BO31706.complete Sequence
2392 bp assembled on 2012-05-15
GenBank Submission: KX798697
> BO31706.complete
GAAGTTATCAGTCGACATGACGCGCTACAAGCAGACCGAATTCACGGAGG
ACGACTCGAGTTCCATCGGCGGCATTCAATTGAACGAAGCGACCGGCCAT
ACGGGCATGCAGATACGCTACCACACCGCCCGGGCTACATGGAATTGGCG
CTCGAGAAACAAGACGGAGAAATGGCTGCTCATCACGACTTTTGTGATGG
CCATCACGATCTTTACGCTGCTCATCGTCCTTTTCACAGATGGAGGCAGC
AGCGATGCGACCAAGCACGTCCTTCACGTCCAGCCGCACCAAAAAGATTG
TCCTTCCGGCAATGAGCTTCCTTGCTTGAACAAGCACTGCATCTTCGCCT
CGAGCGAGATCCTTAAATCGATCGATGTGACCGTGGATCCGTGCGATGAC
TTCTATGGATATTCCTGCAATCAATGGATCAAGAACAACCCCATTCCCGA
GGGGAAATCCACGTGGGGTACGTTCGGCAAGCTGGAGCAGATGAACCAGT
TGATAATACGTAACGTACTGGAGAAGCCGGCAAAAAGCTTTAAGTCGGAC
GCGGAGCGGAAGGCTAAGGTTTACTATGAATCATGCCTGGATGCGGATGA
GCACATGGAGAAGTTGGGGGCAAAGCCCATGAACGATCTACTGCTGCAGA
TCGGAGGATGGAACGTGACCAAGAGCGGCTACAACGTGGCCAACTGGACG
ATGGGACACACTCTAAAGATTCTTCATAACAAGTACAACTTCAACTGCCT
GTTTGGCTGGGCGATCGGTGAGGATGACAAGAACTCCTCGCGTCACGTCA
TCCAGATCGATCAGGGCGGTCTGACGCTGCCCACCGCCGACTACTACAAC
AACAAGACGGACAATCACCGCAAGGTGCTCAACGAGTACATTGAGTACAT
GACCAAGGTGTGCGTCCTGCTCGGGGCCAACGAATCGGATGCCCGCGCTC
AGATGATCGGCGTCATTAATTTCGAGAAGAAGCTGGCCAATATCACCATT
CCGCTGGAGGATCGCCGCAACGAGGAGGCCATGTATCATCCGATGCAGCT
GCGACAGCTGTCCAAACTGGCGCCGTTCCTCAACTGGACGGATCACTTTG
ACAATGCTATGCAGATGGTGGGTCGCCGGGTCACCGACGACGAGGTGGTT
GTCGTCTACGCACCCGACTTCCTAAAGAACCTATCGGACATCATTCTCAA
GATGGAACAGACCGAGGAGGGAAAAATCACCTTGAACAATTATCTCGTCT
GGCAGGCGGTACGCACGCTGACCAGTTGCTTGTCCAAACCATTCCGGGAT
GCCTATAAGGGCGTGAGGAAGGCCCTCATGGGATCGGATGGCGGCGAGGA
GATCTGGCGATACTGCGTCTCGGACACAAACAATGTGGTTGGTTTCGCCG
TGGGTGCTATCTTTGTGCGTCAGGCATTTCATGGAGAGTCGAAGCCGGCG
GCCGAGCAGATGATCGCCGAGATCCGCGAGGCCTTCAAGATGAATCTACA
GAATTTGACCTGGGTGGACAAGCAGACGCGCGAGAAGGCCATCGAGAAGG
CCAACCAGATTTCGGACATGATCGGATTCCCCGACTATATTCTAGATCCT
GTAGAACTGGACAAGAAGTACGCGGAGTTGAACATTACACCGAATGCCTA
CTTTGAGAACAACATCCAGGTGGCCATCTACAATCTGAAGAGCAACCTGA
AGCGTCTCGACCAACCGGTGAATAAGACCAACTGGGGCATGACTCCGCAG
ACGGTCAACGCCTACTACACGCCCACCAAGAACCAAATCGTCTTTCCCGC
GGGCATTCTGCAGACGCCCTTTTTCGACATAAACAACCCAAAGAGCCTTA
ATTTCGGGGCCATGGGCGTGGTCATGGGCCACGAACTGACCCATGCCTTC
GATGATCAGGGGCGTGAGTACGATAAGTTTGGCAACATCAATCGCTGGTG
GGACTCCAAGAGCATCGAGCGGTTTAACGAAAAGTCCGAATGCATTGCCA
GGCAGTACAGTGGATACAAGATGAACGGACGCACACTCAACGGCAAGCAG
ACGTTGGGCGAAAATATAGCCGACAATGGCGGCTTAAAGGCGGCCTACCA
CGCCTACCAGCGAACCAAGAGCGACCGTGATGTGGATATCTTGAAGCTAC
CGGGCCTGAATCTCACGCACTCGCAGCTCTTCTTTGTGTCCTTCGCCCAG
GTCTGGTGCTCCAGCACAACGGATGAAACGAACCTGCTGCAGATGGAGAA
GGATCCGCACTCGCCGTCGCAGTTTCGGGTGATCGGCACATTGTCGAACA
TGAAGGAGTTCGCCGAGGTCTTCCAGTGCAAGCCCGGCAAACGGATGAAT
CCCACTGAGAAGTGCGAGGTGTGGGCAAGCTTTCTAGACCAT
BO31706.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nep3-RC | 2361 | CG9565-PC | 1..2358 | 17..2374 | 11790 | 100 | Plus |
| Nep3-RB | 2361 | CG9565-PB | 1..2358 | 17..2374 | 11790 | 100 | Plus |
| Nep3-RA | 2361 | CG9565-PA | 1..2358 | 17..2374 | 11790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nep3-RC | 4528 | CG9565-RC | 305..2662 | 17..2374 | 11790 | 100 | Plus |
| Nep3-RB | 3546 | CG9565-RB | 167..2524 | 17..2374 | 11790 | 100 | Plus |
| Nep3-RA | 3537 | CG9565-RA | 158..2515 | 17..2374 | 11790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19966183..19967013 | 1228..2058 | 4155 | 100 | Plus |
| X | 23542271 | X | 19965577..19966071 | 733..1227 | 2475 | 100 | Plus |
| X | 23542271 | X | 19965196..19965513 | 417..734 | 1590 | 100 | Plus |
| X | 23542271 | X | 19967282..19967457 | 2199..2374 | 880 | 100 | Plus |
| X | 23542271 | X | 19964781..19964944 | 133..296 | 820 | 100 | Plus |
| X | 23542271 | X | 19967080..19967225 | 2057..2202 | 730 | 100 | Plus |
| X | 23542271 | X | 19965004..19965126 | 295..417 | 615 | 100 | Plus |
| X | 23542271 | X | 19963955..19964072 | 17..134 | 590 | 100 | Plus |
| 3R | 32079331 | 3R | 20653885..20654036 | 1905..1754 | 205 | 75.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:59:36 has no hits.
BO31706.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:00 Download gff for
BO31706.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep3-RA | 158..2515 | 17..2376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:46 Download gff for
BO31706.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep3-RA | 158..2515 | 17..2376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:18:47 Download gff for
BO31706.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep3-RA | 158..2515 | 17..2376 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:18:47 Download gff for
BO31706.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19963955..19964071 | 17..133 | 100 | -> | Plus |
| X | 19964782..19964944 | 134..296 | 100 | -> | Plus |
| X | 19965006..19965126 | 297..417 | 100 | -> | Plus |
| X | 19965197..19965511 | 418..732 | 100 | -> | Plus |
| X | 19965577..19966071 | 733..1227 | 100 | -> | Plus |
| X | 19966183..19967012 | 1228..2057 | 100 | -> | Plus |
| X | 19967081..19967223 | 2058..2200 | 100 | -> | Plus |
| X | 19967284..19967457 | 2201..2376 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:46 Download gff for
BO31706.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19857988..19858104 | 17..133 | 100 | -> | Plus |
| arm_X | 19858815..19858977 | 134..296 | 100 | -> | Plus |
| arm_X | 19859039..19859159 | 297..417 | 100 | -> | Plus |
| arm_X | 19859230..19859544 | 418..732 | 100 | -> | Plus |
| arm_X | 19859610..19860104 | 733..1227 | 100 | -> | Plus |
| arm_X | 19860216..19861045 | 1228..2057 | 100 | -> | Plus |
| arm_X | 19861114..19861256 | 2058..2200 | 100 | -> | Plus |
| arm_X | 19861317..19861490 | 2201..2376 | 98 | | Plus |
BO31706.pep Sequence
Translation from 16 to 2392
> BO31706.pep
MTRYKQTEFTEDDSSSIGGIQLNEATGHTGMQIRYHTARATWNWRSRNKT
EKWLLITTFVMAITIFTLLIVLFTDGGSSDATKHVLHVQPHQKDCPSGNE
LPCLNKHCIFASSEILKSIDVTVDPCDDFYGYSCNQWIKNNPIPEGKSTW
GTFGKLEQMNQLIIRNVLEKPAKSFKSDAERKAKVYYESCLDADEHMEKL
GAKPMNDLLLQIGGWNVTKSGYNVANWTMGHTLKILHNKYNFNCLFGWAI
GEDDKNSSRHVIQIDQGGLTLPTADYYNNKTDNHRKVLNEYIEYMTKVCV
LLGANESDARAQMIGVINFEKKLANITIPLEDRRNEEAMYHPMQLRQLSK
LAPFLNWTDHFDNAMQMVGRRVTDDEVVVVYAPDFLKNLSDIILKMEQTE
EGKITLNNYLVWQAVRTLTSCLSKPFRDAYKGVRKALMGSDGGEEIWRYC
VSDTNNVVGFAVGAIFVRQAFHGESKPAAEQMIAEIREAFKMNLQNLTWV
DKQTREKAIEKANQISDMIGFPDYILDPVELDKKYAELNITPNAYFENNI
QVAIYNLKSNLKRLDQPVNKTNWGMTPQTVNAYYTPTKNQIVFPAGILQT
PFFDINNPKSLNFGAMGVVMGHELTHAFDDQGREYDKFGNINRWWDSKSI
ERFNEKSECIARQYSGYKMNGRTLNGKQTLGENIADNGGLKAAYHAYQRT
KSDRDVDILKLPGLNLTHSQLFFVSFAQVWCSSTTDETNLLQMEKDPHSP
SQFRVIGTLSNMKEFAEVFQCKPGKRMNPTEKCEVWASFLDH
BO31706.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nep3-PC | 786 | CG9565-PC | 1..786 | 1..786 | 4206 | 100 | Plus |
| Nep3-PB | 786 | CG9565-PB | 1..786 | 1..786 | 4206 | 100 | Plus |
| Nep3-PA | 786 | CG9565-PA | 1..786 | 1..786 | 4206 | 100 | Plus |
| Nep1-PD | 849 | CG5905-PD | 73..849 | 12..786 | 1347 | 35.9 | Plus |
| Nep1-PC | 849 | CG5905-PC | 73..849 | 12..786 | 1347 | 35.9 | Plus |
