Clone BO31501 Report

Search the DGRC for BO31501

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:315
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptRab9D-RA
Protein status:BO31501.pep: Imported from assembly
Sequenced Size:625

Clone Sequence Records

BO31501.complete Sequence

625 bp assembled on 2012-04-18

GenBank Submission: KX798972

> BO31501.complete
GAAGTTATCAGTCGACATGAGCCAATACGACAATCCGTTTAAGATTATCC
TCCTGGGTGACAGCGGCGTAGGCAAAACCTGCCTGCTGATGCGTTTCTCG
GATAACCAATTCACCACAAGACACCGGAGCACTGTGGGCTTGGATAGAAG
GGAGTGCAGCGTGGAGTTTGCCGATTGGAGGATGGGGAGGATGCTGCAAG
TCTGGGACACCTCCGACGACGAGCGCTTCAAATTGCTGAAGGCGACCCAA
TGTCGCAGTGCCCATGGCATACTGCTCGTCTACGACATAACGTCGTCCAA
AAGTTTCCAAAACATCGATGGCTGGATGAAGGAGATACGGCGCCTGTGTC
CGGATAAGGTAATTGTCCTGCTGGTGGGCAACAAAAGTGATGATCCGAAC
CATCGCCAGGTGAGCATGGCGCAGGGGTTCAACTATGCCCATCGTCAGTC
AATCTGCTTTGAAGAGGTTTCCGCCAAGAGTGGAAGGAATGTATATGACA
TATTTAGCTCGTTGGCAATGGACATATATACATATCGTCGTGTACATTAC
AACCCGTTCAGCTTGACATCTTGGCAGGAAGAGGAGGACGCTGCAGAGTC
ACTGGATGCAAGCTTTCTAGACCAT

BO31501.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9D-RA 594 CG32678-PA 1..591 17..607 2955 100 Plus
Rab9E-RA 594 CG32673-PA 1..591 17..607 2880 99.2 Plus
Rab9Fa-RA 594 CG32671-PA 1..591 17..607 2880 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9D-RA 897 CG32678-RA 94..684 17..607 2955 100 Plus
Rab9E-RA 889 CG32673-RA 86..676 17..607 2880 99.2 Plus
Rab9Fa-RA 871 CG32671-RA 68..658 17..607 2880 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10589182..10589772 17..607 2955 100 Plus
X 23542271 X 10661168..10661758 607..17 2880 99.2 Minus
X 23542271 X 10950373..10950963 607..17 2880 99.2 Minus
X 23542271 X 10622568..10623158 607..17 2805 98.3 Minus
X 23542271 X 10417496..10418080 17..607 1620 86 Plus
X 23542271 X 10951938..10952419 504..17 1070 81.8 Minus
Blast to na_te.dros performed on 2014-11-28 05:00:31 has no hits.

BO31501.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-18 21:42:29 Download gff for BO31501.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9D-RA 94..684 17..609 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:28 Download gff for BO31501.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9D-RA 94..684 17..609 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:41:50 Download gff for BO31501.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9D-RA 94..684 17..609 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:41:50 Download gff for BO31501.complete
Subject Subject Range Query Range Percent Splice Strand
X 10589182..10589772 17..609 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:28 Download gff for BO31501.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10483215..10483805 17..609 99   Plus

BO31501.pep Sequence

Translation from 16 to 625

> BO31501.pep
MSQYDNPFKIILLGDSGVGKTCLLMRFSDNQFTTRHRSTVGLDRRECSVE
FADWRMGRMLQVWDTSDDERFKLLKATQCRSAHGILLVYDITSSKSFQNI
DGWMKEIRRLCPDKVIVLLVGNKSDDPNHRQVSMAQGFNYAHRQSICFEE
VSAKSGRNVYDIFSSLAMDIYTYRRVHYNPFSLTSWQEEEDAAESLDASF
LDH

BO31501.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9D-PA 197 CG32678-PA 1..197 1..197 1044 100 Plus
Rab9E-PA 197 CG32673-PA 1..197 1..197 1032 98 Plus
Rab9Fa-PA 197 CG32671-PA 1..197 1..197 1028 98.5 Plus
Rab9Db-PA 197 CG9807-PA 1..197 1..197 1018 97 Plus
RabX2-PA 195 CG2885-PA 1..195 1..197 688 71.7 Plus