BO31287.complete Sequence
508 bp assembled on 2012-03-19
GenBank Submission: KX796912
> BO31287.complete
GAAGTTATCAGTCGACATGGCAACAGATGCAGCTGACAAGGATAAGCCGG
CGTACTCGTTCTTCTTTGGTTCGATGGGAGCGGCATCGGCCATCATCTTT
TCAGCCTTGGGAGCGGCATATGGAACGGCCAAGTCGGGCACTGGGATTGC
AGCCATGGCCGTAATGCGACCCGAATTGATCATGAAATCGATTATTCCCG
TTGTGATGGCTGGTATCATTGCGATCTATGGCCTGGTGGTCTCCGTTCTG
ATTGCCGGATCTCTGTCGGATTCGTATACCATTCGCAAGGGATACATCCA
CCTGGCAGCCGGATTATCGGTGGGTTTCGCCGGATTGGCGGCTGGATTTG
CCATTGGGATTGTGGGTGATGCCGGAGTGCGGGGCACTGCCCAGCAGCCA
CGCCTTTTTGTGGGCATGATCCTGATCCTGATCTTCGCCGAGGTACTGGG
TCTGTATGGGCTGATCGTCGCCATTTACCTGTACACCAAGGCAAGCTTTC
TAGACCAT
BO31287.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-3-RB | 477 | CG32090-PB | 1..474 | 17..490 | 2370 | 100 | Plus |
Vha16-3-RA | 477 | CG32090-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Vha16-1-RB | 480 | CG3161-PB | 55..473 | 74..486 | 515 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-3-RB | 633 | CG32090-RB | 69..542 | 17..490 | 2370 | 100 | Plus |
Vha16-3-RA | 587 | CG32090-RA | 23..496 | 17..490 | 2370 | 100 | Plus |
Vha16-1-RB | 2798 | CG3161-RB | 145..563 | 74..486 | 515 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11473408..11473881 | 17..490 | 2370 | 100 | Plus |
3L | 28110227 | 3L | 11475145..11475468 | 167..490 | 375 | 74.4 | Plus |
2R | 25286936 | 2R | 6627477..6627668 | 486..295 | 345 | 78.6 | Minus |
2R | 25286936 | 2R | 6627768..6627925 | 258..101 | 295 | 79.1 | Minus |
2L | 23513712 | 2L | 10736392..10736579 | 486..299 | 280 | 76.6 | Minus |
2R | 25286936 | 2R | 16947727..16947868 | 477..336 | 215 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:04:03 has no hits.
BO31287.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 10:06:36 Download gff for
BO31287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-3-RB | 69..542 | 17..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:40 Download gff for
BO31287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-3-RA | 23..496 | 17..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:18:39 Download gff for
BO31287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-3-RA | 23..496 | 17..492 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:18:39 Download gff for
BO31287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11473408..11473881 | 17..492 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:40 Download gff for
BO31287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11466508..11466981 | 17..492 | 99 | | Plus |
BO31287.pep Sequence
Translation from 16 to 508
> BO31287.pep
MATDAADKDKPAYSFFFGSMGAASAIIFSALGAAYGTAKSGTGIAAMAVM
RPELIMKSIIPVVMAGIIAIYGLVVSVLIAGSLSDSYTIRKGYIHLAAGL
SVGFAGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI
VAIYLYTKASFLDH
BO31287.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-3-PB | 158 | CG32090-PB | 1..158 | 1..158 | 767 | 100 | Plus |
Vha16-3-PA | 158 | CG32090-PA | 1..158 | 1..158 | 767 | 100 | Plus |
Vha16-1-PB | 159 | CG3161-PB | 8..159 | 9..158 | 634 | 86.2 | Plus |
Vha16-1-PA | 159 | CG3161-PA | 8..159 | 9..158 | 634 | 86.2 | Plus |
Vha16-1-PD | 159 | CG3161-PD | 8..159 | 9..158 | 634 | 86.2 | Plus |