BO31684.complete Sequence
2284 bp assembled on 2012-04-30
GenBank Submission: KX799075
> BO31684.complete
GAAGTTATCAGTCGACATGGGCAGTCCATACTACCGCGACATGGATGAGC
CAACCAGTCCGGCCGGAGCGGGTCACCATCGCAGCCGGAGCGCCAGCAGA
CCACCGATGGCCCATGCCATGGACTATCCAAGAACCCGCTACCAATCGCT
GGATCGCGGTGGACTCGTGGATCCCCATGATCGCGAGTTCATACCCATTC
GGGAGCCCCGCGACCGCTCCAGGGACAGATCCCTCGAACGGGGCCTGTAC
CTAGAGGACGAGCTCTATGGCAGATCAGCGCGTCAGAGCCCCAGCGCCAT
GGGTGGATACAATACGGGCATGGGCCCCACATCGGATCGAGCTTATTTGG
GCGACCTGCAGCATCAGAACACCGACCTGCAGCGGGAGCTGGGGAACCTG
AAGCGGGAACTGGAGCTGACTAACCAGAAGCTGGGCAGCTCGATGCACAG
CATCAAGACCTTCTGGTCGCCGGAGCTCAAGAAGGAGCGAGCACTGCGCA
AGGAGGAGAGCGCCAAGTACAGTCTGATCAACGATCAGTTGAAGCTGCTC
AGCACGGAGAACCAGAAACAAGCTATGCTGGTGCGCCAGCTGGAGGAGGA
GCTGCGCCTGCGAATGCGACAGCCCAACCTGGAGATGCAGCAGCAGATGG
AGGCGATCTACGCGGAGAACGACCACTTGCAGCGGGAGATCAGCATCCTG
CGCGAGACGATCAAGGATCTAGAGTGCCGGGTGGAGACCCAGAAGCAAAC
ACTGATTGCCCGCGACGAGAGTATCAAGAAGCTGCTGGAAATGCTGCAGG
CCAAGGGAATGGGCAAAGAGGAGGAGCGTCAGATGTTCCAGCAGATGCAG
GCCATGGCCCAGAAGCAGATGTACAATAACTACACGGGCGCCAGCGGAAG
CAGTCCTCCATTGCCGGACATTATTGGCCAGTACTACGGGCCGGGAAGTC
TGGGTCCGGGCCCCCTGTCCTACGGTTCGGGCAATGGTTACGGCCCGCCC
GGGTACGATCTGTACGGCCCATCGACCTCGACGGCAGCTGGTGGATACGG
ACTGTATGATCCGCAGATCTACGGACCGTGCCAGCAAACCTCGCCCATCC
GGAGAAGGCGCTATAGTATTGCCGGCCTGCCCTCGGCCACCATGTACAAT
GATGTCTACGGCTATCCGGCACCTCCGCTCCAGCAGACCAGCTCCTCGAA
CATTGTGAATTTGTTGAACGAGGCACACAAGTCGATATCGCGCAGCTCGC
AGATACTGAATCTAACGAATCAGGCCCGTCAATTGGGTCAGCTGGTGACC
ACGCCACTGGGAGGCGGAGGAGTTGGCATGGGCCTGGGTCGAGTGGTGTC
CAGTTACCCTACCCTGCATCCGGGAGACACCTCGCCGCCGTACCTCAACG
ATAACCTCATGCAGATGTCCACGAGCTTCTCCTCGCAGCCCAACATGTAC
TTCCAGCCGCAGGCGCAAGTGCAGCAGGTGCTGCCCACCCAGCTGACGGC
GGCCCAGAGTGCCGCCGCAGCGGCAGCCCGACTGCGTCCGGCCTATTCCG
TAACGAATCTGGTGTCCAGTTACCCGACGACGACCGCGGCGGGCTATGGC
TGCAAGTACGGGGGCTACGGGAATCCGTACCAGAGCGATCTGGGCTACGG
CAATCCACTGGCCCCCTTCCAGCAGCGCCAGCTGATGGCCCACCAGTCGC
TGCACGCCTCCAATCCCGCCATTTCGCAGTACTACCAGAACCAGGGAGCC
GCAACCGGAACGGGAGCCTCGGCGGCCGCCCTGGCCTACAACCTGCAGCA
GCAGTTCGCGGGAACGCAACACTACGGCGGCGGATCCCAGGGACCGCCGC
TGGGACACTCGCACATCCAGGCGTCGGTGCAGCAGCAGATGCATCCGCAG
TACCAGTACCATGTGCACCAGCATCAGAATCACCTGCAGACGCATCCGCT
GGCGGCGCTGGCCAACACGAGCGGTCCGTTCGGAGGGACGCTGGCCAGCA
GTGCCAGGGACTATGTGGATGGACTGCATCATGCGGCCCACTCGCACACG
CATCCGCATTCGCATCCGCACCACTCCTCGCATCATTCGCATCACACGGC
ATACCCGCACTCGCATTCGCACCATCAGCAGCAGCAGCCGCATCAAGCCC
ACCATCACCACCATCTGCCATACTCGAAACTAGACTTAGATTACCCGAAA
CTGCCGCAAGAGCATAAGCGACAAGTAAGTTTTAAATTTGACGTAGACAC
GCTATCCCTAGACTCCGCAAGCTTTCTAGACCAT
BO31684.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brp-RJ | 6717 | CG42344-PJ | 139..2346 | 17..2224 | 11040 | 100 | Plus |
| brp-RM | 4497 | CG42344-PM | 1..852 | 17..868 | 4260 | 100 | Plus |
| brp-RH | 5223 | CG42344-PH | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:37:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brp-RJ | 11909 | CG42344-RJ | 940..3147 | 17..2224 | 11040 | 100 | Plus |
| brp-RM | 9436 | CG42344-RM | 549..1400 | 17..868 | 4260 | 100 | Plus |
| brp-RH | 5562 | CG42344-RH | 39..890 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9522935..9524335 | 866..2266 | 7005 | 100 | Plus |
| 2R | 25286936 | 2R | 9510221..9510654 | 132..565 | 2170 | 100 | Plus |
| 2R | 25286936 | 2R | 9510827..9511079 | 561..813 | 1265 | 100 | Plus |
| 2R | 25286936 | 2R | 9509890..9510005 | 17..132 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 9511143..9511199 | 812..868 | 285 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6895 | 2051..2224 | 159 | 54.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6851 | 2040..2168 | 156 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6873 | 2081..2223 | 156 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6844 | 2101..2224 | 150 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6830 | 2119..2225 | 141 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6928 | 2051..2212 | 139 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2553 | 2058..2182 | 135 | 61.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1148 | 1879..1946 | 135 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2395 | 2089..2172 | 132 | 61.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1136 | 2102..2180 | 125 | 62 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 642..725 | 1927..1844 | 123 | 60.7 | Minus |
BO31684.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:22 Download gff for
BO31684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brp-RF | 1161..3410 | 17..2268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:53 Download gff for
BO31684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brp-RJ | 940..3147 | 17..2224 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:08:18 Download gff for
BO31684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brp-RJ | 940..3147 | 17..2224 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:08:18 Download gff for
BO31684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9509890..9510004 | 17..131 | 100 | -> | Plus |
| 2R | 9510221..9510654 | 132..565 | 100 | -> | Plus |
| 2R | 9510832..9511078 | 566..812 | 100 | -> | Plus |
| 2R | 9511144..9511199 | 813..868 | 100 | -> | Plus |
| 2R | 9522938..9524335 | 869..2268 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:53 Download gff for
BO31684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5397395..5397509 | 17..131 | 100 | -> | Plus |
| arm_2R | 5397726..5398159 | 132..565 | 100 | -> | Plus |
| arm_2R | 5398337..5398583 | 566..812 | 100 | -> | Plus |
| arm_2R | 5398649..5398704 | 813..868 | 100 | -> | Plus |
| arm_2R | 5410443..5411840 | 869..2268 | 99 | | Plus |
BO31684.pep Sequence
Translation from 16 to 2284
> BO31684.pep
MGSPYYRDMDEPTSPAGAGHHRSRSASRPPMAHAMDYPRTRYQSLDRGGL
VDPHDREFIPIREPRDRSRDRSLERGLYLEDELYGRSARQSPSAMGGYNT
GMGPTSDRAYLGDLQHQNTDLQRELGNLKRELELTNQKLGSSMHSIKTFW
SPELKKERALRKEESAKYSLINDQLKLLSTENQKQAMLVRQLEEELRLRM
RQPNLEMQQQMEAIYAENDHLQREISILRETIKDLECRVETQKQTLIARD
ESIKKLLEMLQAKGMGKEEERQMFQQMQAMAQKQMYNNYTGASGSSPPLP
DIIGQYYGPGSLGPGPLSYGSGNGYGPPGYDLYGPSTSTAAGGYGLYDPQ
IYGPCQQTSPIRRRRYSIAGLPSATMYNDVYGYPAPPLQQTSSSNIVNLL
NEAHKSISRSSQILNLTNQARQLGQLVTTPLGGGGVGMGLGRVVSSYPTL
HPGDTSPPYLNDNLMQMSTSFSSQPNMYFQPQAQVQQVLPTQLTAAQSAA
AAAARLRPAYSVTNLVSSYPTTTAAGYGCKYGGYGNPYQSDLGYGNPLAP
FQQRQLMAHQSLHASNPAISQYYQNQGAATGTGASAAALAYNLQQQFAGT
QHYGGGSQGPPLGHSHIQASVQQQMHPQYQYHVHQHQNHLQTHPLAALAN
TSGPFGGTLASSARDYVDGLHHAAHSHTHPHSHPHHSSHHSHHTAYPHSH
SHHQQQQPHQAHHHHHLPYSKLDLDYPKLPQEHKRQVSFKFDVDTLSLDS
ASFLDH
BO31684.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:26:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brp-PJ | 2238 | CG42344-PJ | 47..790 | 1..743 | 3925 | 99.1 | Plus |
| brp-PM | 1498 | CG42344-PM | 1..285 | 1..285 | 1459 | 99.6 | Plus |
| brp-PK | 1707 | CG42344-PK | 47..331 | 1..285 | 1459 | 99.6 | Plus |
| brp-PH | 1740 | CG42344-PH | 1..285 | 1..285 | 1459 | 99.6 | Plus |
| brp-PE | 1740 | CG42344-PE | 1..285 | 1..285 | 1459 | 99.6 | Plus |
