BO31686.complete Sequence
2431 bp assembled on 2012-04-30
GenBank Submission: KX795192
> BO31686.complete
GAAGTTATCAGTCGACATGGGCAGTGAGCACTACTGCTTGAGGTGGAACA
ATTACCAATCCAACCTGTTAGGGGTGTTTAGTCAATTACTACAAGACGGG
AGCCTGGTGGACGTCACACTAGTTTGTTCAGAGGGCACATCCATCAGAGC
CCATAAGGTGGTCCTCTCGGCTTGTTCCTCGTACTTCCAGAGCCTGTTCC
TGGAGCACCCCGAAGGACATCTAATTGTGATATTGAAGGACGTCCGTTTT
GCCGAGCTGCAAACCTTAGTTGAATTCATGTACAAGGGCGAGGTGAACGT
GCAATATTGTCAGTTGTCCGCGCTGCTCAAGACAGCCGAATCCCTCAAGG
TCAAGGGCCTGGCCGAGATGACGAACCAGAATACGACGCTGCGCGAACCG
GAACGGGAACCGGATCGCTTGCGTCCGCAGGGCGGCGGCGGTAGCGGCGG
ATCCGCCCACAAGGCGGCCGACAGTCCGGCGGCCGCGCTTGATGCCACAG
CGGCCACACAGGCGGCGACTGCCACGGCAACGGCAACTGCCGCGGCGGCA
ACATCGACCTCAACCTCAGCAACATCTGCGGCGGCGACGGCAGCAGCGAC
AGCAGCAACATCTGCGTCCACAACGGCAACGGCGGCGGCGGGGAGTAGTA
ATACAACAACTACAACGGCGGCAACCACAACAGCAACCTGTGCCACAGCA
GCAACATCTACGGCAGCAACATCCTCATCTTCGTCCGTGACATCAGCAGC
AGCAGCCGCAGCAGCAGCCGCATCAGCATCTGGTGTTGCGCACTCGGAGG
AGGCGACCTCGTCATCATCGTCAACTGGCGGGCAGAAGCGGGAGGCTAGC
GATCGCAGCAGTCCCACGCCCGCCAAACGATCGTCGCGAATGCATCCGGC
GGACAAGGTGGATGTGGCAGAGGATCGGGAACAGGAGCAAAACCAGGCGG
ACGAGCTGCTAAGCGAGGAGCTGCTCGGTCGCAACTTAAAGGACGAGGAG
GATGACGATGTGGATGAGCTAGATGAGAACGAGGAGACGAAGCTGAGGGG
TCGCGATGAGGACGATGACGACGAGGATGAGGAGGAGGACACGCCCATGC
CATTGGATCTCTATCAAAGACCAAATGTCGAGCCAAAAAGCGCCGCAGCA
GCAACAGCAGCGCAGCAGGGCGGCAGCAACAGTCTCAGCGGTAGCAGCAA
CGCTTGCCACACCAACAGCAGCAGCAACAGCAATAATAACAATAACAACA
ACAACAACTCCAGCAGCAACAACAACAACAACACTAGTAGTGGGAAAACC
TCAGCGTCCAGCAATGGCGGCACAGCATCATCGGGCGGCACAGCGGACTC
CGTGGTTGCGGTAGATGACGATGACGACGACGACGATGGTGGCCATCATC
ATCAGCGACAGGTGATGGACGATCGATTGGAGCAGGATGTGGACGAAGAG
GATCTGGACGATGATGTCGTGGTGGTGGGACCTGCCACCGCGATGGCCAG
GGGCATTGCCCAGCGGCTGGCCCACCAGAACCTGCAGCGTCTCCATCACA
CGCACCACCATGCCCAGCACCAGCATTCGCAGCACCACCACCCACATTCG
CAGCACCACCATACGCCGCACCACCAGCAGCACCATACGCACTCGGATGA
CGAGGATGCCATGCCCGTGATTGCCAAGAGCGAGATCCTCGACGATGACT
ACGACGATGAGATGGATCTGGAGGATGACGATGAGGCGGACAACAGCAGC
AACGATTTGGGTCTCAACATGAAAATGGGCAGCGGCGGTGCGGGCGGCGG
CGGTGGCGTAGATCTGTCCACCGGCTCCACATTGATACCCTCGCCATTGA
TCACCCTGCCATCCTCATCGGCGGCGGCGGCGGCAGCTGCAGCGGCAGCA
ATGGAATCGCAGCGCTCCACGCCGGCCATGTCGGCGGCCCAGGCAGCTGG
AGCGGGCGCCTCGGACCTCAGTATTGGTGGCTGCGGCGGTCGACCGGCGT
CCAGGAGCTCACGCGACGGCGGCGGTAACGATGGCGGCAGGGGAGGAGCA
TCCTCCTCCAGCCTGCTTAGCCCGGGAACCGTGGCCAATCTCCTGCCCGT
GCAATCGGTGCCATTGAGTCTCAAGAAGGAGATCGATTGCAGCGAGGACG
ACAATAGCAGTCACAGCAGACACATGCAACAGCGTTCGGCATCAGCTGGC
GGCGGCCTGGGCGGCGACCTTGACTACCGCGCCTCCCACGAGTCGGTAAG
TCTGCGATTTGGCGATAACTTTGACCCTGGCCCAAGCCCTGACCCCGCCC
CTGAATTCCCACCTCTGAAAATACGATTCGAAACGAACCCCTGCCAAAAT
TCGAAAAGAAACTCCAGTCCCAGGAGATGCCTTTCAGTGAATGCTTTTGC
TGCTTCGATAGGTGCAAGCTTTCTAGACCAT
BO31686.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mamo-RC | 2400 | CG45477-PC | 1..2397 | 17..2413 | 11985 | 100 | Plus |
| mamo-RG | 3330 | CG45477-PG | 1..2230 | 17..2246 | 11150 | 100 | Plus |
| mamo-RF | 3330 | CG45477-PF | 1..2230 | 17..2246 | 11150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mamo-RC | 4583 | CG45477-RC | 1969..4369 | 13..2413 | 12005 | 100 | Plus |
| mamo-RG | 8765 | CG45477-RG | 1740..3973 | 13..2246 | 11170 | 100 | Plus |
| mamo-RF | 4535 | CG45477-RF | 864..3097 | 13..2246 | 11170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:38:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13883459..13885227 | 2116..348 | 8845 | 100 | Minus |
| X | 23542271 | X | 13883068..13883365 | 2413..2116 | 1490 | 100 | Minus |
| X | 23542271 | X | 13885307..13885502 | 351..156 | 980 | 100 | Minus |
| X | 23542271 | X | 13901480..13901627 | 160..13 | 740 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2535 | 547..780 | 371 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..3063 | 583..1380 | 362 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2274..2532 | 464..723 | 353 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6952 | 543..776 | 352 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2661 | 494..780 | 331 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6941 | 498..729 | 331 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6923 | 567..771 | 317 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..7020 | 495..781 | 308 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6944 | 525..753 | 307 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6899 | 600..780 | 303 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6928 | 588..785 | 294 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2833 | 543..781 | 276 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2990 | 561..779 | 265 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..3031 | 519..778 | 256 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2510 | 1206..1411 | 247 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6842 | 650..780 | 234 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6864 | 654..778 | 230 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2971 | 1143..1327 | 227 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2604..2889 | 498..774 | 218 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2665 | 498..727 | 207 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..7088 | 498..768 | 207 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6823 | 672..782 | 204 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6806 | 696..780 | 200 | 70.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1163 | 534..636 | 191 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2591..2876 | 497..782 | 181 | 54.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1145 | 546..630 | 173 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1163 | 655..747 | 168 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1514..1588 | 650..724 | 150 | 66.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9031..9280 | 450..695 | 140 | 54.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1160 | 642..729 | 135 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1589 | 546..629 | 134 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1602 | 562..665 | 129 | 61.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 90..250 | 529..695 | 126 | 57.1 | Plus |
BO31686.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:24 Download gff for
BO31686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mamo-RC | 363..2759 | 17..2415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:06 Download gff for
BO31686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mamo-RC | 1466..3862 | 17..2415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:08:34 Download gff for
BO31686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mamo-RC | 1973..4369 | 17..2415 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:08:34 Download gff for
BO31686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13883066..13883364 | 2117..2415 | 99 | <- | Minus |
| X | 13883459..13885225 | 350..2116 | 100 | <- | Minus |
| X | 13885309..13885500 | 158..349 | 100 | <- | Minus |
| X | 13901483..13901623 | 17..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:06 Download gff for
BO31686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13777099..13777397 | 2117..2415 | 99 | <- | Minus |
| arm_X | 13777492..13779258 | 350..2116 | 100 | <- | Minus |
| arm_X | 13779342..13779533 | 158..349 | 100 | <- | Minus |
| arm_X | 13795516..13795656 | 17..157 | 100 | | Minus |
BO31686.pep Sequence
Translation from 16 to 2431
> BO31686.pep
MGSEHYCLRWNNYQSNLLGVFSQLLQDGSLVDVTLVCSEGTSIRAHKVVL
SACSSYFQSLFLEHPEGHLIVILKDVRFAELQTLVEFMYKGEVNVQYCQL
SALLKTAESLKVKGLAEMTNQNTTLREPEREPDRLRPQGGGGSGGSAHKA
ADSPAAALDATAATQAATATATATAAAATSTSTSATSAAATAAATAATSA
STTATAAAGSSNTTTTTAATTTATCATAATSTAATSSSSSVTSAAAAAAA
AASASGVAHSEEATSSSSSTGGQKREASDRSSPTPAKRSSRMHPADKVDV
AEDREQEQNQADELLSEELLGRNLKDEEDDDVDELDENEETKLRGRDEDD
DDEDEEEDTPMPLDLYQRPNVEPKSAAAATAAQQGGSNSLSGSSNACHTN
SSSNSNNNNNNNNNSSSNNNNNTSSGKTSASSNGGTASSGGTADSVVAVD
DDDDDDDGGHHHQRQVMDDRLEQDVDEEDLDDDVVVVGPATAMARGIAQR
LAHQNLQRLHHTHHHAQHQHSQHHHPHSQHHHTPHHQQHHTHSDDEDAMP
VIAKSEILDDDYDDEMDLEDDDEADNSSNDLGLNMKMGSGGAGGGGGVDL
STGSTLIPSPLITLPSSSAAAAAAAAAAMESQRSTPAMSAAQAAGAGASD
LSIGGCGGRPASRSSRDGGGNDGGRGGASSSSLLSPGTVANLLPVQSVPL
SLKKEIDCSEDDNSSHSRHMQQRSASAGGGLGGDLDYRASHESVSLRFGD
NFDPGPSPDPAPEFPPLKIRFETNPCQNSKRNSSPRRCLSVNAFAASIGA
SFLDH
BO31686.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mamo-PC | 799 | CG45477-PC | 1..799 | 1..799 | 4086 | 100 | Plus |
| mamo-PH | 1553 | CG45477-PH | 1..786 | 1..791 | 3793 | 95.3 | Plus |
| mamo-PI | 1553 | CG45477-PI | 1..786 | 1..791 | 3793 | 95.3 | Plus |
| mamo-PG | 1109 | CG45477-PG | 1..743 | 1..743 | 3782 | 100 | Plus |
| mamo-PF | 1109 | CG45477-PF | 1..743 | 1..743 | 3782 | 100 | Plus |
