BO31144.complete Sequence
824 bp assembled on 2012-03-19
GenBank Submission: KX797143
> BO31144.complete
GAAGTTATCAGTCGAACATGTCTGCCCAAGTGGAGAGCAATGGTGCCAGT
GAAAGTAATAACAATTGCGTCAAGGATGTCAGGCTCCTGCTGCTGCCGGA
GAATTCCACGGATTCGGATGGCAATCCGGCGAGTGTCGCATTCAGTGCGG
AATCGCACAAGAAATTCATTGATGACCTGACACGAACCATTGACGTGGGC
CATGTGAGGAGGAAGCGATTGTGGCGGGTGCCCTGGTTTATTTTGCTGAT
GAGTTTTGTGCAGATATCTTTGCACTGGATAGCTAGTGAGTGTATGCAAA
AAGTACTGATCTTCAAACCGGAATGGAACGTCGAGTACTGGCGCCTACTG
ACCTATATGCTGCTCCATTCCGATTACTGGCATCTGTCTCTCAACATTTG
CTTTCAGTGCTTTATAGGTATCTGCCTGGAAGTGGAGCAGGGTCACTGGC
GTCTGGCCGTGGTCTATATGGTGGGTGGCGTCGCTGGTTCGCTGGCCAAT
GCCTGGCTGCAGCCCCATCTCCATCTGATGGGTGCCTCCGCTGGGGTCTA
CGCCATGCTGGGAAGTCATGTGCCGCACCTGGTTCTGAACTTTTCGCAAT
TGTCGCACCGCTTTGCCCGCATCGCCTCCCTGCTGATATTGTTACTCAGC
GATGTGGGCTTTACAACTTACCACTTTTGCCACAATCACAATCGCAATCC
GCGCACCAGTCTGGAGGCGCATATTGGAGGGGGCGTGGCCGGAATTCTGT
GCGGTTTCATCGTCTATCGACGCCTGCAGCCAGCCAATCAAAAGGCCATT
TACTTTGCAAGCTTTCTAGACCAT
BO31144.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-6-RB | 792 | CG17212-PB | 1..789 | 18..806 | 3945 | 100 | Plus |
| rho-6-RC | 501 | CG17212-PC | 1..501 | 18..528 | 2370 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-6-RB | 944 | CG17212-RB | 73..861 | 18..806 | 3945 | 100 | Plus |
| rho-6-RC | 934 | CG17212-RC | 73..851 | 18..806 | 3760 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12133094..12133339 | 263..18 | 1230 | 100 | Minus |
| 2L | 23513712 | 2L | 12130599..12130818 | 806..587 | 1100 | 100 | Minus |
| 2L | 23513712 | 2L | 12130886..12131068 | 587..405 | 915 | 100 | Minus |
| 2L | 23513712 | 2L | 12131292..12131438 | 407..261 | 735 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:32:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 5936..5973 | 436..398 | 111 | 79.5 | Minus |
BO31144.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 10:06:08 Download gff for
BO31144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-6-RB | 28..817 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:30 Download gff for
BO31144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-6-RB | 28..817 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:10 Download gff for
BO31144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-6-RB | 72..861 | 17..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:10 Download gff for
BO31144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12130597..12130817 | 588..808 | 99 | <- | Minus |
| 2L | 12130886..12131065 | 408..587 | 100 | <- | Minus |
| 2L | 12131292..12131435 | 264..407 | 100 | <- | Minus |
| 2L | 12133094..12133339 | 17..263 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:30 Download gff for
BO31144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12130597..12130817 | 588..808 | 99 | <- | Minus |
| arm_2L | 12130886..12131065 | 408..587 | 100 | <- | Minus |
| arm_2L | 12131292..12131435 | 264..407 | 100 | <- | Minus |
| arm_2L | 12133094..12133339 | 17..263 | 99 | | Minus |
BO31144.pep Sequence
Translation from 17 to 824
> BO31144.pep
MSAQVESNGASESNNNCVKDVRLLLLPENSTDSDGNPASVAFSAESHKKF
IDDLTRTIDVGHVRRKRLWRVPWFILLMSFVQISLHWIASECMQKVLIFK
PEWNVEYWRLLTYMLLHSDYWHLSLNICFQCFIGICLEVEQGHWRLAVVY
MVGGVAGSLANAWLQPHLHLMGASAGVYAMLGSHVPHLVLNFSQLSHRFA
RIASLLILLLSDVGFTTYHFCHNHNRNPRTSLEAHIGGGVAGILCGFIVY
RRLQPANQKAIYFASFLDH
BO31144.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:54:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-6-PB | 263 | CG17212-PB | 1..263 | 1..263 | 1409 | 100 | Plus |
| rho-6-PC | 166 | CG17212-PC | 1..130 | 1..130 | 698 | 100 | Plus |
| rho-PB | 355 | CG1004-PB | 84..297 | 54..251 | 328 | 32.2 | Plus |
| rho-PA | 355 | CG1004-PA | 84..297 | 54..251 | 328 | 32.2 | Plus |
| ru-PA | 341 | CG1214-PA | 95..284 | 69..253 | 317 | 32.6 | Plus |
