BO31587.complete Sequence
3046 bp assembled on 2012-04-30
GenBank Submission: KX795692
> BO31587.complete
GAAGTTATCAGTCGACATGGAAGCAACGATGGATACGGACCATGCGAACC
TAAATGACTTCAGGGATCGCGATCTGGCCACGCGCATGCGCCGCTGCAAT
TACGAAAAATACAAATCCTTGGTGCGCATGCACCTATCGTTTGAATTGGA
GCTCAATACGGATGAGTTCGATCTCCCCTGTCACGAGATTGTCTACGAGG
ACAAGGGCAAGCTGAAAAAGTGGAACCGCCTGTCTAAAAAACATCGTTTG
GGACATGGAGCAGCTGCCACATCCTGTGCCGCCGGCTCCGCCAGTAAATC
CGTGGGTAATAGTCCCACAGAGACACTGCAACAGCAGATTGATCCGGGAT
TCTTAATGCATCTGCAAGAGCTCAAGGAGTTCCTAATGCTGGAGAAGAAT
CTCACCCAGGAAGGCCTATTCCGCAAGGCTGGTGCGGTGTCACGACAAAA
CGAACTTCGGATGCACATCCAGCACGACAAACCACTGAATTTGGAACTTG
CGGGCTTCTCCGCTCACGATTGCGCGACCGTTTTCAAAGGTTTTCTATCC
GAACTTCCAGAACCGCTGCTTACGGATGCCCACTATCCGGCGCATCTGCA
GATAGCCCCACTCTGCCAGGCGCTCAATGGTCAGACGACTGCCACTGCTG
AGCGTCAACAACATCTTCTCAACTCCGTGCAGCTGCTACTTCTCCTCCTG
CCCGAAGAACATCGTGAACTTCTTCAGCACATCATTGAGATGCTGCATGC
TGTGGCCAAGCATGAGAAAAGCAACAAGATGAGCGCCGATAACTTGGCCA
CTCTCTTCACACCGCACCTAATTTGCCCAAGGCAACTGCCACCCGAGGTC
CTGCACTACCAGGCCAAGAAAATGTCCAGCATCGTGACCTATATGATCGT
CCGTGGACTGGACATCTTCGAGGTGCCTGGAAAGCTGTCTACCGACATCC
GGGCGTACTTTCTCGAGCGCAAAAGAAAGAAAACCATGTCGCCGGAACAA
ACGCTTGACGAGTCCATCTCGGACGTCTCGACGGTCAACACGGTGTACAC
TTTTGTAGACCGAGCCGCCACTGCAGCGGCCACCAATACGAACAATACGG
ACACGGAGCTGGCGCAACTTTATGCCCATATCCAGAGCATGCCGGAGTCC
TCTAAGAAGAGGCGTTTGATTAAGCAGTTCAACAAGCAAAATGGGCAGGG
CACACCGTTGCAACTGGTGGTAATGAATCGTTTGAAGAACAACGAGGCCA
CTCGAAGTGCCAAGTCCCTGGGAGATTCCATTAAGAAGCACATTTTCCAC
AAGAGCCTCATGTCGCGGACTCCAAAAAGAGTGCCACCCAGTTTTCATTT
GGCTAGTGGATCCGAGACGCCCAATATGTCGCATGTGAAACCGCCCAAGA
TGCGGGTGCTTTTTCAGAGCCCCACGCCACCCACACCCACCTCATCGACC
ATCACCAGCGTCAGCCTGTCCACTAACACTCGGCATCAGCTTCAGAAATC
CATCTCATCTGCTTCCCTCAAGATCGAATCCTCGTCTTCGGACAGCAGCT
CTAGCTGTGCGACCAGCGGTAGTATCTCTGCTCCAGTCAGTCGACAGCAA
TCGAAAGAATCGCCTTCTGGCAATGGAGCTGCTGGTGCTTCCGGCCAGGA
ACTGGATGAGATCGATGCCGATTGCTGCGTGACGCCTTTAAAGATCATGT
CAGCGGTTGCAAAGCAGCTAATTGACAAGAAGAGCGTTGCCTGGGACGAG
CACCGACTACTGGAGATTGAGGAGTACTCGAATCCCTCAACGCCCGTTCA
GCAATCGACGCGCTATAAGTCGGAGCCTAATCTGTCAAGTATCCTGCCGC
AGGTGGACGCAGAGGAAGAGGACGACGGCGCACTGACGCCCATTGTCGAG
GGCCGCAGTACCATGGTAGCTAGCAGCAGCCATATGGGCAGATCAATAAC
CCGAAAATTGATGAAGGGCGTTAGCATGGGTAATCTTAGATTCCCATTCA
GTACGCCGGAGACAACCAAACGACTGGTGCGAAGTGTTTCTGCCACGCTC
AGGAGGCGCCCCAGTGGCGAAGAAAGCAAGCCATGCCCATTGGCAGCGGA
TGCACCACTTCTGGAGGATGTAGACGATAGCGATGAAGACGACGACCATC
ATGGGGCGGTGGATGAGGATGATGATGATACACTTTCGGAAAACAATGGC
AGCTCCAACGAGCTGCCCGCCATGAGCCTGGGCTATCAGCAGATACTACA
GAGCAGCGTATATCGCAACATGGATCTCATTACGAGCACACCAGCTCTGC
ATTTGGGTCGCCGTTCCATGTCGCCCATCACCAAGTCAACCCAACGCATG
CCTAAGGCGATGCAGGAATCTATCATGACTCCCCGATCCCGAAAACCGGT
GATGTTGCTTACCGCCTTAGCTGGCAATGGCGACAAGCAGCTAAATCTGA
GCTTCGCCGAGCAAGATGAGCCGGATTCGATTGGTGGCACGCCGACCAAG
CAACTGGAGCCACCATCGCTGCACAGTGAGGATGCCACATCACTGGGGGG
ATATGCGGATATCCTAGGGCAGCATCAGAGCTTTGCTCTCTTTAATCCCA
GAGAGCGTACGACCAGCAGTAGCAACAGCAATGAAGACTCAAAGCCCTCA
AACGCCTTATCCAGTGATTTCAAGGAATATTTGCTAACGCGCAGTGTTCT
TACCGCCAGTCCGGCTGATTTATCATTTGCCAGTCGGTCGGATGATTTCG
GTGGAGCCAGCACCACGCAGGACATCGACGACTTGGACGAGTCCGATCTG
AGCCCCAGTCTGCTCTACTGCCTGGACGGAAATGAGCCAACTTTAGCCTC
ACCCTTTGGCAACAGCAACGGCAGGAAGCGATCGGCGGGCACACCCCTAA
AGTCTACGCTAATTACCAACCTTGACGCCGACAACAAGGAAAACATGGAG
AATCTACAGGAGGATCATTCGCGCACCAAAAAGCTGCTAATTACTTCTCC
CGAGAAGTATCCGGGCGAAACGGCCCTCGCAAGCTTTCTAGACCAT
BO31587.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP54D-RC | 3015 | CG6477-PC | 1..3012 | 17..3028 | 14940 | 99.7 | Plus |
| RhoGAP54D-RA | 3015 | CG6477-PA | 1..3012 | 17..3028 | 14940 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP54D-RC | 3595 | CG6477-RC | 334..3346 | 16..3028 | 14945 | 99.7 | Plus |
| RhoGAP54D-RA | 3791 | CG6477-RA | 530..3542 | 16..3028 | 14945 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17587532..17588533 | 2366..1365 | 4935 | 99.5 | Minus |
| 2R | 25286936 | 2R | 17589053..17589854 | 1200..399 | 3995 | 99.9 | Minus |
| 2R | 25286936 | 2R | 17586674..17587028 | 3028..2674 | 1775 | 100 | Minus |
| 2R | 25286936 | 2R | 17587091..17587401 | 2674..2364 | 1555 | 100 | Minus |
| 2R | 25286936 | 2R | 17589908..17590139 | 398..167 | 1145 | 99.6 | Minus |
| 2R | 25286936 | 2R | 17588620..17588787 | 1366..1199 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 17590204..17590355 | 167..16 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:35:37 has no hits.
BO31587.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:17 Download gff for
BO31587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RA | 529..3540 | 17..3030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:19 Download gff for
BO31587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RA | 531..3542 | 17..3030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:07:28 Download gff for
BO31587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RA | 531..3542 | 17..3030 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:07:28 Download gff for
BO31587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17590206..17590354 | 17..165 | 100 | | Minus |
| 2R | 17586670..17587028 | 2674..3030 | 99 | <- | Minus |
| 2R | 17587092..17587399 | 2366..2673 | 100 | <- | Minus |
| 2R | 17587533..17588531 | 1367..2365 | 99 | <- | Minus |
| 2R | 17588620..17588786 | 1200..1366 | 100 | <- | Minus |
| 2R | 17589054..17589854 | 399..1199 | 99 | <- | Minus |
| 2R | 17589908..17590140 | 166..398 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:19 Download gff for
BO31587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13474175..13474533 | 2674..3030 | 99 | <- | Minus |
| arm_2R | 13474597..13474904 | 2366..2673 | 100 | <- | Minus |
| arm_2R | 13475038..13476036 | 1367..2365 | 99 | <- | Minus |
| arm_2R | 13476125..13476291 | 1200..1366 | 100 | <- | Minus |
| arm_2R | 13476559..13477359 | 399..1199 | 99 | <- | Minus |
| arm_2R | 13477413..13477645 | 166..398 | 99 | <- | Minus |
| arm_2R | 13477711..13477859 | 17..165 | 100 | | Minus |
BO31587.pep Sequence
Translation from 16 to 3046
> BO31587.pep
MEATMDTDHANLNDFRDRDLATRMRRCNYEKYKSLVRMHLSFELELNTDE
FDLPCHEIVYEDKGKLKKWNRLSKKHRLGHGAAATSCAAGSASKSVGNSP
TETLQQQIDPGFLMHLQELKEFLMLEKNLTQEGLFRKAGAVSRQNELRMH
IQHDKPLNLELAGFSAHDCATVFKGFLSELPEPLLTDAHYPAHLQIAPLC
QALNGQTTATAERQQHLLNSVQLLLLLLPEEHRELLQHIIEMLHAVAKHE
KSNKMSADNLATLFTPHLICPRQLPPEVLHYQAKKMSSIVTYMIVRGLDI
FEVPGKLSTDIRAYFLERKRKKTMSPEQTLDESISDVSTVNTVYTFVDRA
ATAAATNTNNTDTELAQLYAHIQSMPESSKKRRLIKQFNKQNGQGTPLQL
VVMNRLKNNEATRSAKSLGDSIKKHIFHKSLMSRTPKRVPPSFHLASGSE
TPNMSHVKPPKMRVLFQSPTPPTPTSSTITSVSLSTNTRHQLQKSISSAS
LKIESSSSDSSSSCATSGSISAPVSRQQSKESPSGNGAAGASGQELDEID
ADCCVTPLKIMSAVAKQLIDKKSVAWDEHRLLEIEEYSNPSTPVQQSTRY
KSEPNLSSILPQVDAEEEDDGALTPIVEGRSTMVASSSHMGRSITRKLMK
GVSMGNLRFPFSTPETTKRLVRSVSATLRRRPSGEESKPCPLAADAPLLE
DVDDSDEDDDHHGAVDEDDDDTLSENNGSSNELPAMSLGYQQILQSSVYR
NMDLITSTPALHLGRRSMSPITKSTQRMPKAMQESIMTPRSRKPVMLLTA
LAGNGDKQLNLSFAEQDEPDSIGGTPTKQLEPPSLHSEDATSLGGYADIL
GQHQSFALFNPRERTTSSSNSNEDSKPSNALSSDFKEYLLTRSVLTASPA
DLSFASRSDDFGGASTTQDIDDLDESDLSPSLLYCLDGNEPTLASPFGNS
NGRKRSAGTPLKSTLITNLDADNKENMENLQEDHSRTKKLLITSPEKYPG
ETALASFLDH
BO31587.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP54D-PC | 1004 | CG6477-PC | 1..1004 | 1..1004 | 5128 | 100 | Plus |
| RhoGAP54D-PA | 1004 | CG6477-PA | 1..1004 | 1..1004 | 5128 | 100 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 380..1072 | 305..983 | 164 | 19.4 | Plus |
| conu-PI | 629 | CG17082-PI | 390..583 | 124..319 | 160 | 24.2 | Plus |
| conu-PG | 629 | CG17082-PG | 390..583 | 124..319 | 160 | 24.2 | Plus |
