Clone BO31366 Report

Search the DGRC for BO31366

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:313
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptHand-RA
Protein status:BO31366.pep: Imported from assembly
Sequenced Size:556

Clone Sequence Records

BO31366.complete Sequence

556 bp assembled on 2012-03-26

GenBank Submission: KX797047

> BO31366.complete
GAAGTTATCAGTCGACATGTTTAAGAATTCCGTTGCCTTGACGTGCGAAT
ACTCAACCATGTATTATAACTCAATTTATAATACTTCCAACATGTTCGAC
ATGAAACACTCCGAAAGTCAAGTTCAGCAACAAATATATAACACAAGTCA
CCTAGGTTATGTGCCAACTTCGAATACTCGGATTGTTAAGAAACGTAATA
CAGCTAACAAAAAGGAGAGAAGGCGAACCCAAAGTATAAACAATGCGTTT
TCCTATCTGCGAGAAAAGATTCCCAACGTTCCTACAGATACTAAATTATC
AAAGATTAAAACATTGAAGTTGGCCATATTGTACATAAACTATTTAGTTA
ATGTTCTTGATGGAGATCTGGATCCAAAAGGCGGATTTCGAGCCGAACTT
AAGCCGGTCAGTCGAAAGATCTGTAGCGAAAAGAAGCACTGTTTGAAATC
AGAGATTCAAAATGTTCCATTGTCGACCAAGGGCCGCACGGGTTGGCCAC
AAGATGTTTGGGCATCGGAACTTATTCCAGAACATAATGCAAGCTTTCTA
GACCAT

BO31366.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
Hand-RA 525 CG18144-PA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
Hand-RA 713 CG18144-RA 87..608 17..538 2610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10294863..10295059 304..108 985 100 Minus
2L 23513712 2L 10294474..10294631 460..303 790 100 Minus
2L 23513712 2L 10295209..10295299 107..17 455 100 Minus
2L 23513712 2L 10292784..10292866 538..456 400 98.8 Minus
Blast to na_te.dros performed on 2014-11-28 04:14:24 has no hits.

BO31366.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:17 Download gff for BO31366.complete
Subject Subject Range Query Range Percent Splice Strand
Hand-RA 7..522 23..540 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:02 Download gff for BO31366.complete
Subject Subject Range Query Range Percent Splice Strand
Hand-RA 93..608 23..540 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:23:21 Download gff for BO31366.complete
Subject Subject Range Query Range Percent Splice Strand
Hand-RA 93..608 23..540 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:23:21 Download gff for BO31366.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10292782..10292861 461..540 97 <- Minus
2L 10294474..10294629 305..460 100 <- Minus
2L 10294863..10295059 108..304 100 <- Minus
2L 10295209..10295293 23..107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:02 Download gff for BO31366.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10292782..10292861 461..540 97 <- Minus
arm_2L 10294474..10294629 305..460 100 <- Minus
arm_2L 10294863..10295059 108..304 100 <- Minus
arm_2L 10295209..10295293 23..107 100   Minus

BO31366.pep Sequence

Translation from 16 to 556

> BO31366.pep
MFKNSVALTCEYSTMYYNSIYNTSNMFDMKHSESQVQQQIYNTSHLGYVP
TSNTRIVKKRNTANKKERRRTQSINNAFSYLREKIPNVPTDTKLSKIKTL
KLAILYINYLVNVLDGDLDPKGGFRAELKPVSRKICSEKKHCLKSEIQNV
PLSTKGRTGWPQDVWASELIPEHNASFLDH

BO31366.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
Hand-PA 174 CG18144-PA 1..174 1..174 914 100 Plus
Fer1-PA 251 CG33323-PA 77..140 54..117 152 48.4 Plus
Fer1-PB 256 CG33323-PB 82..145 54..117 152 48.4 Plus
HLH54F-PA 242 CG5005-PA 32..88 59..115 150 47.4 Plus
Fer2-PE 273 CG5952-PE 148..210 59..120 145 52.4 Plus