Clone BO31711 Report

Search the DGRC for BO31711

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:317
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG6753-RB
Protein status:BO31711.pep: Imported from assembly
Sequenced Size:1249

Clone Sequence Records

BO31711.complete Sequence

1249 bp assembled on 2012-04-25

GenBank Submission: KX799693

> BO31711.complete
GAAGTTATCAGTCGACATGCGACGGGAGCGAGTGGTGCTGCTGTGCCTGG
CGCTGCTCGGATTGCAGCAGGTGTCCAGGGCCACTCTGCGTCAGTCGCGC
GAAATCATCATCACAGATGCGGTGCGGCGCATCCAGAACGACGGCTACAA
CGTGGAGCGCCACTCGGTGACGACGAAGGACGGATATGTGCTCACCCTGC
ACCGCATCCCGCAGGTGGATCCCGAACTGGGCAGTCTGCTGAGACGCCCT
GTCGTCTTCCTGCTCTCCGGACTCTATGCCTCATCGGATGTGTGGCTGCT
GAACGGGCGGGAGGACTCCTTAGCCTACCTCCTTTGGCGAGCAGGATACG
ATGTGTGGCTGGGAAACAACAGAGGCAACATCTACTGCCGGAAGAACATG
TGGCGGAACACCACAGAACGGGAGTTCTGGGACTTCAGCTGGCACGAGAT
GGGCGTCTACGATTTGCCAGCCCAGGTGGATTACGTGCTCCGGACAACCG
GACAGAAGGCTATGCACTTTGTGGGGATCTCGCAGGGCGGCACCGTCTTC
CTGGTCCTCAATTCGATGATGCCACAGTATAATGCCGTTTTCAAGAGCGC
CACCCTGCTGGCCCCGGTGGCCTATGTGAGCAATACAAAGAGTGGGCTGG
CCAAGGTCATTGGTCCAGTGCTTGGCACACGGAACTATGTCTCTAAGATG
CTTGAGGGCGTCGAGATGTTCTCCACGAACAAGTTCTTCAAGAAGTTCCT
ATCGATGACGTGTCTGGAGAACGAAAAGCCACTGGTCTGCATCAGTCGCC
TGTGGCCAGCCGTTGGCTATGACACCCGATTCCTTAACAAGACGTTATTG
CCCGACCTGATGGCCAACTTTCCGGCGGGCGGATCGGTGAAGCAGCTGAT
GCACTACTTCCAGGGCTATGTGTCCACCAGATTCCGGCAGTATGACTACG
GTCCCGAGCGGAACTGGCTGCACTATCAGCAACTGGAGCCACCGGAGTAC
GCGCTGGAGAACGTGTCCACGCCAGTTACGGTCTTCTTCTCGGAAAACGA
CTACATTGTGGCGCCGGCGGACATCTGGCGATTGCTCACCCGGTTGCCCA
ACGTGGAAGCCGTGTACAAGGTTCCCTGGAAGCGATGGAACCACTTTGAC
TTCATCTGCGGATTGGGGGTCAGGGAGTACATATTCGACAACATTGTGCT
TTCCATGAACCGCTACGAGCAGCGGCGACGCGCAAGCTTTCTAGACCAT

BO31711.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6753-RB 1218 CG6753-PB 1..1215 17..1231 6075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6753-RB 1774 CG6753-RB 378..1593 16..1231 6080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12640344..12641283 1231..292 4700 100 Minus
3R 32079331 3R 12641538..12641711 294..121 870 100 Minus
3R 32079331 3R 12641998..12642105 123..16 540 100 Minus
Blast to na_te.dros performed 2014-11-28 05:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2852..2912 363..424 127 69.4 Plus

BO31711.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:04 Download gff for BO31711.complete
Subject Subject Range Query Range Percent Splice Strand
CG6753-RB 470..1684 17..1233 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:58 Download gff for BO31711.complete
Subject Subject Range Query Range Percent Splice Strand
CG6753-RB 379..1593 17..1233 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:14:47 Download gff for BO31711.complete
Subject Subject Range Query Range Percent Splice Strand
CG6753-RB 379..1593 17..1233 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:14:47 Download gff for BO31711.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12640341..12641283 292..1233 99 <- Minus
3R 12641541..12641710 122..291 100 <- Minus
3R 12642000..12642104 17..121 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:58 Download gff for BO31711.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8466063..8467005 292..1233 99 <- Minus
arm_3R 8467263..8467432 122..291 100 <- Minus
arm_3R 8467722..8467826 17..121 100   Minus

BO31711.pep Sequence

Translation from 16 to 1249

> BO31711.pep
MRRERVVLLCLALLGLQQVSRATLRQSREIIITDAVRRIQNDGYNVERHS
VTTKDGYVLTLHRIPQVDPELGSLLRRPVVFLLSGLYASSDVWLLNGRED
SLAYLLWRAGYDVWLGNNRGNIYCRKNMWRNTTEREFWDFSWHEMGVYDL
PAQVDYVLRTTGQKAMHFVGISQGGTVFLVLNSMMPQYNAVFKSATLLAP
VAYVSNTKSGLAKVIGPVLGTRNYVSKMLEGVEMFSTNKFFKKFLSMTCL
ENEKPLVCISRLWPAVGYDTRFLNKTLLPDLMANFPAGGSVKQLMHYFQG
YVSTRFRQYDYGPERNWLHYQQLEPPEYALENVSTPVTVFFSENDYIVAP
ADIWRLLTRLPNVEAVYKVPWKRWNHFDFICGLGVREYIFDNIVLSMNRY
EQRRRASFLDH

BO31711.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6753-PB 405 CG6753-PB 1..405 1..405 2154 100 Plus
Lip3-PA 394 CG8823-PA 25..394 32..401 819 43.3 Plus
CG8093-PB 398 CG8093-PB 3..396 6..398 793 40.7 Plus
CG8093-PA 398 CG8093-PA 3..396 6..398 793 40.7 Plus
CG3635-PB 425 CG3635-PB 25..420 3..402 766 41.4 Plus