BO31533.complete Sequence
565 bp assembled on 2012-04-18
GenBank Submission: KX799722
> BO31533.complete
GAAGTTATCAGTCGACATGCCGGCCTACCACTCGCAGATCAAGGAAGTGC
GCCAGCAGGTGGGCAACATGGCCATCCTGCCGCTGAGGACGCAGGTGCGC
GGGCCAGCGCCCAGTGCGAATATTGAGAGCGACATCATTGATGAGTCACT
GTACTACTTCAAAGCCAATGTCTTCTTTCGCACGTACGAAATCAAGTCCG
ACGTGGATCGCGTGCTCATCTATGTGACGCTCTACATAACAGAGTGCCTC
AAGAAGCTCAATCGCTCCACGAGCAAGGCCCAGGGACAGCAGGACATGTA
CAGCCTGGCCATCTCCAAGTTCGACATTCCCGGCGATGCTGGCTTCCCAT
TGAACGCCGTCTATGCCAAGCCGCAAACGGCCCAGGATGCGGATCTGATG
CGCCAGTACCTGCTGCAGCTGCGCCACGAAACCGGCAACCGGGTACTGGA
GAAGGTCTTCAACACCGAGGATGGCAAGCCCAATAAATGGTGGACCTGCT
TCGCGAAGAAAAAGTTCATGGAGAAGAGTCTGGCTGGACCTGGACAAGCA
AGCTTTCTAGACCAT
BO31533.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:05:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc3A-RE | 534 | CG4560-PE | 1..531 | 17..547 | 2655 | 100 | Plus |
| Arpc3A-RC | 534 | CG4560-PC | 1..531 | 17..547 | 2655 | 100 | Plus |
| Arpc3B-RA | 525 | CG8936-PA | 42..519 | 58..544 | 435 | 73.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc3A-RE | 1123 | CG4560-RE | 117..649 | 15..547 | 2665 | 100 | Plus |
| Arpc3A-RC | 814 | CG4560-RC | 117..649 | 15..547 | 2665 | 100 | Plus |
| Arpc3B-RC | 693 | CG8936-RC | 139..616 | 58..544 | 435 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15835195..15835547 | 195..547 | 1765 | 100 | Plus |
| 3R | 32079331 | 3R | 15834912..15835086 | 22..196 | 875 | 100 | Plus |
| X | 23542271 | X | 17104648..17104808 | 544..384 | 310 | 79.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:05:25 has no hits.
BO31533.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-18 21:42:50 Download gff for
BO31533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3A-RC | 119..649 | 17..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:11 Download gff for
BO31533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3A-RC | 119..649 | 17..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:43:38 Download gff for
BO31533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3A-RC | 119..649 | 17..549 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:43:38 Download gff for
BO31533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15834907..15835086 | 17..196 | 98 | -> | Plus |
| 3R | 15835197..15835547 | 197..549 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:11 Download gff for
BO31533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11660629..11660808 | 17..196 | 98 | -> | Plus |
| arm_3R | 11660919..11661269 | 197..549 | 99 | | Plus |
BO31533.pep Sequence
Translation from 16 to 565
> BO31533.pep
MPAYHSQIKEVRQQVGNMAILPLRTQVRGPAPSANIESDIIDESLYYFKA
NVFFRTYEIKSDVDRVLIYVTLYITECLKKLNRSTSKAQGQQDMYSLAIS
KFDIPGDAGFPLNAVYAKPQTAQDADLMRQYLLQLRHETGNRVLEKVFNT
EDGKPNKWWTCFAKKKFMEKSLAGPGQASFLDH
BO31533.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc3A-PE | 177 | CG4560-PE | 1..177 | 1..177 | 923 | 100 | Plus |
| Arpc3A-PC | 177 | CG4560-PC | 1..177 | 1..177 | 923 | 100 | Plus |
| Arpc3B-PA | 174 | CG8936-PA | 1..173 | 1..176 | 721 | 73.9 | Plus |
| Arpc3B-PC | 157 | CG8936-PC | 1..156 | 18..176 | 666 | 76.1 | Plus |
| Arpc3B-PB | 157 | CG8936-PB | 1..156 | 18..176 | 666 | 76.1 | Plus |
