Clone BO31542 Report

Search the DGRC for BO31542

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:315
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG3760-RB
Protein status:BO31542.pep: Imported from assembly
Sequenced Size:829

Clone Sequence Records

BO31542.complete Sequence

829 bp assembled on 2012-04-18

GenBank Submission: KX799230

> BO31542.complete
GAAGTTATCAGTCGACATGGCCGAACTGGACGATTTCTTCGCGAAAAAGG
ACAAGAAGAAGTCCAAGAACAAGACTAAGTTCGTGACCGCCGACGAGATG
GTGAAGAACCTGGAGGACGGCACCAAGCGCGAGGTGGTCAAGCCCAAAAA
ACCTGAGGTAGCCGCTGGCGGCGTGGCAGTAGTAGGCGAAAACGAGAATA
GCGGCACCAAGGTGCCAGAGTCCGCCCCGCCCGTCGAGGAGGAATGGAAG
GAGTTCGAGGAGGAGCAGCGCAAGGACTACAGTGGCTTAAAGATCGGCCA
GCTGAGCACCATAACTGCCCAGGAAAGTTCCGAGTCGCAAGCTGCTCGAG
TGCCCTCTGCCCCGGACGGCGGCAACTACAATGAGGACGATGAGGACAGC
AATGGGTATGACAACGCGGACGTAAACAAGGAGCGCGTCGGCCACGGACC
CTGGAAAAAAGTTGTCCCAGCCGAGGAGGTAATGCAGATTCCGGTGCCCG
TGGAGGTGGAAAAGCACTCGTCCAAGACCTACGTTTCACCCGCGCTACGA
TACAGCCAGCAGGCCGGAAGTGGACTGGGAGGCGGCCCTACTGGGGGGGC
ATTGCGTCCACGACGCGCCGCCCCCGACATCACCAATACCGAGTTTTTCC
CAACACTAAGTGCGGCGCGTCCGGAGGAACAGCGCAAGAAGAAAAACGAA
CCCGCCTTCGAAGAAGTCCGTCACGGAAGCCGGTTCCAGCGTGTTCAGGA
GTCCACGGCTGCCCCGGTGGCGGCCTCCAACCGATTCCAGTCGCTTGACG
ACGAAGCAAGCGCAAGCTTTCTAGACCAT

BO31542.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3760-RC 798 CG3760-PC 1..795 17..811 3915 99.5 Plus
CG3760-RB 798 CG3760-PB 1..795 17..811 3915 99.5 Plus
CG3760-RD 795 CG3760-PD 1..792 17..811 3835 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3760-RC 1240 CG3760-RC 201..996 16..811 3920 99.5 Plus
CG3760-RB 1128 CG3760-RB 89..884 16..811 3920 99.5 Plus
CG3760-RD 1039 CG3760-RD 89..881 16..811 3840 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24939271..24939525 557..811 1230 98.8 Plus
2R 25286936 2R 24938970..24939217 309..556 1210 99.2 Plus
2R 25286936 2R 24938460..24938673 16..229 1070 100 Plus
2R 25286936 2R 24938759..24938842 229..312 420 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:06:55 has no hits.

BO31542.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-18 21:42:56 Download gff for BO31542.complete
Subject Subject Range Query Range Percent Splice Strand
CG3760-RB 123..917 17..813 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:25 Download gff for BO31542.complete
Subject Subject Range Query Range Percent Splice Strand
CG3760-RB 90..884 17..813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:44:10 Download gff for BO31542.complete
Subject Subject Range Query Range Percent Splice Strand
CG3760-RB 90..884 17..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:44:10 Download gff for BO31542.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24939271..24939525 557..813 98   Plus
2R 24938461..24938673 17..229 100 -> Plus
2R 24938760..24938842 230..312 100 -> Plus
2R 24938974..24939217 313..556 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:25 Download gff for BO31542.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20825984..20826196 17..229 100 -> Plus
arm_2R 20826283..20826365 230..312 100 -> Plus
arm_2R 20826497..20826740 313..556 99 -> Plus
arm_2R 20826794..20827048 557..813 98   Plus

BO31542.pep Sequence

Translation from 16 to 829

> BO31542.pep
MAELDDFFAKKDKKKSKNKTKFVTADEMVKNLEDGTKREVVKPKKPEVAA
GGVAVVGENENSGTKVPESAPPVEEEWKEFEEEQRKDYSGLKIGQLSTIT
AQESSESQAARVPSAPDGGNYNEDDEDSNGYDNADVNKERVGHGPWKKVV
PAEEVMQIPVPVEVEKHSSKTYVSPALRYSQQAGSGLGGGPTGGALRPRR
AAPDITNTEFFPTLSAARPEEQRKKKNEPAFEEVRHGSRFQRVQESTAAP
VAASNRFQSLDDEASASFLDH

BO31542.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3760-PC 265 CG3760-PC 1..265 1..265 1367 100 Plus
CG3760-PB 265 CG3760-PB 1..265 1..265 1367 100 Plus
CG3760-PD 264 CG3760-PD 1..264 1..265 1350 99.6 Plus
CG3760-PA 271 CG3760-PA 1..271 1..265 1350 97.8 Plus
CG4892-PA 190 CG4892-PA 28..185 67..217 144 29.4 Plus