Clone BO31660 Report

Search the DGRC for BO31660

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:316
Well:60
Vector:pDNR-Dual
Associated Gene/Transcriptlox2-RA
Protein status:BO31660.pep: Imported from assembly
Sequenced Size:1567

Clone Sequence Records

BO31660.complete Sequence

1567 bp assembled on 2012-04-18

GenBank Submission: KX798444

> BO31660.complete
GAAGTTATCAGTCGACATGTGCGCAATCGAAGATCGAAAGGTCCTCAAGA
TGGGGCTCACTCTTGTGTGCCTGACTTTACTGGCCATTCACATGGCAGAT
GCGGTTGTGCAGCACAGATCCTTGGAGGATGCTCGACAGGAGCGCCAGCG
ATTGGTGCACAGGTACACAAAGGTCCTGAACAAGGAGGAGGGAGCCATAA
GACTGGTGGGCGGAGATAATGAGTACGAAGGCAACATTGAGGTCCTGCAC
AATGGCAAGTGGGGAGCAGTTTGCGATGACGAGTGGGATTCCACCGAAGC
AGACATTGTGTGCCGACAACTGGGTTTTCCCGGCATGCGGAGGTATACGA
GAAGTGGCTTCTTTGGACCCGCTCGTCGTCGCTTCTGGATGGACAACCTC
TTTTGCGAGGGTCACGAGCAGGAACTAGTGGATTGCCATTTCGAGGGCTG
GGGCGAGAACGATTGTGAACCAGGAGAGGCGGCTGGCGTGGTCTGTTACC
CGCCGGAAAATGCACTGATCCCCATGGCAACACCCATCATCCGCGACGAG
GATTTGCCCAAGTACCCGATTCATTCGCGATCACGTTTATACGTGAGACT
GCGAGGCGGAAGATCGCGGATCGAGGGACGAGTGGAGGTCAGTTTGGATG
GCGGTCGATGGGGCAGTGTGTGCGCCGATGGCTGGTCACTTTTGGAGGCC
AATGTCGTGTGCCGACAGCTCGGCCTGGGCTATGCCAGCGAGGCCTTCCA
AACCGATTTCTTTGGTGGCTTCAATGTGTCAAGACCCGTGCTGAGTGGCA
GCGAATGCTATGGCAACGAAACGGAACTGGCTGACTGCCTGCATCATGAT
GCAAGTCAGGGTATCATCAGCTGTCATGGCAATCGGCAGCACGTGGCCGC
TGTGATCTGTGACTATATCGCCCCCGATCTGGTGGTGGATTATCTGGAAA
TCGAACAGACGGCCCATCTGGAGGATAGACCCATGCTGCTGATGCAGTGC
GCCATGGAGGAAAACTGTGTGGCCAACGAGGCGTATCAAATCCAACGGGA
TGATCCCCACTGGCGTTATCGATCTAGGCGATTGCTCAAGTTTACGGCAG
CTGCCATCAATGCGGGCAATGCGGATTTCCGGCCATTCAAGGAGAAGAGC
CAATGGGAGTGGCACATGTGCCATATGCACTTTCACAGCATGGAGGTGTT
TGCCACCTTTGATATCTTCAATTTAAGAGGAATCAAAGTGGCTCAGGGAC
ACAAGGCATCTTTCTGTTTGGAGGACAGTAACTGCCTGCCGGGTGTTGCC
AAGAAGTACAATTGCGCCAACTATGGAGATCAGGGCATTTCCATTAACTG
CTCGGATGTGTACCTGTACAATTTGGATTGCCAATGGGTGGATGTGACAG
ACCTGATTCCCGGCACCTATGTCCTCAAAATAGCCATTAATCCGGAGTTT
AAGGTGGCCGAGATGAACTATGATAACAACGCTGCCATCTGCGATCTGAT
ATACACTGCAAATTTTGCCAGAGTGCAAAACTGCCAGCTGGGGAGACCTG
CAAGCTTTCTAGACCAT

BO31660.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
lox2-RA 1536 CG4402-PA 1..1533 17..1549 7665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
lox2-RA 1729 CG4402-RA 30..1562 17..1549 7665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21790291..21791239 1177..229 4745 100 Minus
2R 25286936 2R 21789790..21790005 1549..1334 1080 100 Minus
2R 25286936 2R 21791337..21791551 231..17 1075 100 Minus
2R 25286936 2R 21790059..21790217 1335..1177 795 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:12:13 has no hits.

BO31660.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-18 21:43:16 Download gff for BO31660.complete
Subject Subject Range Query Range Percent Splice Strand
lox2-RA 105..1637 17..1551 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:15 Download gff for BO31660.complete
Subject Subject Range Query Range Percent Splice Strand
lox2-RA 30..1562 17..1551 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:45:52 Download gff for BO31660.complete
Subject Subject Range Query Range Percent Splice Strand
lox2-RA 30..1562 17..1551 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:45:52 Download gff for BO31660.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21789787..21790004 1335..1551 99 <- Minus
2R 21790060..21790217 1177..1334 100 <- Minus
2R 21790292..21791237 231..1176 100 <- Minus
2R 21791338..21791551 17..230 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:15 Download gff for BO31660.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17678843..17679056 17..230 100   Minus
arm_2R 17677292..17677509 1335..1551 99 <- Minus
arm_2R 17677565..17677722 1177..1334 100 <- Minus
arm_2R 17677797..17678742 231..1176 100 <- Minus

BO31660.pep Sequence

Translation from 16 to 1567

> BO31660.pep
MCAIEDRKVLKMGLTLVCLTLLAIHMADAVVQHRSLEDARQERQRLVHRY
TKVLNKEEGAIRLVGGDNEYEGNIEVLHNGKWGAVCDDEWDSTEADIVCR
QLGFPGMRRYTRSGFFGPARRRFWMDNLFCEGHEQELVDCHFEGWGENDC
EPGEAAGVVCYPPENALIPMATPIIRDEDLPKYPIHSRSRLYVRLRGGRS
RIEGRVEVSLDGGRWGSVCADGWSLLEANVVCRQLGLGYASEAFQTDFFG
GFNVSRPVLSGSECYGNETELADCLHHDASQGIISCHGNRQHVAAVICDY
IAPDLVVDYLEIEQTAHLEDRPMLLMQCAMEENCVANEAYQIQRDDPHWR
YRSRRLLKFTAAAINAGNADFRPFKEKSQWEWHMCHMHFHSMEVFATFDI
FNLRGIKVAQGHKASFCLEDSNCLPGVAKKYNCANYGDQGISINCSDVYL
YNLDCQWVDVTDLIPGTYVLKIAINPEFKVAEMNYDNNAAICDLIYTANF
ARVQNCQLGRPASFLDH

BO31660.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
lox2-PA 511 CG4402-PA 1..511 1..511 2792 100 Plus
lox-PA 360 CG11335-PA 50..352 203..507 745 48.2 Plus
Tequila-PD 1450 CG4821-PD 887..1119 61..276 341 36.6 Plus
Tequila-PF 2379 CG4821-PF 1816..2048 61..276 341 36.6 Plus
Tequila-PG 2792 CG4821-PG 2229..2461 61..276 341 36.6 Plus
Tequila-PD 1450 CG4821-PD 1040..1137 62..160 206 36.4 Plus
Tequila-PF 2379 CG4821-PF 1969..2066 62..160 206 36.4 Plus