Clone BO31608 Report

Search the DGRC for BO31608

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:316
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG17271-RB
Protein status:BO31608.pep: Imported from assembly
Sequenced Size:844

Clone Sequence Records

BO31608.complete Sequence

844 bp assembled on 2012-04-18

GenBank Submission: KX797536

> BO31608.complete
GAAGTTATCAGTCGACATGCAGATGCGCGTCACGGAATTGCCAGCAGTTC
AGCTGCTGCTGCCCCTAATCCTGATTGGATTGGCCAGCGGACAGCGCGTC
GCTCCCGGAGTGAATCCGCAGCACTATCAACAAGTGCCGCAGCAGGTGCC
GCAGCACCACCCACCGCCACCACCGCAGCACCACCAGCCGCAGTACCAGC
AACAGGTCCACTCAGCACCCGGTGTGCCGCCCCAGCAATACCAATACGAA
CAGGTTCAAGTTCCCGTGCAACAGCAGGCACCGGTCCAATATCAGCAAGT
TCCTGTGCAGCAGCAGCAGCAGCAACATCAACCAATCCACCAGCAACCGA
CGATGCAGCAACAGCAACAGCCGCAGCAGGGGCACCACCAGCAGGCAGGT
GGCCACCACCATGGGCAACCGCAGCAAGTCCTAAACACCGGCAACATTCA
GCAGGAGCGCGCTCACATCCAGGAGCACATGCAAGTGCCAATCGATACGA
GCAAGATGTCCGAGGCTGAGCTGCAGTTCCACTACTTCAAGATGCACGAC
TCGGACAACAACAACAAGTTGGACGGCTGCGAGCTGATCAAATCGCTGAT
CCATTGGCACGTCAAGGATAGTGGAGAAAAACCAGCCGAGGCACACCAGG
AAGGCCACGCCGAGGGCCAAGCGCAGCAGCCCGATGATCACAAATCCGGA
TCTGTGTACACGGACAAGGCTCTGGAGGACACCATTGACTATGTGCTGAA
GTCCATGGACCTGAACAACGATGGATTTGTCGACTGGGCCGAGTACCGCA
AGACTGAGGCCAACATTGGCAAGGACGCAAGCTTTCTAGACCAT

BO31608.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17271-RB 813 CG17271-PB 1..810 17..826 4050 100 Plus
CG17271-RA 846 CG17271-PA 1..595 17..611 2975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17271-RB 1098 CG17271-RB 137..947 16..826 4055 100 Plus
CG17271-RA 1550 CG17271-RA 137..732 16..611 2980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20821146..20821366 462..242 1105 100 Minus
3R 32079331 3R 20819280..20819495 826..611 1080 100 Minus
3R 32079331 3R 20820650..20820798 611..463 745 100 Minus
3R 32079331 3R 20821428..20821541 241..128 570 100 Minus
3R 32079331 3R 20821601..20821712 127..16 560 100 Minus
Blast to na_te.dros performed 2014-11-28 05:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3276..3371 254..346 139 63.5 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 632..728 454..356 111 61 Minus
BS 5142 BS BS 5142bp 2047..2118 226..297 108 61.1 Plus

BO31608.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-18 21:43:11 Download gff for BO31608.complete
Subject Subject Range Query Range Percent Splice Strand
CG17271-RB 152..961 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:04 Download gff for BO31608.complete
Subject Subject Range Query Range Percent Splice Strand
CG17271-RB 138..947 17..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:45:18 Download gff for BO31608.complete
Subject Subject Range Query Range Percent Splice Strand
CG17271-RB 138..947 17..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:45:18 Download gff for BO31608.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20821146..20821366 242..462 100 <- Minus
3R 20821428..20821541 128..241 100 <- Minus
3R 20821601..20821711 17..127 100   Minus
3R 20819278..20819494 612..828 99 <- Minus
3R 20820650..20820798 463..611 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:04 Download gff for BO31608.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16647150..16647263 128..241 100 <- Minus
arm_3R 16647323..16647433 17..127 100   Minus
arm_3R 16646372..16646520 463..611 100 <- Minus
arm_3R 16646868..16647088 242..462 100 <- Minus
arm_3R 16645000..16645216 612..828 99 <- Minus

BO31608.pep Sequence

Translation from 16 to 844

> BO31608.pep
MQMRVTELPAVQLLLPLILIGLASGQRVAPGVNPQHYQQVPQQVPQHHPP
PPPQHHQPQYQQQVHSAPGVPPQQYQYEQVQVPVQQQAPVQYQQVPVQQQ
QQQHQPIHQQPTMQQQQQPQQGHHQQAGGHHHGQPQQVLNTGNIQQERAH
IQEHMQVPIDTSKMSEAELQFHYFKMHDSDNNNKLDGCELIKSLIHWHVK
DSGEKPAEAHQEGHAEGQAQQPDDHKSGSVYTDKALEDTIDYVLKSMDLN
NDGFVDWAEYRKTEANIGKDASFLDH

BO31608.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17271-PB 270 CG17271-PB 1..270 1..270 1472 100 Plus
CG17271-PA 281 CG17271-PA 1..251 1..264 1146 81.4 Plus
NUCB1-PA 569 CG32190-PA 439..565 35..155 185 41.8 Plus
CG12964-PB 1129 CG12964-PB 330..473 36..159 168 37.5 Plus
CG12964-PC 1129 CG12964-PC 330..473 36..159 168 37.5 Plus
NUCB1-PA 569 CG32190-PA 383..544 26..158 154 37.4 Plus