Clone BO31620 Report

Search the DGRC for BO31620

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:316
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG13516-RA
Protein status:BO31620.pep: Imported from assembly
Sequenced Size:538

Clone Sequence Records

BO31620.complete Sequence

538 bp assembled on 2012-04-18

GenBank Submission: KX796230

> BO31620.complete
GAAGTTATCAGTCGACATGGATCAGAAGCGAGCCATGCTTTATCCGCAAG
TGGATTTCAACGCCCCGACGGCCCCCTCGCCGACGCCAACGAGGGAGTTG
GGCAATCCCATCGCCAACGGCCTGCCCATCGAGGCTCCTCCGTCGTACGA
TGTGGCGGTGTCTGTTCCGGTGGCTCCAGCGGTTTCCGCACCAGCAATCG
CCCCAGCACGACCACCGCCAGTGGTTGTCGTGGAGCAACCAGCCCCACAA
CCACCCACAGTGGTTCCAACAGATACTCTACACTTGGGTCCAAATCGAAG
TAGGGTTCTCTGCCCAGCCTGTGGAGCCAACAAAACTACGAGGATGACAC
ACACGGCTAACTCCAGGACCCATATGGTGGCAGGTCTTCTCTGTTTGGTC
GGATTCTGCTGCTGTGCCTGTTTTGTTCCCTATTGCATGAACAGTTGCCG
TACTGGAAACCACTATTGTCGCAAGTGTAACACCTTCCTGGGAGCCTACA
ATCCAAAGGGGATGAACCGAGCAAGCTTTCTAGACCAT

BO31620.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13516-RB 507 CG13516-PB 1..504 17..520 2475 99.4 Plus
CG13516-RA 507 CG13516-PA 1..504 17..520 2475 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13516-RB 1319 CG13516-RB 455..959 16..520 2480 99.4 Plus
CG13516-RA 1032 CG13516-RA 168..672 16..520 2480 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22669599..22669855 16..272 1270 99.6 Plus
2R 25286936 2R 22669921..22670053 270..402 650 99.2 Plus
2R 25286936 2R 22670144..22670262 402..520 580 99.2 Plus
Blast to na_te.dros performed on 2014-11-28 05:11:32 has no hits.

BO31620.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-18 21:43:14 Download gff for BO31620.complete
Subject Subject Range Query Range Percent Splice Strand
CG13516-RA 145..648 17..522 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:11 Download gff for BO31620.complete
Subject Subject Range Query Range Percent Splice Strand
CG13516-RA 169..672 17..522 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:45:36 Download gff for BO31620.complete
Subject Subject Range Query Range Percent Splice Strand
CG13516-RA 169..672 17..522 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:45:36 Download gff for BO31620.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22669600..22669855 17..272 99 -> Plus
2R 22669924..22670053 273..402 99 -> Plus
2R 22670145..22670262 403..522 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:11 Download gff for BO31620.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18557105..18557360 17..272 99 -> Plus
arm_2R 18557429..18557558 273..402 99 -> Plus
arm_2R 18557650..18557767 403..522 97   Plus

BO31620.pep Sequence

Translation from 16 to 538

> BO31620.pep
MDQKRAMLYPQVDFNAPTAPSPTPTRELGNPIANGLPIEAPPSYDVAVSV
PVAPAVSAPAIAPARPPPVVVVEQPAPQPPTVVPTDTLHLGPNRSRVLCP
ACGANKTTRMTHTANSRTHMVAGLLCLVGFCCCACFVPYCMNSCRTGNHY
CRKCNTFLGAYNPKGMNRASFLDH

BO31620.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13516-PB 168 CG13516-PB 1..168 1..168 929 100 Plus
CG13516-PA 168 CG13516-PA 1..168 1..168 929 100 Plus
CG30273-PB 128 CG30273-PB 19..126 41..162 247 39.3 Plus
CG30269-PB 144 CG30269-PB 6..144 17..164 225 35.8 Plus
CG30269-PA 144 CG30269-PA 6..144 17..164 225 35.8 Plus