BO31731.complete Sequence
3790 bp assembled on 2012-05-15
GenBank Submission: KX797462
> BO31731.complete
GAAGTTATCAGTCGACATGCGCAATCTGAAGCTGCGATATTGCAAGGAGC
TGAATGCAGTGGCTCATCCCCAGCATCTACTTCTTCAACCTGAACTAAAT
GGCGGCGCCTCGGACATATACTTCGTGGTGGCTGATAACAAGATCTACGC
GGTTCAGGAGTCCGGAGATGTACGACTAAAAGTCATTGCCGATTTGCCGG
ACATAGTGGGAGTGGAGTTCTTACAGCTGGACAATGCGATCTGCGTGGCC
AGTGGTGCTGGTGAAGTGATCCTGGTCGACCCCCAAACAGGAGCTACCAG
CGAGGGAACGTTCTGTGACGTGGGCATAGAGAGCATGGCATGGTCGCCTA
ATCAGGAAGTGGTGGCCTTCGTTACCCGCACTCACAACGTGGTGTTGATG
ACCAGCACATTCGACGTTATAGCGGAGCAGCCACTGGACGCGGAACTAGA
CCCAGATCAGCAGTTTGTCAATGTGGGATGGGGCAAGAAGGAGACGCAGT
TCCACGGATCGGAGGGAAAGCAGGCTGCGAAGCAGAAAGAATCCGATTCT
ACATTCATCCGCGATGAACAGGAATTAAATCAGGATGTAAGCATTTCCTG
GCGAGGCGATGGTGAATTTTTTGTTGTGTCTTATGTGGCAGCCCAATTGG
GTCGCACCTTTAAGGTGTACGATAGCGAGGGAAAACTGAATCACACAGCC
GAAAAGAGTGCAAATCTAAAAGATTCTGTTGTCTGGCGGCCTACGGGTAA
TTGGATTGCCGTACCCCAGCAGTTTCCCAACAAGTCTACCATAGCCCTCT
TTGAGAAAAATGGCTTGCGACATCGGGAGCTGGTCCTTCCCTTCGATCTC
CAGGAGGAGCCGGTGGTGCAGCTGCGCTGGAGCGAGGACTCCGACATACT
GGCCATTAGGACATGTGCCAAAGAAGAGCAGAGAGTGTACCTGTATACAA
TAGGTAACTACCACTGGTATTTGAAGCAGGTGTTGATTTTTGAACAAGCG
GATCCTCTGGCACTGCTCCATTGGGACACGCGGTGTGGAGCCGAACACAC
ACTTCACGTTCTTAAGGAAAGTGGCAAGCATCTGGTCTACCGCTGGGCAT
TTGCCGTAGATCGAAATAATTCTATCGTGGGAGTCATTGATGGTAAACGC
CTGTTGCTCACAGATTTCGACGAGGCCATAGTACCACCACCCATGAGTAA
GATCGTCCTTAAATTCGAAACGTATATCAATGCCTTCATCAGCCATGGTA
CCAGCTTGTGGGTATATACTTGCGATCGTAAAATATACCTAAATGAACAC
ATACATACGTTAGGCAAAGAGCTACAAAAGCCCATTATGCTTATGCCCGA
TGCCGAGCTCTCTGGCTTGCATCTGGCCAATCTCACCCATTTCTCGCCCC
ACTATCTGCTGGCCACTCACAGTTCAGCAGGATCCACACGCCTGCTACTG
TTGTCATATAAGGATAATGACAACAAGCCAGGCGAGTGGTTCTATCGAGT
GCACAGTTCCGTGCGGATCAACGGATTGGTGAATGCTGTTGCCGTCGCAC
CTTATGCCATGAATGAGTTTTACGTGCAAACAGTGAATAATGGTCACACA
TACGAGGTGTCGCTTAAAGCGGACAAGACACTTAAGGTGGAGCGATCTTA
TGTGCAGCTGCATGAGCCGGCTGACCAGATAGATTGGGTTATCGTCAAAG
GATGTATTTGGGATGGTTACACAGGTGCTCTCGTCACCCTTCGCAATCAG
CATCTACTACATATCGATGGTTATCGCATTGGCGAGGACGTCACTTCCTT
CTGCGTAGTTACTAATTATCTTGTATACACCCAGCTAAATGCGATGCACT
TTGTTCAACTGGATGATCGCCGCCAGGTGGCAAGCAGGAACATTGAACGC
GGTGCGAAGATAGTAACGGCAGTGGCCCGGAAAGCACGCGTCGTGCTGCA
GTTGCCACGCGGAAACCTGGAGGCCATTTGCCCTCGTGTGCTTGTCCTCG
AGTTGGTCGGTGATCTTCTGGAACGTGGGAAATACCAGAAGGCAATTGAG
ATGTCGCGCAAGCAACGTATCAACCTGAACATCATTTTCGATCACGATGT
GAAGCGGTTCGTGTCCTCAGTGGGCGCCTTTCTGAACGATATCAATGAAC
CTCAGTGGCTCTGCCTGTTCCTCAGTGAGTTACAGAACGAGGACTTTACC
AAAGGAATGTACTCCAGTAATTATGATGCGTCCAAACAGACCTATCCCTC
GGATTATAGGGTCGATCAGAAGGTGGAATACGTGTGTCGGCTGCTGGAAC
AACAAATGAATAGGTTTGTTAGCCGTTTTCGTTTGCCTTTGATCACCGCC
TATGTAAAATTAGGCTGTTTGGAAATGGCTCTCCAGGTGATTTGGAAGGA
GCAGCAAGAAGATGCGTCCCTTGCTGACCAGCTACTGCAACATCTTCTTT
ATTTGGTGGACGTTAACGACCTGTACAACGTGGCCCTTGGCACCTACGAT
TTCGGGCTCGTCTTGTTTGTGGCTCAAAAGTCACAAAAGGATCCTAAGGA
GTTTCTTCCCTATCTCAACGATTTGAAGGCATTGCCTATAGACTATCGCA
AGTTCCGGATCGATGATCATCTTAAAAGATATACTTCTGCACTTTCACAT
CTTGCTGCCTGCGGAGAGCAGCATTACGAGGAAGCTCTGGAGTATATCCG
TAAGCATGGCCTGTACACTGATGGCTTGGCATTCTATCGGGAGCACATTG
AGTTCCAGAAAAACATCTACGTGGCCTACGCTGATCATCTTAGAGCCATT
GCCAAACTGGACAACGCCAGTCTCATGTACGAACGTGGCGGACAGTTGCA
GCAGGCGCTACTTAGTGCGAAACACACTCTCGATTGGCAACGTGTTTTGG
TGCTGGCCAAAAAGCTGAGTGAACCTCTGGATCAGGTGGCCCAGTCGCTG
GTGGGGCCGTTGCAACAGCAGGGTCGCCACATGGAAGCGTATGAGTTGGT
AAAGGAGCACTGTCAGGATCGAAAGCGGCAGTTCGATGTGTTGCTTGAGG
GCCATCTGTACAGCAGAGCCATTTACGAGGCGGGTCTGGAGGATGATGAT
GTCTCAGAAAAAATAGCGCCCGCTTTGTTAGCATATGGTGTTCAACTAGA
AAGCTCCCTGCAAGCTGATCTGCAACTCTTCCTCGATTACAAGCAGCGGC
TTTTGGACATCCGCCGGAATCAAGCAAAATCCGGTGAGGGGTATATTGAT
ACGGATGTGAATCTGAAAGAGGTGGACCTACTGTCGGACACCACCAGTCT
CCACTCCTCGCAATACAGTGGCACATCACGAAGGACTGGCAAGACATTCC
GCTCAAGCAAAAACCGACGCAAGCACGAACGCAAGCTGTTCAGCCTGAAG
CCGGGCAACCCCTTCGAAGACATCGCGCTCATCGATGCGCTGCACAACCA
CGTCACGAAGATAGCCCAACAGCAGCAGCCTGTGCGTGACACATGCAAAG
CGCTCCTACAGCTCGCCAATGCCGCGGATGCAGATCCCCTGGCAGCCGCA
CTGCAGCGTGAATTCAAGACACTGTTGCAAGCGGTGGATGCGGCGCTGGA
CGAGATCTGGACACCTGAGCTACGGGGGAACGGATTGATGGCGGATCACC
TTACGGGACCCAATGTGGATTACCTTGCACTGCAGAAGGAGCAGCGCTAT
GCCTTGCTAAGTCCCCTGAAGCGCTTCAAGCCGCAGCTGATTATGATGGA
CTGGCAACACGAGATCCTCCAGGCAAGCTTTCTAGACCAT
BO31731.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Elp1-RA | 3759 | CG10535-PA | 1..3756 | 17..3772 | 18765 | 100 | Plus |
Elp1-RB | 3762 | CG10535-PB | 1..3759 | 17..3772 | 18700 | 99.9 | Plus |
Elp1-RC | 3771 | CG10535-PC | 1..3768 | 17..3772 | 18610 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Elp1-RA | 3918 | CG10535-RA | 38..3793 | 17..3772 | 18765 | 100 | Plus |
Elp1-RB | 3921 | CG10535-RB | 38..3796 | 17..3772 | 18700 | 99.9 | Plus |
Elp1-RC | 4312 | CG10535-RC | 38..3805 | 17..3772 | 18610 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11652854..11654238 | 1723..3107 | 6910 | 99.9 | Plus |
3R | 32079331 | 3R | 11651633..11652778 | 581..1726 | 5730 | 100 | Plus |
3R | 32079331 | 3R | 11651008..11651575 | 17..584 | 2840 | 100 | Plus |
3R | 32079331 | 3R | 11654594..11654967 | 3339..3712 | 1870 | 100 | Plus |
3R | 32079331 | 3R | 11654292..11654526 | 3105..3339 | 1175 | 100 | Plus |
3R | 32079331 | 3R | 11655123..11655184 | 3711..3772 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:01:29 has no hits.
BO31731.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:05 Download gff for
BO31731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elp1-RA | 21..3776 | 17..3774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:12 Download gff for
BO31731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elp1-RA | 38..3793 | 17..3774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:19:32 Download gff for
BO31731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elp1-RA | 38..3793 | 17..3774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:19:32 Download gff for
BO31731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11651008..11651574 | 17..583 | 100 | -> | Plus |
3R | 11651636..11652776 | 584..1724 | 100 | -> | Plus |
3R | 11652856..11654238 | 1725..3107 | 99 | -> | Plus |
3R | 11654295..11654526 | 3108..3339 | 100 | -> | Plus |
3R | 11654595..11654965 | 3340..3710 | 100 | -> | Plus |
3R | 11655123..11655184 | 3711..3774 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:12 Download gff for
BO31731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7476730..7477296 | 17..583 | 100 | -> | Plus |
arm_3R | 7477358..7478498 | 584..1724 | 100 | -> | Plus |
arm_3R | 7478578..7479960 | 1725..3107 | 99 | -> | Plus |
arm_3R | 7480017..7480248 | 3108..3339 | 100 | -> | Plus |
arm_3R | 7480317..7480687 | 3340..3710 | 100 | -> | Plus |
arm_3R | 7480845..7480906 | 3711..3774 | 96 | | Plus |
BO31731.pep Sequence
Translation from 16 to 3790
> BO31731.pep
MRNLKLRYCKELNAVAHPQHLLLQPELNGGASDIYFVVADNKIYAVQESG
DVRLKVIADLPDIVGVEFLQLDNAICVASGAGEVILVDPQTGATSEGTFC
DVGIESMAWSPNQEVVAFVTRTHNVVLMTSTFDVIAEQPLDAELDPDQQF
VNVGWGKKETQFHGSEGKQAAKQKESDSTFIRDEQELNQDVSISWRGDGE
FFVVSYVAAQLGRTFKVYDSEGKLNHTAEKSANLKDSVVWRPTGNWIAVP
QQFPNKSTIALFEKNGLRHRELVLPFDLQEEPVVQLRWSEDSDILAIRTC
AKEEQRVYLYTIGNYHWYLKQVLIFEQADPLALLHWDTRCGAEHTLHVLK
ESGKHLVYRWAFAVDRNNSIVGVIDGKRLLLTDFDEAIVPPPMSKIVLKF
ETYINAFISHGTSLWVYTCDRKIYLNEHIHTLGKELQKPIMLMPDAELSG
LHLANLTHFSPHYLLATHSSAGSTRLLLLSYKDNDNKPGEWFYRVHSSVR
INGLVNAVAVAPYAMNEFYVQTVNNGHTYEVSLKADKTLKVERSYVQLHE
PADQIDWVIVKGCIWDGYTGALVTLRNQHLLHIDGYRIGEDVTSFCVVTN
YLVYTQLNAMHFVQLDDRRQVASRNIERGAKIVTAVARKARVVLQLPRGN
LEAICPRVLVLELVGDLLERGKYQKAIEMSRKQRINLNIIFDHDVKRFVS
SVGAFLNDINEPQWLCLFLSELQNEDFTKGMYSSNYDASKQTYPSDYRVD
QKVEYVCRLLEQQMNRFVSRFRLPLITAYVKLGCLEMALQVIWKEQQEDA
SLADQLLQHLLYLVDVNDLYNVALGTYDFGLVLFVAQKSQKDPKEFLPYL
NDLKALPIDYRKFRIDDHLKRYTSALSHLAACGEQHYEEALEYIRKHGLY
TDGLAFYREHIEFQKNIYVAYADHLRAIAKLDNASLMYERGGQLQQALLS
AKHTLDWQRVLVLAKKLSEPLDQVAQSLVGPLQQQGRHMEAYELVKEHCQ
DRKRQFDVLLEGHLYSRAIYEAGLEDDDVSEKIAPALLAYGVQLESSLQA
DLQLFLDYKQRLLDIRRNQAKSGEGYIDTDVNLKEVDLLSDTTSLHSSQY
SGTSRRTGKTFRSSKNRRKHERKLFSLKPGNPFEDIALIDALHNHVTKIA
QQQQPVRDTCKALLQLANAADADPLAAALQREFKTLLQAVDAALDEIWTP
ELRGNGLMADHLTGPNVDYLALQKEQRYALLSPLKRFKPQLIMMDWQHEI
LQASFLDH
BO31731.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:30:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Elp1-PA | 1252 | CG10535-PA | 1..1252 | 1..1252 | 6507 | 100 | Plus |
Elp1-PB | 1253 | CG10535-PB | 1..1253 | 1..1252 | 6495 | 99.9 | Plus |
Elp1-PC | 1256 | CG10535-PC | 1..1256 | 1..1252 | 6492 | 99.7 | Plus |