Clone BO31235 Report

Search the DGRC for BO31235

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:312
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG17977-RA
Protein status:BO31235.pep: Imported from assembly
Sequenced Size:310

Clone Sequence Records

BO31235.complete Sequence

310 bp assembled on 2012-03-19

GenBank Submission: KX794624

> BO31235.complete
GAAGTTATCAGTCGACATGACTTTTGCAAGGTGGAACTGGACTATTTTCC
CGTGTATGATCCCGACGAGCTTTCCAATCTGGATGCGAATCTTTCAAAGC
CGGGCAATAGCACAAAACGCTCATATTATTCACCGCATCCTGAGGCCAGA
AGGTCGAATAGAACCGCTGAAAAACAATTTGTCAAAGATGTTCAACTACG
ATATTCTCATGGCTTACAACTGCGACGGTGAGCTCTCAGTCAGCAGTCAG
TCATCTCATACAAATATATTAACGAAACTATTTTTGGGGTCCGCAAGCTT
TCTAGACCAT

BO31235.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG17977-RA 279 CG17977-PA 1..276 17..292 1380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17977-RA 966 CG17977-RA 212..487 17..292 1380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8067125..8067293 287..119 845 100 Minus
2R 25286936 2R 8067342..8067444 119..17 515 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:03:38 has no hits.

BO31235.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 10:06:31 Download gff for BO31235.complete
Subject Subject Range Query Range Percent Splice Strand
CG17977-RA 209..484 17..294 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:27 Download gff for BO31235.complete
Subject Subject Range Query Range Percent Splice Strand
CG17977-RA 212..487 17..294 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:18:27 Download gff for BO31235.complete
Subject Subject Range Query Range Percent Splice Strand
CG17977-RA 212..487 17..294 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:18:27 Download gff for BO31235.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8067125..8067293 119..287 100 <- Minus
2R 8067343..8067444 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:27 Download gff for BO31235.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3954630..3954798 119..287 100 <- Minus
arm_2R 3954848..3954949 17..118 100   Minus

BO31235.pep Sequence

Translation from 16 to 310

> BO31235.pep
MTFARWNWTIFPCMIPTSFPIWMRIFQSRAIAQNAHIIHRILRPEGRIEP
LKNNLSKMFNYDILMAYNCDGELSVSSQSSHTNILTKLFLGSASFLDH

BO31235.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17977-PA 92 CG17977-PA 1..92 1..92 493 100 Plus