Clone BO31344 Report

Search the DGRC for BO31344

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:313
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG42846-RA
Protein status:BO31344.pep: Imported from assembly
Sequenced Size:535

Clone Sequence Records

BO31344.complete Sequence

535 bp assembled on 2012-03-26

GenBank Submission: KX798414

> BO31344.complete
GAAGTTATCAGTCGACATGGAGGCGATTTATCAATTGGTCGTAATCTTAG
CTATTATTTTTGGGCATCTGCAGTTCCAGTCCACGGTGTTAGCTGACCCT
GCTTTTCGTCGCCCAAATGCCATCGCGCCCGCCCGCACCTATAGCGGTGT
ATACAACCACTCGACGATTCACAGAGCTGTCGAAAAGTCCAATTTGACTG
CCCCGGCGGTTCACCAACCTGTCCTCCAGGCACCCGGATTTATAATACCA
TATCAGAACCGTTCGTTGGTTCACGCCAATCAGGGATCTCATGGCGTTTT
ACCAGGTAGCGTTCCAGCGCAAGATTCAGGTCCTTCCAGCGTCTGGGTGG
CCAGTAATAATCACCAACCAGGAGTAACTGGCGTTCTTCAACCAAACCCA
TCCCAAGGTAAAATCGTAAATCCACCATTTGTCATTGGCAAAAATAATGG
ATCGTTTTATTCAACCTATAATGCAACAGTCCCTGGCAGGACTTATCCTT
ATGGAAACCTTTCCATTGCAAGCTTTCTAGACCAT

BO31344.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG42846-RA 504 CG42846-PA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG42846-RA 564 CG42846-RA 14..516 15..517 2515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 231019..231487 517..49 2345 100 Minus
3L 28110227 3L 231556..231591 50..15 180 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:13:14 has no hits.

BO31344.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:06 Download gff for BO31344.complete
Subject Subject Range Query Range Percent Splice Strand
CG42846-RA 1..501 17..519 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:25 Download gff for BO31344.complete
Subject Subject Range Query Range Percent Splice Strand
CG42846-RA 16..516 17..519 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:22:51 Download gff for BO31344.complete
Subject Subject Range Query Range Percent Splice Strand
CG42846-RA 16..516 17..519 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:22:51 Download gff for BO31344.complete
Subject Subject Range Query Range Percent Splice Strand
3L 231016..231485 51..519 99 <- Minus
3L 231556..231589 17..50 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:25 Download gff for BO31344.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 231016..231485 51..519 99 <- Minus
arm_3L 231556..231589 17..50 100   Minus

BO31344.pep Sequence

Translation from 16 to 535

> BO31344.pep
MEAIYQLVVILAIIFGHLQFQSTVLADPAFRRPNAIAPARTYSGVYNHST
IHRAVEKSNLTAPAVHQPVLQAPGFIIPYQNRSLVHANQGSHGVLPGSVP
AQDSGPSSVWVASNNHQPGVTGVLQPNPSQGKIVNPPFVIGKNNGSFYST
YNATVPGRTYPYGNLSIASFLDH

BO31344.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG42846-PA 167 CG42846-PA 1..167 1..167 879 100 Plus