Clone BO31119 Report

Search the DGRC for BO31119

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:311
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG5539-RA
Protein status:BO31119.pep: Imported from assembly
Sequenced Size:922

Clone Sequence Records

BO31119.complete Sequence

922 bp assembled on 2012-03-19

GenBank Submission: KX796354

> BO31119.complete
GAAGTTATCAGTCGACATGTGTTTCTTTGGCCTTGTTTCGCAGTTCCTGT
TCTTCGTTTACGGCACCATGGGACCGGCCTGGCAAACCTATAAGACTCTG
AACAGCGGAGACGAGGAGTTCCTGGCCTGGGCCAAATACTGGATAGTTTA
CGCCTTCCTGGTCACCTTCGAGGTGCTGGCGGACGTCTTCCTCTCCTGGC
TGCCGCTCTACATGCCCACCAAGTTGCTCCTGGTCGTGTGGATCGTGCTG
TCCGCTCCGGCCGCCAATGTCTGGATATTCGACGCCATCCTGCGTCCGGT
GCTGGCAAAGCGGCAGGAGGAGATCGATCACTTCCTGCACCGGGGCAAGG
AGAAGCTCCTGATCGACGCCCTCGCTTCGATGACACAGCTGGTGGCACAG
ACCCAAATCTCTGTACTGCCTTTCGTGTCCAGCTTCTGGTCGAGATCGAG
CACTGCTCCCCTTAGGACTTCCGATCTGTTGCAGGACTCCACTGGAGAAG
GAATTGGAGGCAGAACTTCCGAGGATACTGACTCGGCCAACGTCTCTGTC
CAAAATCTGTCCAGTGGTTCCAGTCCCGTTGGCAGCTTAGAGCACCTCCG
TGACGACTCTGAGGAGCTTCTGGTGGGCGTTTCGAAGGCCACCACGCACC
TGCAGGCGGAGCAGTTCCAGAGCGACGTGTCGTCGGAATCACCCAGGATA
ATTAATCGCCGACCTCAGCGCAAGTTCAAGAATGCCATTGCTATTGCCTC
CGCCACCAAGCTGGAGGACCTCCATGACGATGTGGAGGATCTGCTGGCCA
AGACGGCGATGGAGACCAGCGGCCAGGAAGTGCGTCAGCAGCGTCAACCG
GCCAGCCGTCGCCGTCTTTTAGCACAATCATTTGTGAAACCTCAAACAGG
TTTAGCAAGCTTTCTAGACCAT

BO31119.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5539-RB 891 CG5539-PB 1..888 17..904 4440 100 Plus
CG5539-RA 891 CG5539-PA 1..888 17..904 4440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5539-RB 1334 CG5539-RB 129..1016 17..904 4440 100 Plus
CG5539-RA 1078 CG5539-RA 129..1016 17..904 4440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23804939..23805826 17..904 4440 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:23:09 has no hits.

BO31119.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 10:05:56 Download gff for BO31119.complete
Subject Subject Range Query Range Percent Splice Strand
CG5539-RA 129..1016 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:16 Download gff for BO31119.complete
Subject Subject Range Query Range Percent Splice Strand
CG5539-RA 129..1016 17..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:10:04 Download gff for BO31119.complete
Subject Subject Range Query Range Percent Splice Strand
CG5539-RA 129..1016 17..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:10:04 Download gff for BO31119.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23804939..23805826 17..906 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:16 Download gff for BO31119.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19692462..19693349 17..906 99   Plus

BO31119.pep Sequence

Translation from 16 to 922

> BO31119.pep
MCFFGLVSQFLFFVYGTMGPAWQTYKTLNSGDEEFLAWAKYWIVYAFLVT
FEVLADVFLSWLPLYMPTKLLLVVWIVLSAPAANVWIFDAILRPVLAKRQ
EEIDHFLHRGKEKLLIDALASMTQLVAQTQISVLPFVSSFWSRSSTAPLR
TSDLLQDSTGEGIGGRTSEDTDSANVSVQNLSSGSSPVGSLEHLRDDSEE
LLVGVSKATTHLQAEQFQSDVSSESPRIINRRPQRKFKNAIAIASATKLE
DLHDDVEDLLAKTAMETSGQEVRQQRQPASRRRLLAQSFVKPQTGLASFL
DH

BO31119.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5539-PB 296 CG5539-PB 1..296 1..296 1499 100 Plus
CG5539-PA 296 CG5539-PA 1..296 1..296 1499 100 Plus
CG42678-PG 288 CG30193-PG 5..279 6..278 233 24.3 Plus
CG42678-PE 288 CG30193-PE 5..279 6..278 233 24.3 Plus
CG42678-PD 435 CG30193-PD 162..426 16..278 226 24.5 Plus