BO31178.complete Sequence
1051 bp assembled on 2012-03-19
GenBank Submission: KX800108
> BO31178.complete
GAAGTTATCAGTCGACATGCGAGGACTTCCTAGTTCTTTGGTCCTTCAAG
CCTTGTTGCTGGCCGTGATGGTTCATCAGAGCATTCAAACGCGTTACTTA
AACGCCACCGACGATATCTGTCGACTTTTCAAGGATGGTACCCAACTCTT
GAAGCCCGGATCCTGCAGCGAATCGATTATTTGCCAAAACTTTGAATCAA
CACCAGGTATAACGTGCTCGGGCTCTAAACCGTACTACAGTAAGTCCAAG
GGTTCATGCCAAGCGTCCGCGGATACTTACTGCGATACAAGCAAAATATG
CAAGGGATCTGGAACGGGCTATATTGGTGATACCATAAATTGTGCCAACT
GGTATTACTGTGATGCGGATGCGTTGTTGGGCAAAGGAACATGCAACCTG
GGAATGTACTTCGATCAAGTAAGCAAGAGTTGCGTTTATTCGGAGGACAC
AGTTTGTGCCGCCAAATATGAGATCTGCGACGTTGCGCCCGTAGGCACAC
CATTCCGCGATGATGCCAACTGCCACAAGTACTATACCTGCAGCAGTAAG
AGCCTGGTGGAAAATACATGCGAAAATGGACTGTATTACAACGTGGCCAC
CGGAACTTGTGTGAGGAAAAAGGACGTTATCTGCGAGAACCATCCGTTGC
CAGATGAGGTGTGTGGCAACAAGAAGCTGGCGGTGCGCAACAAATTCGTT
TCAGATATGGCCACATGTCGCGGATATTACTACTGCCGCGATTTGGGATC
CGGTATCCCCGATACCGATCCCATATACCAGCAGTGTGACGAGAACAACT
TCTTCAACCAGGAGCGACAGGCGTGCATGCCGCGCGAGAGCCAGAAATGC
GATTACGATAGATGTGATGGGCGCAAGGATGGCTTCGAAGTGGCCGAAAT
CGATGGATGCCACCACTACATCGAATGCGTCGATGGCCGGGAAACGACTC
CCATAAGCTGTGAGGATAAGTATTTCGACGTTGTCACGCAAAACTGCAGC
TCAACTCACTTAGTTTACGGAGCTTGTTCCTCTGCAAGCTTTCTAGACCA
T
BO31178.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5883-RA | 1020 | CG5883-PA | 1..1017 | 17..1033 | 5085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5883-RA | 1146 | CG5883-RA | 51..1067 | 17..1033 | 5085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11943719..11944730 | 1033..22 | 5060 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:02:55 has no hits.
BO31178.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 10:06:22 Download gff for
BO31178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5883-RA | 45..1061 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:05 Download gff for
BO31178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5883-RA | 51..1067 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:18:09 Download gff for
BO31178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5883-RA | 51..1067 | 17..1035 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:18:09 Download gff for
BO31178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11943717..11944732 | 17..1035 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:05 Download gff for
BO31178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11936817..11937832 | 17..1035 | 99 | | Minus |
BO31178.pep Sequence
Translation from 16 to 1051
> BO31178.pep
MRGLPSSLVLQALLLAVMVHQSIQTRYLNATDDICRLFKDGTQLLKPGSC
SESIICQNFESTPGITCSGSKPYYSKSKGSCQASADTYCDTSKICKGSGT
GYIGDTINCANWYYCDADALLGKGTCNLGMYFDQVSKSCVYSEDTVCAAK
YEICDVAPVGTPFRDDANCHKYYTCSSKSLVENTCENGLYYNVATGTCVR
KKDVICENHPLPDEVCGNKKLAVRNKFVSDMATCRGYYYCRDLGSGIPDT
DPIYQQCDENNFFNQERQACMPRESQKCDYDRCDGRKDGFEVAEIDGCHH
YIECVDGRETTPISCEDKYFDVVTQNCSSTHLVYGACSSASFLDH
BO31178.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5883-PA | 339 | CG5883-PA | 1..339 | 1..339 | 1884 | 100 | Plus |
| CG17145-PB | 334 | CG17145-PB | 27..334 | 32..339 | 572 | 35.8 | Plus |
| CG17145-PA | 334 | CG17145-PA | 27..334 | 32..339 | 572 | 35.8 | Plus |
| CG17147-PB | 337 | CG17147-PB | 1..332 | 1..337 | 510 | 34 | Plus |
| CG6996-PC | 364 | CG6996-PC | 28..331 | 34..337 | 425 | 32.4 | Plus |
| CG17145-PB | 334 | CG17145-PB | 20..199 | 144..333 | 172 | 25.3 | Plus |
| CG17145-PA | 334 | CG17145-PA | 20..199 | 144..333 | 172 | 25.3 | Plus |
