Clone BO31394 Report

Search the DGRC for BO31394

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:313
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptSp7-RB
Protein status:BO31394.pep: Imported from assembly
Sequenced Size:757

Clone Sequence Records

BO31394.complete Sequence

757 bp assembled on 2012-03-26

GenBank Submission: KX797904

> BO31394.complete
GAAGTTATCAGTCGACATGGCACTGCTTGAGTACGTGGATAACAGGGGAC
GGCGGGAACTCAGTTGCGGTGGCAGTTTGATCAACAATCGTTACGTTCTT
ACCGCCGCCCATTGCGTCATTGGTGCGGTGGAAACGGAAGTAGGTCACCT
AACTACCGTTCGGTTGGGGGAATACGATACCAGCAAGGACGTGGACTGCA
TAGATGACATTTGCAACCAGCCCATCCTACAATTGGGCATCGAACAGGCC
ACTGTACATCCCCAATATGATCCTGCCAACAAGAACCGCATTCACGACAT
TGCCTTATTGCGATTAGATCGGCCCGTTGTGCTTAATGAGTATATTCAGC
CGGTTTGTTTGCCTTTGGTAAGCACACGAATGGCAATCAATACCGGGGAG
CTCTTGGTGGTCAGCGGGTGGGGCCGAACCACAACAGCCCGCAAGAGCAC
CATAAAGCAGCGATTGGATCTGCCGGTGAATGACCACGATTACTGCGCAC
GAAAGTTCGCCACGAGGAATATCCACCTGATCAGTTCCCAGCTCTGTGTT
GGCGGGGAATTCTACCGCGACAGCTGTGATGGCGACTCCGGCGGACCGCT
GATGCGAAGGGGTTTTGACCAGGCTTGGTACCAGGAGGGCGTGGTCTCCT
TTGGCAACCGCTGCGGACTAGAGGGTTGGCCAGGTGTCTACACTCGGGTA
GCCGACTACATGGACTGGATCGTGGAGACCATTCGTCCCGCAAGCTTTCT
AGACCAT

BO31394.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-RF 1176 CG3066-PF 451..1173 17..739 3615 100 Plus
Sp7-RE 1176 CG3066-PE 451..1173 17..739 3615 100 Plus
Sp7-RA 1176 CG3066-PA 451..1173 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-RF 1565 CG3066-RF 606..1328 17..739 3615 100 Plus
Sp7-RE 1418 CG3066-RE 606..1328 17..739 3615 100 Plus
Sp7-RA 1851 CG3066-RA 1039..1761 17..739 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7763033..7763336 436..739 1520 100 Plus
3R 32079331 3R 7762635..7762921 151..437 1435 100 Plus
3R 32079331 3R 7762457..7762565 42..150 545 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:14:59 has no hits.

BO31394.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:23 Download gff for BO31394.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RC 1127..1849 17..741 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:22 Download gff for BO31394.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 1039..1761 17..741 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:23:37 Download gff for BO31394.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 1039..1761 17..741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:23:37 Download gff for BO31394.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7762369..7762393 17..41 100 -> Plus
3R 7762457..7762565 42..150 100 -> Plus
3R 7762635..7762921 151..437 100 -> Plus
3R 7763035..7763336 438..741 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:22 Download gff for BO31394.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3588091..3588115 17..41 100 -> Plus
arm_3R 3588179..3588287 42..150 100 -> Plus
arm_3R 3588357..3588643 151..437 100 -> Plus
arm_3R 3588757..3589058 438..741 99   Plus

BO31394.pep Sequence

Translation from 16 to 757

> BO31394.pep
MALLEYVDNRGRRELSCGGSLINNRYVLTAAHCVIGAVETEVGHLTTVRL
GEYDTSKDVDCIDDICNQPILQLGIEQATVHPQYDPANKNRIHDIALLRL
DRPVVLNEYIQPVCLPLVSTRMAINTGELLVVSGWGRTTTARKSTIKQRL
DLPVNDHDYCARKFATRNIHLISSQLCVGGEFYRDSCDGDSGGPLMRRGF
DQAWYQEGVVSFGNRCGLEGWPGVYTRVADYMDWIVETIRPASFLDH

BO31394.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-PF 391 CG3066-PF 151..391 1..241 1294 100 Plus
Sp7-PE 391 CG3066-PE 151..391 1..241 1294 100 Plus
Sp7-PA 391 CG3066-PA 151..391 1..241 1294 100 Plus
CG9733-PB 417 CG9733-PB 175..416 1..240 578 46.9 Plus
CG9733-PA 418 CG9733-PA 176..417 1..240 578 46.9 Plus