGCCA
CCAGCACCACTGCAAGTGCAAGCGCCACTAGCACCACCACCCGGGTGCCA
CTCTACAAGAAGCGGCAGCATCTTCGGTCCACCCTAAAGCCACCAGGACT
TTTCAAGCCGATCACTAGCAGCACCACTAGCACCACCACAGCAACGGCAG
TGACCACCACTCAGGAAGTGGAAACTAGCACCGCTTACTCCTACTCCACT
AGCACCACGGTGGTTAATAACGTGGAGGAAAGTCGTGAGGAGGAGAGGGA
AAACTCGGAGGAAAGCGAACGGGAAGATGAGCAGGATCAGGAACAAAGTC
AGGAGAATCAGGAGAACCAGGAGGTGGTGGAACCCGATTCCAGTGAGGCA
GAGTCTGGAGAAGGCATTCCGCCCACCGAGACACCAGAACCACCAGCTGC
TCCTTCCTTTGCGCCCGGAAGTCCGCGCTATCGTCTGCGAAATTCCAGTG
TGAAAGAGAATCAAAAGCGATTAAAGGATAACTTTATAGGGAGCAATAAT
GGAGAGAGTAGTGAGGAGGTGGATCCGGTTGAGGCTTCACCTAGTTCTAC
CACATCAGCTACACCATCAAACAAAAACAGCGAAGAACTTAATTACGGAG
AGGACGAGCTGGAGAACTTTTTCGACGAAGTGGAGAGTCACACGCATCAC
ACTCGCGTGCCAGCACCACCAGCACTTGCGCCTGCACCACCAGCAAGGTC
GCCCACTCCTGCAGCAGCAGCACCACCACCTCCACCACCACCACCCTCTC
CCTCCTATGAACCACCACCACCGTCCTATGCACCACCACCTTCTTTATCG
GCGGCAAAGCCACCGCAATTGAATGTCATAGACGATGTGGACGACCGCAC
CGATCTGCTGGAACTCATTGAGGATCGGCGGTCGGGTAATCGACTGTTTA
AGGTTCTGGAGCAGCGCAACATGACCCTGGAGGAGCTTATCGAGCACCGC
AAACGCGGCTCTAGCCAACTGCATCTGTCCACCATCGTGAACGGCGGCGA
TGAGCACTCGCGTCTGTATCCCGGCCAGAAGGTTCTGCTGCAGGATAACA
TGGACATTGTTACGGCCTTCGAGAACTTTCCGCACTTTAATCTAATGGAT
CTGAAGAGCGTCAAGCCCGATGAGATCAAGACCGACTCGCAAGGCTCAAG
CTACTTCACCTCCATCATCGATATCGAGCCAAATGACGAGGTCAAACCGA
TGGGAAGTCGAGGTCCCGCCTACGCACAGACATCTTCCTCATCGGCGACC
ATTGGAGCCGGAACTGGAACCATTTCGATCAATTCGCGTGGCGAAAAGTC
GCTGGGATTCTTCCCGTCGTGGAAGACGCTGGCACTCGCCTCCTTGGCCA
CGGCCACCGAGGAGAGGAATCCTTATTTCCTGCCACCGCCTCGACTGCTG
CTCGACGGAAGTTCCCAGGAGGCGGACTCCAACGTTGATTCGGAGCCCAC
CAGCATTGACATTGATCTAAGCGTGAGTCCTTATGGCGGCAACTCCTCCT
CGATGGCGGATAACAGTCGGCTGCCGCCGAATAACGATGTGATCGATGAG
ATCGAGAACGAGGTGGCGCGGGCACACGATCTCCTGGATCTGGAGCTCTC
CGGTCCGGGATTCCATCGCAGTCCTGCTGCAGCGGCGGCCACATCCGCCG
TATCGCAGCAGCATTTGAGCAGCTTGTACGCCAGCATGCCATCCGGGATC
AAGTCCGCGATTGTGGCCAGCACGGCGATAGTGGTCACCGCGTTGGCCAC
CTTCCTGGTCATCTTCGTCGTGTGCCGATGGAAACAGCAGCGCAGGAGAA
AGAGCAGCTACCTGCGCACCTACAATGCGATGAAGAGCAAGCTGCCGCAG
ATGGCGCAGCCATCGCGTCGTTCCTCGATGCGCCAGCACATGGAAGAGCT
GGTCATTGGATCCAGTTCGGGAACAGGGGCTGGATCTGGATCAGGATCGG
GATCTAAGACGGGCATAGCCAGCATCTCCACTTCGGTGGCCTGTTGCACG
CCCGTTCATCAGCTGCAGCGGCAGAGTTCAATGCTCTTTGCCCGCGATGG
ATCCGCCACGATGAGCACCGCCACCTCGCTGACCACGAATAGCACCACGA
ATACCACCATTACAACGGGGGCGCAGCCACCTGCTCCACCGGAGGCGCTG
AGTGGGCGTGGCCTGGCCATTTCGCTGAGAAGTGCTCAACAGAAGCTGAA
CACAATGGATCCCAGTTCGCCGGAGGTGCAGGAATATCTATTCGACACAC
TGCGCAAATCCTTCGACAATGCAAGCTTTCTAGACCAT
BO31116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:21:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14431-RC | 3507 | CG14431-PC | 1..3504 | 17..3520 | 17505 | 100 | Plus |
CG14431-RB | 3507 | CG14431-PB | 1..3504 | 17..3520 | 17505 | 100 | Plus |
CG15772-RB | 780 | CG15772-PB | 109..284 | 116..291 | 235 | 75.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14431-RC | 7289 | CG14431-RC | 744..4249 | 15..3520 | 17515 | 100 | Plus |
CG14431-RB | 5404 | CG14431-RB | 744..4249 | 15..3520 | 17515 | 100 | Plus |
CG15772-RB | 1691 | CG15772-RB | 627..802 | 116..291 | 235 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6962172..6964247 | 389..2464 | 10365 | 100 | Plus |
X | 23542271 | X | 6964730..6965789 | 2461..3520 | 5300 | 100 | Plus |
X | 23542271 | X | 6917558..6917934 | 15..391 | 1885 | 100 | Plus |
X | 23542271 | X | 5752977..5753152 | 116..291 | 235 | 75.6 | Plus |
3L | 28110227 | 3L | 7764799..7764890 | 303..212 | 235 | 83.7 | Minus |
X | 23542271 | X | 5752989..5753154 | 152..311 | 225 | 77.1 | Plus |
3L | 28110227 | 3L | 14751582..14751629 | 160..113 | 195 | 93.8 | Minus |
Blast to na_te.dros performed 2014-11-28 04:21:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6944 | 115..344 | 521 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2533 | 112..328 | 504 | 71.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..7034 | 113..392 | 495 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2509 | 146..351 | 456 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2539 | 106..309 | 444 | 68.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6929 | 135..356 | 443 | 70.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2546 | 113..292 | 378 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..7035 | 112..345 | 374 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2769..2980 | 113..328 | 350 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2546..2899 | 28..377 | 346 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2417..2680 | 106..366 | 294 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6835..7095 | 106..366 | 280 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6869..7168 | 113..403 | 244 | 57.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1055..1179 | 88..216 | 239 | 67.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1049..1164 | 120..240 | 224 | 68.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1532..1613 | 106..186 | 209 | 75.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1088..1170 | 113..195 | 190 | 69.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1633 | 113..220 | 166 | 63.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6973..7200 | 139..348 | 160 | 59.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1112..1176 | 113..178 | 156 | 72.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1595 | 131..208 | 147 | 65.4 | Plus |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1203..1264 | 1338..1399 | 130 | 67.7 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1011 | 117..158 | 129 | 78.6 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3247..3340 | 111..201 | 123 | 62.9 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 128..192 | 113..177 | 117 | 68.2 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9158..9222 | 113..177 | 117 | 68.2 | Plus |
BO31116.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 13:46:45 Download gff for
BO31116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14431-RB | 1..3504 | 17..3522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:19 Download gff for
BO31116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14431-RB | 746..4249 | 17..3522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:30 Download gff for
BO31116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14431-RB | 746..4249 | 17..3522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:30 Download gff for
BO31116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6917560..6917934 | 17..391 | 100 | -> | Plus |
X | 6962175..6964245 | 392..2462 | 99 | -> | Plus |
X | 6964732..6965789 | 2463..3522 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:19 Download gff for
BO31116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6811593..6811967 | 17..391 | 100 | -> | Plus |
arm_X | 6856208..6858278 | 392..2462 | 99 | -> | Plus |
arm_X | 6858765..6859822 | 2463..3522 | 99 | | Plus |
BO31116.pep Sequence
Translation from 16 to 3538
> BO31116.pep
MPSSAINKAARSVANAIQLLAIVLYCCCMVHGQQQQQQQQQLQPQQQQHL
KYQQLQYQMQQQYEYQQQQHYQQQFQQQQQQQQQQQQQLQQQQQQQQHLT
PTAALAQQQQQHEEQIDLLSTQPTQLLQTGVSLIVEDSKGSGDGSGSGIG
ATSNRRRTAQLATRKRKRRPQLPLATMGATEEDSGPEPTSAYWRGHVEDD
ADALRRRNQPLVREPMAALERDREREKQRKRVEPTDASPQGSSPSKAYRR
PYGQAKKEPIVDAGAATPTKTSVDLKNILKNSGGLSLSEILQQKNLSLDD
LLKGKQNALLALQTTAVAPPASTYSSPGSRADPPKKLSNQQNKQGVRRLP
AAYTTTSTTGNDEDESVIAKNKAKFPNALQRLKLFGSSSRESGTTRRILG
GVNGHSSTTMATSTTASASATSTTTRVPLYKKRQHLRSTLKPPGLFKPIT
SSTTSTTTATAVTTTQEVETSTAYSYSTSTTVVNNVEESREEERENSEES
EREDEQDQEQSQENQENQEVVEPDSSEAESGEGIPPTETPEPPAAPSFAP
GSPRYRLRNSSVKENQKRLKDNFIGSNNGESSEEVDPVEASPSSTTSATP
SNKNSEELNYGEDELENFFDEVESHTHHTRVPAPPALAPAPPARSPTPAA
AAPPPPPPPPSPSYEPPPPSYAPPPSLSAAKPPQLNVIDDVDDRTDLLEL
IEDRRSGNRLFKVLEQRNMTLEELIEHRKRGSSQLHLSTIVNGGDEHSRL
YPGQKVLLQDNMDIVTAFENFPHFNLMDLKSVKPDEIKTDSQGSSYFTSI
IDIEPNDEVKPMGSRGPAYAQTSSSSATIGAGTGTISINSRGEKSLGFFP
SWKTLALASLATATEERNPYFLPPPRLLLDGSSQEADSNVDSEPTSIDID
LSVSPYGGNSSSMADNSRLPPNNDVIDEIENEVARAHDLLDLELSGPGFH
RSPAAAAATSAVSQQHLSSLYASMPSGIKSAIVASTAIVVTALATFLVIF
VVCRWKQQRRRKSSYLRTYNAMKSKLPQMAQPSRRSSMRQHMEELVIGSS
SGTGAGSGSGSGSKTGIASISTSVACCTPVHQLQRQSSMLFARDGSATMS
TATSLTTNSTTNTTITTGAQPPAPPEALSGRGLAISLRSAQQKLNTMDPS
SPEVQEYLFDTLRKSFDNASFLDH
BO31116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14431-PC | 1168 | CG14431-PC | 1..1168 | 1..1168 | 5942 | 100 | Plus |
CG14431-PB | 1168 | CG14431-PB | 1..1168 | 1..1168 | 5942 | 100 | Plus |
CG44085-PH | 756 | CG44085-PH | 365..451 | 33..111 | 233 | 63.2 | Plus |
CG44085-PL | 833 | CG44085-PL | 442..528 | 33..111 | 233 | 63.2 | Plus |
CG44085-PI | 833 | CG44085-PI | 442..528 | 33..111 | 233 | 63.2 | Plus |
CG44085-PH | 756 | CG44085-PH | 357..444 | 33..125 | 216 | 59.4 | Plus |
CG44085-PL | 833 | CG44085-PL | 434..521 | 33..125 | 216 | 59.4 | Plus |
CG44085-PH | 756 | CG44085-PH | 375..472 | 33..116 | 202 | 51 | Plus |
CG44085-PL | 833 | CG44085-PL | 452..549 | 33..116 | 202 | 51 | Plus |
CG44085-PH | 756 | CG44085-PH | 337..418 | 37..115 | 191 | 56.1 | Plus |
CG44085-PL | 833 | CG44085-PL | 414..495 | 37..115 | 191 | 56.1 | Plus |
CG44085-PH | 756 | CG44085-PH | 319..428 | 33..115 | 190 | 49.1 | Plus |
CG44085-PH | 756 | CG44085-PH | 338..431 | 33..123 | 190 | 52.1 | Plus |
CG44085-PL | 833 | CG44085-PL | 396..505 | 33..115 | 190 | 49.1 | Plus |
CG44085-PL | 833 | CG44085-PL | 415..508 | 33..123 | 190 | 52.1 | Plus |
CG44085-PH | 756 | CG44085-PH | 317..421 | 34..128 | 181 | 46.7 | Plus |
CG44085-PL | 833 | CG44085-PL | 394..498 | 34..128 | 181 | 46.7 | Plus |