BO31303.complete Sequence
2806 bp assembled on 2012-04-30
GenBank Submission: KX793843
> BO31303.complete
GAAGTTATCAGTCGACATGGCCCAGCAGGGTCAGAGTGGAAGATCCCCAA
GTGGTCCGCCCGGACCTCCTCCACCCCGTCCACCAAAAACGCCGCCGGGC
GCATCGCCACGTGGAACGCCAACAGCAGACTCGACTCCGGGCGATGTGAC
TCCGGCTCGAGGACCTCCGCCACCGCCAGCGACCAAACGCGTTTCAATAG
GAGTGGGTTCCACGCGTTCTGCCCCACCACCAGCAACTGATCCAACCGGT
CCGCCTCCAACTGCCGGAAAACCAGTGAGAGACACCGGTCCATCGACATC
GCCTAGGCCAAGTCTTCGGGATCCTGGCCAATCGACTTCTGATAAGCCAT
CGACTTCTGATAAGCCATCGACTTCTGATAAGCCATCGACATCTGCACGG
ACAACTGTTCGGGAGCCGGGTCCATCCTCATCTCCCTCTCGTCCCGTTAG
CACTCGTGAATCTGGGCGTATAACTTTCCAGGAAGCAGCACCATCGACGT
CTGCAAAAGTGGTCAAGCTAGCTGCATCTGAACCTCGACCCGCAAAGCCA
CCAGAAAAGGAGGGATTTAGCTTGTTTAAAAGGAAGAAGAAATCCGTGGG
CTCAAGTACGCCACCTTCACCATCACGTGGGCATAGGGCTCCTTCGATAA
TCGCGGCTTCAGCCCTGCAAAATAGGGCCAAAACCAATCGCATCCTTTAC
ACAACCGATGAGGAGGTACGCGAAGCCCTCGTCGAGTTCTCTGTGTTCAT
CATTTTTCTGATTCTAACATCACTGGTTGTTTTGTCCGTTCGGCATACAT
ATATGTTTTATTTCAATGACACGATGAAGAAACTATTTACGAATCGGGAA
ATGGTAGTGGCTCCTTCGGTCACTGTTGGCTTTGAAAAGCTAATCACTGT
GCCGGATTGGTGGGACTATCTAAAATATAACTTTCTTGTAACACTCCACG
GCGATTTGACTTTTATGGACGACGCCCAAGCGAATCTCACGTCAATGCCA
CCTGAGGGTAGTGAGCAGGGTAGTGAGCAGGGTAGTGAGCAGGGTAGTGA
GCAATCACCTGAAGAAGTCGTGGGCGAAGCCCCTGAAGAGGCCCCAGAAA
TGGACAGATTGCAAGAGGATTTTAAATATAATGGAAATCCATACATTGAC
CTCAGGGGGCACAGGAGAGCTAAGCGACAGAGTGGTGTGGATGGGAACAG
CGAGGACGGTAGCGAAGATGTATCTGGCAATTATCTAAAAGATGATTCGG
ATAGCATTCAGGCCAATATGAGCTTTCATCATCTGGAGGGCCGCGTCTTT
CTCTATGAAAACCTTCTCTTGGGACCGCCACGTCTCCGGCAGATACGTGT
GCGCAAGGAAAGCTGCTACGTAAACGACGCCTTCATCCGTTACTTTAACA
CCTGCTATGCTGCATATTCCTCTGGAGCGGAGGACCGAAAGCCGATGCAC
AAGGGTTCACCATTCCGGACGATGCACGATCTGGACTCCACGCCCATCTG
GACGGTGCTGGCCTTCTACCGCACCGGAGGATACACAGTGAACTTGGACT
ACGACAAAGATAGGAACGTAAAGATCATTAACGATCTGAAGGATATTCAC
TGGCTGGATCGGGGCTCGCGTCTGTGTTTGGTTGAGTTTAATTTGTTTAA
CGAGAATACGGACATCTTTCAGAGCATTAAATTAATAGCGGAAATTCCGC
CCACGGGCGGTGTTATACCGCAAGCCCATCTGCAAACGGTCAAGATGTAT
TCCTTTTTTACGGATCGCAGTATGCTCATGACAGTTATCTACATTTTCTG
GTATATAATGGTTATCTACTACACCATCTATGAAATCACGGAAATTCGCA
AATCTGGAATTAAAATTTACTTCTGTTCGATGCTGAACATTCTCGACTGC
GCTATATTACTGGGTTGTTACCTCGCTTTAGTGTACAACATTTGGCACAG
TTTTAAAGTGATGTCCCTCACTGCCAGAGCCCATTCAGATGTGACGTACC
AAAGTCTGGATGTTCTATGTTTCTGGAATATTATTTATGTCGATATGATG
GCCATTCTGGCCTTTCTTGTGTGGATTAAAATATTTAAATTCATCAGCTT
CAACAAGACCCTGGTGCAGTTCACAACCACACTGAAAAGGTGCTCGAAAG
ACTTGGCTGGCTTTAGTTTAATGTTTGGTATTGTCTTTCTGGCCTATGCC
CAATTGGGACTACTTTTATTTGGCACCAAGCACCCAGACTTCCGTAACTT
CATCACCTCGATTTTGACCATGATTCGGATGATTCTTGGCGACTTTCAGT
ACAACCTCATTGAGCAAGCGAATCGAGTGCTGGGTCCCATTTATTTCCTC
ACCTACATCCTTCTTGTGTTCTTCATTCTTTTGAACATGTTCCTGGCCAT
TATCATGGAAACCTACAATACGGTGAAGGGTGAGATCACCCAAGGACGCA
GTCACTTAGGATCGTACATCTACAGGAAACTGTCGGGCATGCTCTACTGG
ATCACCCATTGTGGGCGAAAAAGACGCCACCACCCTCAAGCGTCTGAAAC
CGAGGACAAGGATGCGGAACATGATGTTGGCGCCGCGCACGATGAAACTC
ACGAAATTCGAAAGAACATGACACCAGCAGAGCAACAGTACTTTAAGGAT
ATTCCACAAGGAGAAAACCAGGATATGGTTCGTCTCAATAACCGTGTGGG
CCTCCTTGAGGAAATTCTGGAAAAGTTGATCAACAATATGGATGATATTC
TGAAACGCGTCGAGAAAGATTACCATAACAAGAAAAAAGCAAGCTTTCTA
GACCAT
BO31303.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:29:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkd2-RA | 2775 | CG6504-PA | 1..2772 | 17..2788 | 13860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkd2-RA | 3271 | CG6504-RA | 110..2881 | 17..2788 | 13860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12398383..12399142 | 17..776 | 3800 | 100 | Plus |
| 2L | 23513712 | 2L | 12399205..12399718 | 776..1289 | 2570 | 100 | Plus |
| 2L | 23513712 | 2L | 12399784..12400177 | 1287..1680 | 1970 | 100 | Plus |
| 2L | 23513712 | 2L | 12401115..12401364 | 2383..2632 | 1250 | 100 | Plus |
| 2L | 23513712 | 2L | 12400814..12401057 | 2140..2383 | 1220 | 100 | Plus |
| 2L | 23513712 | 2L | 12400229..12400461 | 1681..1913 | 1165 | 100 | Plus |
| 2L | 23513712 | 2L | 12400523..12400751 | 1912..2140 | 1145 | 100 | Plus |
| 2L | 23513712 | 2L | 12401527..12401633 | 2682..2788 | 535 | 100 | Plus |
| 2L | 23513712 | 2L | 12401424..12401474 | 2632..2682 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:29:03 has no hits.
BO31303.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:00 Download gff for
BO31303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkd2-RA | 84..2843 | 17..2776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:55 Download gff for
BO31303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkd2-RA | 110..2869 | 17..2776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:13 Download gff for
BO31303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkd2-RA | 110..2869 | 17..2776 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:13 Download gff for
BO31303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12401424..12401474 | 2632..2682 | 100 | -> | Plus |
| 2L | 12401528..12401621 | 2683..2776 | 100 | | Plus |
| 2L | 12398383..12399142 | 17..776 | 100 | -> | Plus |
| 2L | 12399206..12399717 | 777..1288 | 100 | -> | Plus |
| 2L | 12399786..12400177 | 1289..1680 | 100 | -> | Plus |
| 2L | 12400229..12400460 | 1681..1912 | 100 | -> | Plus |
| 2L | 12400524..12400751 | 1913..2140 | 100 | -> | Plus |
| 2L | 12400815..12401057 | 2141..2383 | 100 | -> | Plus |
| 2L | 12401116..12401363 | 2384..2631 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:55 Download gff for
BO31303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12401424..12401474 | 2632..2682 | 100 | -> | Plus |
| arm_2L | 12401528..12401621 | 2683..2776 | 100 | | Plus |
| arm_2L | 12398383..12399142 | 17..776 | 100 | -> | Plus |
| arm_2L | 12399206..12399717 | 777..1288 | 100 | -> | Plus |
| arm_2L | 12399786..12400177 | 1289..1680 | 100 | -> | Plus |
| arm_2L | 12400229..12400460 | 1681..1912 | 100 | -> | Plus |
| arm_2L | 12400524..12400751 | 1913..2140 | 100 | -> | Plus |
| arm_2L | 12400815..12401057 | 2141..2383 | 100 | -> | Plus |
| arm_2L | 12401116..12401363 | 2384..2631 | 100 | -> | Plus |
BO31303.pep Sequence
Translation from 16 to 2806
> BO31303.pep
MAQQGQSGRSPSGPPGPPPPRPPKTPPGASPRGTPTADSTPGDVTPARGP
PPPPATKRVSIGVGSTRSAPPPATDPTGPPPTAGKPVRDTGPSTSPRPSL
RDPGQSTSDKPSTSDKPSTSDKPSTSARTTVREPGPSSSPSRPVSTRESG
RITFQEAAPSTSAKVVKLAASEPRPAKPPEKEGFSLFKRKKKSVGSSTPP
SPSRGHRAPSIIAASALQNRAKTNRILYTTDEEVREALVEFSVFIIFLIL
TSLVVLSVRHTYMFYFNDTMKKLFTNREMVVAPSVTVGFEKLITVPDWWD
YLKYNFLVTLHGDLTFMDDAQANLTSMPPEGSEQGSEQGSEQGSEQSPEE
VVGEAPEEAPEMDRLQEDFKYNGNPYIDLRGHRRAKRQSGVDGNSEDGSE
DVSGNYLKDDSDSIQANMSFHHLEGRVFLYENLLLGPPRLRQIRVRKESC
YVNDAFIRYFNTCYAAYSSGAEDRKPMHKGSPFRTMHDLDSTPIWTVLAF
YRTGGYTVNLDYDKDRNVKIINDLKDIHWLDRGSRLCLVEFNLFNENTDI
FQSIKLIAEIPPTGGVIPQAHLQTVKMYSFFTDRSMLMTVIYIFWYIMVI
YYTIYEITEIRKSGIKIYFCSMLNILDCAILLGCYLALVYNIWHSFKVMS
LTARAHSDVTYQSLDVLCFWNIIYVDMMAILAFLVWIKIFKFISFNKTLV
QFTTTLKRCSKDLAGFSLMFGIVFLAYAQLGLLLFGTKHPDFRNFITSIL
TMIRMILGDFQYNLIEQANRVLGPIYFLTYILLVFFILLNMFLAIIMETY
NTVKGEITQGRSHLGSYIYRKLSGMLYWITHCGRKRRHHPQASETEDKDA
EHDVGAAHDETHEIRKNMTPAEQQYFKDIPQGENQDMVRLNNRVGLLEEI
LEKLINNMDDILKRVEKDYHNKKKASFLDH
BO31303.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkd2-PA | 924 | CG6504-PA | 1..924 | 1..924 | 4862 | 100 | Plus |
| brv2-PB | 714 | CG16793-PB | 265..572 | 497..801 | 193 | 21.5 | Plus |
| brv2-PA | 736 | CG16793-PA | 287..594 | 497..801 | 193 | 21.5 | Plus |
| CG13731-PB | 792 | CG13731-PB | 140..332 | 11..210 | 188 | 31 | Plus |
| CG13731-PB | 792 | CG13731-PB | 267..447 | 11..204 | 181 | 28.7 | Plus |
| CG13731-PB | 792 | CG13731-PB | 94..273 | 17..181 | 176 | 31.6 | Plus |
| CG13731-PB | 792 | CG13731-PB | 581..724 | 11..146 | 176 | 32.5 | Plus |
| CG13731-PB | 792 | CG13731-PB | 428..646 | 9..210 | 174 | 29.8 | Plus |
| CG15021-PA | 420 | CG15021-PA | 174..365 | 14..210 | 171 | 26.5 | Plus |
| CG13731-PB | 792 | CG13731-PB | 221..435 | 9..210 | 170 | 30.7 | Plus |
| CG13731-PB | 792 | CG13731-PB | 396..540 | 15..181 | 170 | 29.6 | Plus |
| CG13731-PB | 792 | CG13731-PB | 322..543 | 14..210 | 169 | 28.1 | Plus |
| CG13731-PB | 792 | CG13731-PB | 54..236 | 9..181 | 165 | 28.6 | Plus |
