Clone BO31287 Report

Search the DGRC for BO31287

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:312
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptVha16-3-RA
Protein status:BO31287.pep: Imported from assembly
Sequenced Size:508

Clone Sequence Records

BO31287.complete Sequence

508 bp assembled on 2012-03-19

GenBank Submission: KX796912

> BO31287.complete
GAAGTTATCAGTCGACATGGCAACAGATGCAGCTGACAAGGATAAGCCGG
CGTACTCGTTCTTCTTTGGTTCGATGGGAGCGGCATCGGCCATCATCTTT
TCAGCCTTGGGAGCGGCATATGGAACGGCCAAGTCGGGCACTGGGATTGC
AGCCATGGCCGTAATGCGACCCGAATTGATCATGAAATCGATTATTCCCG
TTGTGATGGCTGGTATCATTGCGATCTATGGCCTGGTGGTCTCCGTTCTG
ATTGCCGGATCTCTGTCGGATTCGTATACCATTCGCAAGGGATACATCCA
CCTGGCAGCCGGATTATCGGTGGGTTTCGCCGGATTGGCGGCTGGATTTG
CCATTGGGATTGTGGGTGATGCCGGAGTGCGGGGCACTGCCCAGCAGCCA
CGCCTTTTTGTGGGCATGATCCTGATCCTGATCTTCGCCGAGGTACTGGG
TCTGTATGGGCTGATCGTCGCCATTTACCTGTACACCAAGGCAAGCTTTC
TAGACCAT

BO31287.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-3-RB 477 CG32090-PB 1..474 17..490 2370 100 Plus
Vha16-3-RA 477 CG32090-PA 1..474 17..490 2370 100 Plus
Vha16-1-RB 480 CG3161-PB 55..473 74..486 515 75.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-3-RB 633 CG32090-RB 69..542 17..490 2370 100 Plus
Vha16-3-RA 587 CG32090-RA 23..496 17..490 2370 100 Plus
Vha16-1-RB 2798 CG3161-RB 145..563 74..486 515 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11473408..11473881 17..490 2370 100 Plus
3L 28110227 3L 11475145..11475468 167..490 375 74.4 Plus
2R 25286936 2R 6627477..6627668 486..295 345 78.6 Minus
2R 25286936 2R 6627768..6627925 258..101 295 79.1 Minus
2L 23513712 2L 10736392..10736579 486..299 280 76.6 Minus
2R 25286936 2R 16947727..16947868 477..336 215 76.8 Minus
Blast to na_te.dros performed on 2014-11-28 04:04:03 has no hits.

BO31287.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 10:06:36 Download gff for BO31287.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-3-RB 69..542 17..492 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:40 Download gff for BO31287.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-3-RA 23..496 17..492 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:18:39 Download gff for BO31287.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-3-RA 23..496 17..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:18:39 Download gff for BO31287.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11473408..11473881 17..492 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:40 Download gff for BO31287.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11466508..11466981 17..492 99   Plus

BO31287.pep Sequence

Translation from 16 to 508

> BO31287.pep
MATDAADKDKPAYSFFFGSMGAASAIIFSALGAAYGTAKSGTGIAAMAVM
RPELIMKSIIPVVMAGIIAIYGLVVSVLIAGSLSDSYTIRKGYIHLAAGL
SVGFAGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI
VAIYLYTKASFLDH

BO31287.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-3-PB 158 CG32090-PB 1..158 1..158 767 100 Plus
Vha16-3-PA 158 CG32090-PA 1..158 1..158 767 100 Plus
Vha16-1-PB 159 CG3161-PB 8..159 9..158 634 86.2 Plus
Vha16-1-PA 159 CG3161-PA 8..159 9..158 634 86.2 Plus
Vha16-1-PD 159 CG3161-PD 8..159 9..158 634 86.2 Plus