BO31375.complete Sequence
1963 bp assembled on 2012-04-06
GenBank Submission: KX797961
> BO31375.complete
GAAGTTATCAGTCGACATGGATCGCAAGGCTGAGCTGGAACGCAAGAAGG
CCAAGTTGGCCGCCCTGCGCGAGGAGAAGGATCGCCGGCGTCGCGAGAAG
GAGATCAAGGACATGGAGGAGGCGGCCGGTCGCATTGGCGGCGGAGCAGG
CATCGACAAGGATCAGCGCAAGGATCTCGACGAAATGCTGTCATCGCTGG
GCGTGGCCCCCGTCTCCGAGGTCCTTTCCTCACTCTCCTCCGTCAACTCG
ATGACTTCGGACAACTCGAACACACAGACCCCCGACGCCAGCCTCCAAGC
CACTGTCAATGGCCAGAGCGGCGGAAAGAAACAGCCCCTCAACCTAAGCG
TCTACAATGTGCAGGCTACGAACATTCCACCAAAAGAGACACTGGTCTAC
ACAAAGCAGACCCAGACGACCAGTACCGGAGGCGGAAACGGCGATGCTCA
TGCTACGGATTATTATGATGAATACAATCTTAATCCGGGTTTAGAGTGGG
AGGATGAATTCACAGGAGACGACGAAGAGAGCTCACTGCAGAACCTGGGC
AACGGATTCACCTCCAAGCTGCCACCGGGCTATCTCACCCACGGCCTGCC
CACCGTTAAGGACGTCGCCCCGGCCATCACACCACTCGAGATCAAGAAGG
AGACTGAAGTGAAGAAGGAGGTCAACGAGCTGTCCGAGGAGCAGAAGCAG
ATGATCATACTGTCGGAGAACTTCCAGCGGTTCGTGGTGCGTGCCGGCCG
CGTCATCGAACGGGCCCTCTCGGAGAATGTGGACATATACACGGACTACA
TCGGCGGCGGCGACAGCGAGGAGGCGAACGACGAGCGATCGCATGCGCGG
CTCTCGCTGAACCGCGTCTTCTACGACGAGCGCTGGTCGAAGAACCGCTG
CATCACCAGCATGGACTGGTCCACCCACTTCCCCGAGCTGGTGGTGGGCT
CGTACCACAACAACGAGGAGAGTCCGAACGAGCCGGACGGCGTGGTGATG
GTGTGGAACACCAAGTTCAAGAAGAGCACGCCCGAGGACGTCTTCCACTG
CCAGAGCGCGGTGATGTCCACCTGCTTTGCCAAGTTCAATCCCAACCTGA
TCCTCGGCGGCACCTATTCGGGCCAGATTGTGCTGTGGGACAATCGCGTG
CAGAAGCGCACGCCCATACAGCGCACGCCCCTCAGTGCCGCGGCGCACAC
GCATCCCGTCTACTGCCTCCAAATGGTGGGCACCCAGAATGCGCACAACG
TCATCTCCATATCCTCGGACGGCAAGCTGTGCTCCTGGTCGCTGGACATG
CTGTCCCAACCACAGGACACGCTGGAGCTGCAGCAGCGCCAGTCGAAGGC
CATTGCCATTACATCGATGGCCTTCCCGGCCAACGAGATCAATAGCCTGG
TGATGGGCAGTGAGGACGGCTACGTCTACTCCGCCTCGCGCCACGGCCTG
CGCTCCGGGGTCAACGAGGTTTACGAACGCCATCTTGGCCCTATCACTGG
CATATCCACGCACTACAACCAGCTGTCGCCGGACTTTGGCCACCTCTTCC
TAACCTCGTCCATTGACTGGACCATCAAGCTCTGGTCGCTAAAGGACACA
AAGCCGCTGTACTCCTTTGAGGACAACTCCGACTACGTGATGGACGTCGC
CTGGTCGCCCGTGCATCCCGCACTCTTCGCCGCCGTCGACGGCAGCGGCC
GCCTGGATCTGTGGAACCTCAACCAAGACACGGAGGTGCCGACCGCCTCG
ATTGTCGTGGCGGGAGCACCAGCCCTTAACCGCGTCTCTTGGACCCCATC
CGGTCTGCACGTGTGCATCGGCGACGAGGCCGGCAAGCTGTACGTGTACG
ACGTGGCCGAGAACCTGGCGCAGCCATCGCGCGACGAATGGTCGCGGTTC
AACACCCATCTTAGCGAGATCAAGATGAACCAGAGCGATGAGGTCGCAAG
CTTTCTAGACCAT
BO31375.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-RD | 1932 | CG18000-PD | 1..1929 | 17..1945 | 9630 | 99.9 | Plus |
| sw-RL | 1932 | CG18000-PL | 1..1929 | 17..1945 | 9630 | 99.9 | Plus |
| sw-RM | 1932 | CG18000-PM | 1..1929 | 17..1945 | 9630 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-RD | 2889 | CG18000-RD | 200..2128 | 17..1945 | 9630 | 99.9 | Plus |
| sw-RL | 3032 | CG18000-RL | 343..2271 | 17..1945 | 9630 | 99.9 | Plus |
| sw-RM | 2873 | CG18000-RM | 347..2275 | 17..1945 | 9630 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:26:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20229139..20230063 | 1595..671 | 4610 | 99.9 | Minus |
| X | 23542271 | X | 20182758..20183682 | 1595..671 | 4595 | 99.8 | Minus |
| X | 23542271 | X | 20205922..20206846 | 1595..671 | 4595 | 99.8 | Minus |
| X | 23542271 | X | 20174931..20175855 | 1595..671 | 4580 | 99.7 | Minus |
| X | 23542271 | X | 20190482..20191406 | 1595..671 | 4580 | 99.7 | Minus |
| X | 23542271 | X | 20198198..20199122 | 1595..671 | 4580 | 99.7 | Minus |
| X | 23542271 | X | 20213615..20214507 | 1563..671 | 4435 | 99.8 | Minus |
| X | 23542271 | X | 20221297..20222189 | 1563..671 | 4435 | 99.8 | Minus |
| X | 23542271 | X | 20182341..20182693 | 1945..1593 | 1765 | 100 | Minus |
| X | 23542271 | X | 20228722..20229074 | 1945..1593 | 1765 | 100 | Minus |
| X | 23542271 | X | 20220882..20221226 | 1945..1601 | 1680 | 99.1 | Minus |
| X | 23542271 | X | 20190123..20190417 | 1887..1593 | 1430 | 99 | Minus |
| X | 23542271 | X | 20197839..20198133 | 1887..1593 | 1430 | 99 | Minus |
| X | 23542271 | X | 20205563..20205857 | 1887..1593 | 1430 | 99 | Minus |
| X | 23542271 | X | 20213258..20213544 | 1887..1601 | 1390 | 99 | Minus |
| X | 23542271 | X | 20230441..20230598 | 671..514 | 790 | 100 | Minus |
| X | 23542271 | X | 20176238..20176395 | 671..514 | 790 | 100 | Minus |
| X | 23542271 | X | 20184060..20184217 | 671..514 | 790 | 100 | Minus |
| X | 23542271 | X | 20191789..20191946 | 671..514 | 790 | 100 | Minus |
| X | 23542271 | X | 20199505..20199662 | 671..514 | 790 | 100 | Minus |
| X | 23542271 | X | 20207229..20207386 | 671..514 | 790 | 100 | Minus |
| X | 23542271 | X | 20214885..20215042 | 671..514 | 790 | 100 | Minus |
| X | 23542271 | X | 20222567..20222724 | 671..514 | 790 | 100 | Minus |
| X | 23542271 | X | 20235508..20235663 | 172..17 | 780 | 100 | Minus |
| X | 23542271 | X | 20235288..20235434 | 318..172 | 735 | 100 | Minus |
| X | 23542271 | X | 20234775..20234904 | 446..317 | 650 | 100 | Minus |
| X | 23542271 | X | 20174604..20174768 | 1933..1763 | 640 | 93 | Minus |
| X | 23542271 | X | 20178270..20178399 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20186145..20186274 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20193875..20194004 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20201591..20201720 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20209261..20209390 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20216917..20217046 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20224652..20224781 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20232116..20232165 | 516..467 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:26:09 has no hits.
BO31375.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 13:46:58 Download gff for
BO31375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RL | 527..2455 | 17..1947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:58 Download gff for
BO31375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RM | 347..2275 | 17..1947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:43 Download gff for
BO31375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RM | 347..2275 | 17..1947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:43 Download gff for
BO31375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20228720..20229072 | 1595..1947 | 99 | <- | Minus |
| X | 20229140..20230062 | 672..1594 | 99 | <- | Minus |
| X | 20230441..20230596 | 516..671 | 100 | <- | Minus |
| X | 20232117..20232164 | 468..515 | 100 | <- | Minus |
| X | 20233423..20233443 | 447..467 | 100 | <- | Minus |
| X | 20234775..20234902 | 319..446 | 100 | <- | Minus |
| X | 20235288..20235434 | 172..318 | 100 | <- | Minus |
| X | 20235509..20235663 | 17..171 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:58 Download gff for
BO31375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20099794..20100146 | 1595..1947 | 99 | <- | Minus |
| arm_X | 20100214..20101136 | 672..1594 | 99 | <- | Minus |
| arm_X | 20101515..20101670 | 516..671 | 100 | <- | Minus |
| arm_X | 20103191..20103238 | 468..515 | 100 | <- | Minus |
| arm_X | 20104497..20104517 | 447..467 | 100 | <- | Minus |
| arm_X | 20105849..20105976 | 319..446 | 100 | <- | Minus |
| arm_X | 20106362..20106508 | 172..318 | 100 | <- | Minus |
| arm_X | 20106583..20106737 | 17..171 | 100 | | Minus |
BO31375.pep Sequence
Translation from 16 to 1963
> BO31375.pep
MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQ
RKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQ
SGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDAHATDYY
DEYNLNPGLEWEDEFTGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDV
APAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERA
LSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMD
WSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVM
STCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYC
LQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITS
MAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHY
NQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVH
PALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVC
IGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDEVASFLDH
BO31375.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-PD | 643 | CG18000-PD | 1..643 | 1..643 | 3369 | 100 | Plus |
| sw-PL | 643 | CG18000-PL | 1..643 | 1..643 | 3369 | 100 | Plus |
| sw-PM | 643 | CG18000-PM | 1..643 | 1..643 | 3369 | 100 | Plus |
| sw-PF | 650 | CG18000-PF | 1..650 | 1..643 | 3351 | 98.9 | Plus |
| sw-PE | 642 | CG18000-PE | 1..642 | 1..643 | 3351 | 99.8 | Plus |
