BO31382.complete Sequence
2527 bp assembled on 2012-04-06
GenBank Submission: KX799314
> BO31382.complete
GAAGTTATCAGTCGACATGGAAAAGCACCCGAGTCTGTCCCAGCGGATGG
GTACCACTTACCGTCCGAGGAAGGGCCTGAAGTGTCTGTCATTCGAGTTC
CAGTGCCGCCTGCTTCTCCACCATCTGCTGCTAACGTCGCTGAGTGGCCG
GCATTTCGTATACGCCACTAGTGCCGTCGGGGGGGCGCTGAGTGCCAACA
ACTGTCACGACATCCACCACGGATTCGATGTCTACCCCAATCTCACGGCC
GTATCGCTGGCTCAATCGACGGACACGCCCCTGACCGCGACGATGCCACG
GTCCGCCTGGAAGTGTTGTTGCTGGAATGCAAGTAATCAAGCGGAGGAGG
TGGAGTGCCGCTGCGAGGGCGATGGACTGAATCGCGTACCGCAAACCCTG
ACGCTGCCCATACAGCGTCTAACTATCGCATCGGCGGGGCTGCCACGCCT
ACGCCACACGGGGCTGAAGGTCTACGGATCCACGTTGCTGGATGTGGCCT
TCACCGACTGCCTGCAGCTGGAACTGATACAGGATGGCGCTTTTGCTAAT
TTAACCCTATTGCGAACAATCTACATCACCAACGCACCCAAGCTGACTTT
CCTCTCGAAGGACGTATTCCTTGGCATTTCGGACACCGTGGACATTATAC
GAATCATAAATAGTGGCCTGACCAGAGTTCCTGACTTGGGCCACCTGCCA
CCTCATAATATTCTGCAAATGATAGATCTCGATAACAATCAAATCACTCG
GATAGACAGTAAATCTATAAAAGTAAAGACTGCCCAATTAATTTTGACAA
ACAATGAAATAAGCTACGTTGATGACTCCGCTTTCTTCGGCTCCAAGATA
GCCAAACTATCGCTGAAGGAAAACAAAAAACTGCAAATGATGCATCCCAA
CGCATTCGATGGCATCATAGACATAACTGAACTCGATCTCTCCAGCACCT
CGTTAGTTGGCCTTCCTTCTGCCGGACTTCAGAACATCGAAGCGTTGTAC
ATTCAGAACACCCACACTTTAAAGACCATACCATCCATCTACAACTTCCG
GAATCTGCAGAGGGCCTATCTCACCCACTCCTTCCACTGCTGCGCCTTCC
AGTTTCCATCTCGGCACGATCCTCAGCGACACGCCCAGCGGATGCTGGAG
ATTGAGAAATGGCGGAAGCAGTGCAAAAGTGACTCCGGAACGCGAAAGGA
GAGATCAACCTTGGATAACCCCTTCAATATGCCAGAAGATTTTGGTTCTT
TCGGTGGCACCGACGACTCAGCAACAGATATAACCCCCATCACTTTCGCT
TCCTTCGATTACATGGCCGATGACACCATGAACAAGGGCACTTTTCACGA
AAAGATCATCCTGAATCCGGGTGATGACTCCTCGGCCGAACTTTGCGGCA
ATTTTACTTTCAGAAAACCCAATATTGAATGCTATCCCATGCCCAATGAT
CTAAATCCTTGCGAGGATGTAATGGGCTATCAATGGCTGCGTATTTCCGT
CTGGATTGTGGTGGCTCTGGCCGTCGTGGGCAACGTGGCTGTGCTGACAG
TAATACTATCGATTAGGCCGGAGTCGACGCCGGTGCCGCGATTTCTGATG
TGCCACCTGGCCTTCGCCGACCTGTGCTTGGGCCTCTATCTGCTGCTGGT
GGCCTGCATCGATGCGCATTCCATGGGGGAGTATTTCAATTTCGCCTACG
ATTGGCAGTACGGGCTTGGCTGCAAAGTAGCCGGCTTTCTCACCGTGTTC
GCCAGTCATTTGTCGGTGTTCACGCTGACCGTGATTACCATCGAGCGCTG
GCTGGCAATCACGCAGGCCATGTACCTGAACCATCGCATCAAGTTGCGTC
CTGCAGCGCTCATCATGCTGGGCGGCTGGATTTACTCGATGCTTATGTCC
TCGCTGCCCCTGTTTGGCATAAGTAATTATTCGTCGACGAGCATTTGCCT
TCCGATGGAAAATCGCGATGTGTACGACACCATTTACCTGATTGCCATTC
TGGGCTCCAACGGAGTGGCCTTCTCCATCATAGCCGTCTGCTATGCCCAG
ATCTATTTGTCCTTGGGTCGCGAGACACGGCAGGCCCACCAGAATAGCCC
GGGCGAGTTGAGCGTTGCCAAGAAGATGGCCCTTTTGGTCTTTACAAACT
TTGCGTGCTGGTCGCCTATTGCTTTCTTTGGACTCACCGCGTTGGCCGGA
TACCCACTGATTAATGTTACCAAGTCGAAGATATTGCTAGTCTTCTTCTA
TCCCTTGAATTCCTGCGCGGATCCCTATCTGTATGCCATATTGACGTCCC
AGTATCGCCAGGATCTGTTCACCTTGTTGTCCAAATTGGGCCTGTGCCAG
CAGAGCGCTCTGAAGTACAAGGATAGCCTTTCCGGCCAAGCCACCACCAG
ATTTACAATCCACGGCTCCATTCAGAGGCACAGCTCACTCACGTGCAAAA
TGCAGACTGTGATGGGCGCTGAGACGCAGAAAATGCTGAAGAACAGCGAG
GATTATGTTGCAAGCTTTCTAGACCAT
BO31382.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lgr1-RB | 2496 | CG7665-PB | 1..2493 | 17..2509 | 12465 | 100 | Plus |
| Lgr1-RA | 2496 | CG7665-PA | 1..2493 | 17..2509 | 12465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:25:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lgr1-RB | 3222 | CG7665-RB | 335..2828 | 16..2509 | 12470 | 100 | Plus |
| Lgr1-RA | 3152 | CG7665-RA | 265..2758 | 16..2509 | 12470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:25:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17730874..17731236 | 1051..1413 | 1815 | 100 | Plus |
| 3R | 32079331 | 3R | 17728382..17728707 | 16..341 | 1630 | 100 | Plus |
| 3R | 32079331 | 3R | 17731810..17732039 | 1712..1941 | 1150 | 100 | Plus |
| 3R | 32079331 | 3R | 17732106..17732305 | 1940..2139 | 1000 | 100 | Plus |
| 3R | 32079331 | 3R | 17732373..17732570 | 2137..2334 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 17732634..17732813 | 2330..2509 | 885 | 99.4 | Plus |
| 3R | 32079331 | 3R | 17731297..17731453 | 1411..1567 | 785 | 100 | Plus |
| 3R | 32079331 | 3R | 17729214..17729369 | 341..496 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 17731592..17731740 | 1565..1713 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 17730698..17730815 | 934..1051 | 590 | 100 | Plus |
| 3R | 32079331 | 3R | 17729612..17729689 | 571..648 | 390 | 100 | Plus |
| 3R | 32079331 | 3R | 17729457..17729531 | 496..570 | 375 | 100 | Plus |
| 3R | 32079331 | 3R | 17730167..17730241 | 649..723 | 375 | 100 | Plus |
| 3R | 32079331 | 3R | 17730556..17730630 | 859..933 | 375 | 100 | Plus |
| 3R | 32079331 | 3R | 17730432..17730500 | 790..858 | 345 | 100 | Plus |
| 3R | 32079331 | 3R | 17730303..17730368 | 724..789 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:25:15 has no hits.
BO31382.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 13:46:56 Download gff for
BO31382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fsh-RB | 587..3079 | 17..2511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:53 Download gff for
BO31382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lgr1-RA | 266..2758 | 17..2511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:21 Download gff for
BO31382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lgr1-RA | 266..2758 | 17..2511 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:21 Download gff for
BO31382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17731811..17732039 | 1713..1941 | 100 | -> | Plus |
| 3R | 17732108..17732303 | 1942..2137 | 100 | -> | Plus |
| 3R | 17732374..17732570 | 2138..2334 | 100 | -> | Plus |
| 3R | 17732639..17732813 | 2335..2511 | 98 | | Plus |
| 3R | 17730303..17730368 | 724..789 | 100 | -> | Plus |
| 3R | 17730432..17730500 | 790..858 | 100 | -> | Plus |
| 3R | 17730556..17730630 | 859..933 | 100 | -> | Plus |
| 3R | 17730698..17730815 | 934..1051 | 100 | -> | Plus |
| 3R | 17730875..17731236 | 1052..1413 | 100 | -> | Plus |
| 3R | 17731300..17731452 | 1414..1566 | 100 | -> | Plus |
| 3R | 17731594..17731739 | 1567..1712 | 100 | -> | Plus |
| 3R | 17728383..17728706 | 17..340 | 100 | -> | Plus |
| 3R | 17729214..17729368 | 341..495 | 100 | -> | Plus |
| 3R | 17729457..17729531 | 496..570 | 100 | -> | Plus |
| 3R | 17729612..17729689 | 571..648 | 100 | -> | Plus |
| 3R | 17730167..17730241 | 649..723 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:53 Download gff for
BO31382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13557533..13557761 | 1713..1941 | 100 | -> | Plus |
| arm_3R | 13557830..13558025 | 1942..2137 | 100 | -> | Plus |
| arm_3R | 13558096..13558292 | 2138..2334 | 100 | -> | Plus |
| arm_3R | 13554105..13554428 | 17..340 | 100 | -> | Plus |
| arm_3R | 13554936..13555090 | 341..495 | 100 | -> | Plus |
| arm_3R | 13555179..13555253 | 496..570 | 100 | -> | Plus |
| arm_3R | 13555334..13555411 | 571..648 | 100 | -> | Plus |
| arm_3R | 13555889..13555963 | 649..723 | 100 | -> | Plus |
| arm_3R | 13556025..13556090 | 724..789 | 100 | -> | Plus |
| arm_3R | 13556154..13556222 | 790..858 | 100 | -> | Plus |
| arm_3R | 13556278..13556352 | 859..933 | 100 | -> | Plus |
| arm_3R | 13556420..13556537 | 934..1051 | 100 | -> | Plus |
| arm_3R | 13556597..13556958 | 1052..1413 | 100 | -> | Plus |
| arm_3R | 13557022..13557174 | 1414..1566 | 100 | -> | Plus |
| arm_3R | 13557316..13557461 | 1567..1712 | 100 | -> | Plus |
| arm_3R | 13558361..13558535 | 2335..2511 | 98 | | Plus |
BO31382.pep Sequence
Translation from 16 to 2527
> BO31382.pep
MEKHPSLSQRMGTTYRPRKGLKCLSFEFQCRLLLHHLLLTSLSGRHFVYA
TSAVGGALSANNCHDIHHGFDVYPNLTAVSLAQSTDTPLTATMPRSAWKC
CCWNASNQAEEVECRCEGDGLNRVPQTLTLPIQRLTIASAGLPRLRHTGL
KVYGSTLLDVAFTDCLQLELIQDGAFANLTLLRTIYITNAPKLTFLSKDV
FLGISDTVDIIRIINSGLTRVPDLGHLPPHNILQMIDLDNNQITRIDSKS
IKVKTAQLILTNNEISYVDDSAFFGSKIAKLSLKENKKLQMMHPNAFDGI
IDITELDLSSTSLVGLPSAGLQNIEALYIQNTHTLKTIPSIYNFRNLQRA
YLTHSFHCCAFQFPSRHDPQRHAQRMLEIEKWRKQCKSDSGTRKERSTLD
NPFNMPEDFGSFGGTDDSATDITPITFASFDYMADDTMNKGTFHEKIILN
PGDDSSAELCGNFTFRKPNIECYPMPNDLNPCEDVMGYQWLRISVWIVVA
LAVVGNVAVLTVILSIRPESTPVPRFLMCHLAFADLCLGLYLLLVACIDA
HSMGEYFNFAYDWQYGLGCKVAGFLTVFASHLSVFTLTVITIERWLAITQ
AMYLNHRIKLRPAALIMLGGWIYSMLMSSLPLFGISNYSSTSICLPMENR
DVYDTIYLIAILGSNGVAFSIIAVCYAQIYLSLGRETRQAHQNSPGELSV
AKKMALLVFTNFACWSPIAFFGLTALAGYPLINVTKSKILLVFFYPLNSC
ADPYLYAILTSQYRQDLFTLLSKLGLCQQSALKYKDSLSGQATTRFTIHG
SIQRHSSLTCKMQTVMGAETQKMLKNSEDYVASFLDH
BO31382.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lgr1-PB | 831 | CG7665-PB | 1..831 | 1..831 | 4354 | 100 | Plus |
| Lgr1-PA | 831 | CG7665-PA | 1..831 | 1..831 | 4354 | 100 | Plus |
| rk-PA | 1360 | CG8930-PA | 364..1031 | 119..770 | 803 | 31.1 | Plus |
| CG34411-PB | 806 | CG34411-PB | 447..759 | 472..777 | 329 | 30.3 | Plus |
| CG34411-PC | 809 | CG34411-PC | 450..762 | 472..777 | 329 | 30.3 | Plus |
