BO31717.complete Sequence
580 bp assembled on 2012-04-25
GenBank Submission: KX795396
> BO31717.complete
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGTCCATGCACTGGGTAACACCCAAGACCA
AGGATCGCATGCTGCCCGAGACCGGTGGAGCAGCTGCCCAGGGACCTGGA
ACCGGTGCAGGATGCAGCAGCGGTGGCCTGACCGCAGCATCCCCCAATCC
CGCCCACCGGCGGGCCTCGGAGGGCGGGGCGGCCTTGTACTACGGGAGTC
GCAAGGGCGAGTGGGGCGGCGAGAACACCGATGTGGCCAACAAGTTCCGC
AACTACGAGATCGCAAGCTTTCTAGACCAT
BO31717.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jdp-RB | 549 | CG2239-PB | 1..546 | 17..562 | 2730 | 100 | Plus |
| jdp-RC | 513 | CG2239-PC | 1..306 | 17..322 | 1530 | 100 | Plus |
| jdp-RA | 588 | CG2239-PA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jdp-RB | 1921 | CG2239-RB | 101..646 | 17..562 | 2730 | 100 | Plus |
| jdp-RC | 663 | CG2239-RC | 101..406 | 17..322 | 1530 | 100 | Plus |
| jdp-RA | 1960 | CG2239-RA | 101..406 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:40:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30518334..30518575 | 562..321 | 1210 | 100 | Minus |
| 3R | 32079331 | 3R | 30519647..30519765 | 322..204 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 30523227..30523330 | 206..103 | 520 | 100 | Minus |
| 3R | 32079331 | 3R | 30526243..30526329 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:40:51 has no hits.
BO31717.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:08 Download gff for
BO31717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jdp-RB | 103..648 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:23 Download gff for
BO31717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jdp-RB | 101..646 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:08 Download gff for
BO31717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jdp-RB | 101..646 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:08 Download gff for
BO31717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30526243..30526329 | 17..103 | 100 | | Minus |
| 3R | 30518332..30518573 | 323..564 | 99 | <- | Minus |
| 3R | 30519647..30519763 | 206..322 | 100 | <- | Minus |
| 3R | 30523228..30523329 | 104..205 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:23 Download gff for
BO31717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26344054..26344295 | 323..564 | 99 | <- | Minus |
| arm_3R | 26345369..26345485 | 206..322 | 100 | <- | Minus |
| arm_3R | 26348950..26349051 | 104..205 | 100 | <- | Minus |
| arm_3R | 26351965..26352051 | 17..103 | 100 | | Minus |
BO31717.pep Sequence
Translation from 16 to 580
> BO31717.pep
MSAVDAIINYKRSPNEDFYGLLHCDENSSPEQIQAEYKVLALQYHPDKNS
GDKEAEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHV
GQSMHWVTPKTKDRMLPETGGAAAQGPGTGAGCSSGGLTAASPNPAHRRA
SEGGAALYYGSRKGEWGGENTDVANKFRNYEIASFLDH
BO31717.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jdp-PB | 182 | CG2239-PB | 1..182 | 1..182 | 983 | 100 | Plus |
| jdp-PA | 195 | CG2239-PA | 1..195 | 1..182 | 959 | 93.3 | Plus |
| jdp-PC | 170 | CG2239-PC | 1..120 | 1..120 | 553 | 86.7 | Plus |
| DnaJ-1-PA | 334 | CG10578-PA | 3..72 | 16..86 | 152 | 40.8 | Plus |
| DnaJ-1-PB | 334 | CG10578-PB | 3..72 | 16..86 | 152 | 40.8 | Plus |
