BO31168.complete Sequence
2875 bp assembled on 2012-04-06
GenBank Submission: KX799378
> BO31168.complete
GAAGTTATCAGTCGACATGCAGAGCAGTGCCGGCGGAGCGTCGGGGGGCA
GCAACTACGAGGACGTGGCCGCCGCCCGCCGAGGACGCTTCCGTGTCACC
TCCTCCACGCCACAGGGCCCGCCCGAAACGACGCTCGGCCGCTTTCGTCT
CATGCCCACGTCTAATTATGGCGCCATTTCGCCAATCCTCCAGCGGGGTC
GCTTCGCCGTGATTCCCGAAGAGCCCCAAGCCGGTTCCCCCGCATTGGGA
ACGCCTCCGCCGGGCGGCCGAACAGCGCGTTCTCCATCGCCCGAATGGGA
CTTCGACATCGAGCAGGAGCAGGATGGCAGCCTCGGAGGAGCCGGCCGGA
TGCCAGGATCACGACCCTCCAGCGCTCCCGCAGAGCCAAATGCCAAGGCG
GCCAAGAAGGCCTACAAAAAGATGGAAAAGGAGCAGCGTCGCCAGGAGAA
GGAGCAGTCGCGACGGGAAAAGGAGGCCCGCAAGCTGGAGCGCGAGACGG
CGAGAAGGAACGAACGCGAGGCGGCCAAGCTGGAGAAGATCAACAGGCAC
AGCGAGAAGATCTCACGCAGCACGGAGCGAATGGCCATGGCCGGTGTGGG
ATCGCGGTCCGGTTCGCTGGAGCGGAGGCGAAGCGGCGAGGACTCGCCCG
TGCTCAATCAGTCGACGGTGCACGGTATAGCGTCACCCAACCGAAGGCCA
ACGATATTCGACGTTTTCCGACCGCGTGCGAAATCCGATGCGAAGCGGCA
GAAGGAGAAGCATCTGCTGGATCCCTCGTCCGCCGACAGCAGCGCCACCA
GCAGCACCTACTCCGTTTCCGGCGGCACAGGCCCGGCCACGAGCTCGGCA
GCAGGTGGAGCAGGAGGAGCGGCGGCAGCAGCAGGACAGGGCGCAGCGGG
AGGAGCCGGTGGCCTTATGAACTCCATGAAGGTGGCCATGCAGAACTTTA
GCCATCGCCAGCATCCCGCCGTGACGATAACGAGCGCCGACGGCACGCAA
TCAACGGCAAAGAGCAAGTACAAAGACGGCAGTGCCCATCCGCATCAAGG
CAGCGACGCGCAGTATTACCACACGGTGACGGCGGTGCGTCCAAACTCTT
CCCAACGGTCGCCGATGACCAAGGTCATGGATCTGTTCCGGCATCGATCC
AGCTCGGTTGTCAGCGAAGCCGACAAACGCAAAGCGCGCGCGGCGGCGCA
TCAGCAACAGTTGGCTGTGCAAAGTGCTCACATGCGTCGTGCCTCCGCGG
ATTTGGAGAAACGTCGTGCATCAGTTGGTGCCGCAGGTCGAGGACTGCGA
GGGGATGGTACTTTGGATCCACACCATGCAGCCATCCTCTTCAGAGACTC
ACGAGGGTTGCCTGTCGCTGATCCGTTCCTAGAGAAAGTAAATCTATCAG
ATCTGGAAGAGGACGACTCACAGATCTTCGTGAAGTTCTTTCGTTTTCAC
AAGTGCTATGATCTGATACCCACCTCCGCCAAGTTGGTTGTCTTCGACAC
CCAGCTTCTTGTAAAGAAGGCCTTCTACGCCCTCGTCTACAACGGTGTGC
GAGCGGCACCGCTCTGGGATTCGGAGAAGCAACAGTTCGTGGGCATGCTA
ACCATCACGGACTTTATCAAGATCCTGCAAATGTATTACAAATCGCCAAA
TGCGTCCATGGAGCAGCTGGAAGAGCACAAACTGGACACGTGGCGGAGCG
TGCTGCACAACCAGGTGATGCCGTTGGTCAGCATCGGACCGGATGCGTCC
CTCTACGATGCCATCAAAATTCTCATCCACAGCCGCATACATCGCCTGCC
CGTCATCGATCCGGCGACCGGCAATGTCCTCTACATCCTGACACATAAAC
GCATACTTAGGTTCCTTTTCCTATACATTAATGAATTACCAAAGCCCGCG
TACATGCAAAAAAGTTTGCGCGAACTGAAGATTGGCACCTATAACAACAT
CGAGACCGCCGACGAGACGACGAGCATCATCACGGCGCTCAAGAAATTTG
TGGAGCGACGAGTCTCAGCCCTGCCACTAGTGGATTCCGATGGTCGCCTC
GTTGACATTTACGCAAAGTTTGATGTGATTAATCTCGCCGCCGAGAAAAC
CTACAACGATCTCGATGTTTCGCTGCGCAAAGCCAACGAGCACCGGAACG
AGTGGTTCGAGGGCGTGCAGAAGTGCAATCTGGACGAATCGCTCTACACG
ATCATGGAACGAATCGTCCGCGCCGAAGTACATCGACTGGTGGTGGTCGA
CGAGAATCGCAAAGTGATCGGCATTATCTCGCTGTCCGATATACTGCTCT
ACCTCGTCCTGCGACCAAGCGGTGAAGGCGTCGGTGGCTCGGAGAGCTCA
TTGCGTGCGTCCGATCCCGTTCTGCTGCGCAAAGTGGCTGAGGTTGAAAT
ACCAGCGACAGCCGCAGCGGCGACGACAACAACCCCGCCTCGCAGTCCAT
CGGCCGGATCCGGCAATCGCAGCCTGATCGAGGACATACCCGAAGAGGAG
ACGGCGCCGGCGAGGAGCGACGATGCCGACAGTGATAACAATAAGTCCGC
CAGTGAGGATAAAGCCAACAATAACCAGCACGACCAGACGACGACGGCTG
CGACAGCTAATGGTGATAGCAACAACAGCCCCGTAGAAGTGTCCTTTGCC
GATGAGGCGCAGGAAGAAGAAGCTGCCGACCAGGTCGAGCGCAGCAATTG
TGATGATGATGACCAGCCAGCGTTAGCGGAGATTGAGCGCAAGAATGCAT
CGATGGACGACGACGAGGACGATGGGATGAGCAGCGCCGTGTCCGCTGCC
TCCGCTTTGGGCCAGTCACTGACGCCCGCGGCGCAAGAAATGGCGTTGGT
TAGTGAAGCAAGCTTTCTAGACCAT
BO31168.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RA | 2844 | CG17299-PA | 1..2841 | 17..2857 | 14205 | 100 | Plus |
| SNF4Agamma-RB | 2844 | CG17299-PB | 1..2841 | 17..2857 | 14205 | 100 | Plus |
| SNF4Agamma-RF | 4203 | CG17299-PF | 1660..4200 | 317..2857 | 12705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RA | 3614 | CG17299-RA | 611..3451 | 17..2857 | 14205 | 100 | Plus |
| SNF4Agamma-RB | 3348 | CG17299-RB | 440..3280 | 17..2857 | 14205 | 100 | Plus |
| SNF4Agamma-RF | 4769 | CG17299-RF | 2066..4606 | 317..2857 | 12705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21211748..21212524 | 2081..2857 | 3885 | 100 | Plus |
| 3R | 32079331 | 3R | 21178579..21179204 | 438..1063 | 3130 | 100 | Plus |
| 3R | 32079331 | 3R | 21210788..21211080 | 1406..1698 | 1465 | 100 | Plus |
| 3R | 32079331 | 3R | 21211387..21211590 | 1877..2080 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 21211141..21211319 | 1698..1876 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 21155233..21155388 | 162..317 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 21154927..21155075 | 17..165 | 730 | 99.3 | Plus |
| 3R | 32079331 | 3R | 21202452..21202585 | 1224..1357 | 670 | 100 | Plus |
| 3R | 32079331 | 3R | 21179265..21179390 | 1061..1186 | 630 | 100 | Plus |
| 3R | 32079331 | 3R | 21178275..21178399 | 314..438 | 625 | 100 | Plus |
| 3R | 32079331 | 3R | 21207618..21207667 | 1357..1406 | 250 | 100 | Plus |
| 3R | 32079331 | 3R | 21185547..21185586 | 1186..1225 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:21:11 has no hits.
BO31168.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 13:46:44 Download gff for
BO31168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RB | 440..3280 | 17..2859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:18 Download gff for
BO31168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RB | 440..3280 | 17..2859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:26 Download gff for
BO31168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RB | 440..3280 | 17..2859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:26 Download gff for
BO31168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21211141..21211319 | 1698..1876 | 100 | -> | Plus |
| 3R | 21211387..21211590 | 1877..2080 | 100 | -> | Plus |
| 3R | 21210789..21211079 | 1407..1697 | 100 | -> | Plus |
| 3R | 21211748..21212524 | 2081..2859 | 99 | | Plus |
| 3R | 21154927..21155071 | 17..161 | 100 | -> | Plus |
| 3R | 21155233..21155387 | 162..316 | 100 | -> | Plus |
| 3R | 21178278..21178399 | 317..438 | 100 | -> | Plus |
| 3R | 21178580..21179204 | 439..1063 | 100 | -> | Plus |
| 3R | 21179268..21179390 | 1064..1186 | 100 | -> | Plus |
| 3R | 21185548..21185584 | 1187..1223 | 100 | -> | Plus |
| 3R | 21202452..21202585 | 1224..1357 | 100 | -> | Plus |
| 3R | 21207619..21207667 | 1358..1406 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:18 Download gff for
BO31168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16980955..16981109 | 162..316 | 100 | -> | Plus |
| arm_3R | 17004000..17004121 | 317..438 | 100 | -> | Plus |
| arm_3R | 17004990..17005112 | 1064..1186 | 100 | -> | Plus |
| arm_3R | 17011270..17011306 | 1187..1223 | 100 | -> | Plus |
| arm_3R | 17028174..17028307 | 1224..1357 | 100 | -> | Plus |
| arm_3R | 17033341..17033389 | 1358..1406 | 100 | -> | Plus |
| arm_3R | 16980649..16980793 | 17..161 | 100 | -> | Plus |
| arm_3R | 17004302..17004926 | 439..1063 | 100 | -> | Plus |
| arm_3R | 17036511..17036801 | 1407..1697 | 100 | -> | Plus |
| arm_3R | 17036863..17037041 | 1698..1876 | 100 | -> | Plus |
| arm_3R | 17037109..17037312 | 1877..2080 | 100 | -> | Plus |
| arm_3R | 17037470..17038246 | 2081..2859 | 99 | | Plus |
BO31168.pep Sequence
Translation from 16 to 2875
> BO31168.pep
MQSSAGGASGGSNYEDVAAARRGRFRVTSSTPQGPPETTLGRFRLMPTSN
YGAISPILQRGRFAVIPEEPQAGSPALGTPPPGGRTARSPSPEWDFDIEQ
EQDGSLGGAGRMPGSRPSSAPAEPNAKAAKKAYKKMEKEQRRQEKEQSRR
EKEARKLERETARRNEREAAKLEKINRHSEKISRSTERMAMAGVGSRSGS
LERRRSGEDSPVLNQSTVHGIASPNRRPTIFDVFRPRAKSDAKRQKEKHL
LDPSSADSSATSSTYSVSGGTGPATSSAAGGAGGAAAAAGQGAAGGAGGL
MNSMKVAMQNFSHRQHPAVTITSADGTQSTAKSKYKDGSAHPHQGSDAQY
YHTVTAVRPNSSQRSPMTKVMDLFRHRSSSVVSEADKRKARAAAHQQQLA
VQSAHMRRASADLEKRRASVGAAGRGLRGDGTLDPHHAAILFRDSRGLPV
ADPFLEKVNLSDLEEDDSQIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVK
KAFYALVYNGVRAAPLWDSEKQQFVGMLTITDFIKILQMYYKSPNASMEQ
LEEHKLDTWRSVLHNQVMPLVSIGPDASLYDAIKILIHSRIHRLPVIDPA
TGNVLYILTHKRILRFLFLYINELPKPAYMQKSLRELKIGTYNNIETADE
TTSIITALKKFVERRVSALPLVDSDGRLVDIYAKFDVINLAAEKTYNDLD
VSLRKANEHRNEWFEGVQKCNLDESLYTIMERIVRAEVHRLVVVDENRKV
IGIISLSDILLYLVLRPSGEGVGGSESSLRASDPVLLRKVAEVEIPATAA
AATTTTPPRSPSAGSGNRSLIEDIPEEETAPARSDDADSDNNKSASEDKA
NNNQHDQTTTAATANGDSNNSPVEVSFADEAQEEEAADQVERSNCDDDDQ
PALAEIERKNASMDDDEDDGMSSAVSAASALGQSLTPAAQEMALVSEASF
LDH
BO31168.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-PA | 947 | CG17299-PA | 1..947 | 1..947 | 4793 | 100 | Plus |
| SNF4Agamma-PB | 947 | CG17299-PB | 1..947 | 1..947 | 4793 | 100 | Plus |
| SNF4Agamma-PF | 1400 | CG17299-PF | 552..1400 | 99..947 | 4269 | 99.8 | Plus |
| SNF4Agamma-PS | 1400 | CG17299-PS | 552..1400 | 99..947 | 4269 | 99.8 | Plus |
| SNF4Agamma-PR | 1400 | CG17299-PR | 552..1400 | 99..947 | 4269 | 99.8 | Plus |
