BO31739.complete Sequence
2962 bp assembled on 2013-01-22
GenBank Submission: KX799646
> BO31739.complete
GAAGTTATCAGTCGACATGTATCCGTATTACGAGCAGGACTGGAGCGTTC
TGCCGCCGGAGAACAATCGCAGATTTAATCCAGCCTTCAATATGGCCACC
ATACGGCAAGCATTCACAGAGGCGGTGGAGAGAGTCAGAATGCCTACGCC
CACACGCCTGCGCGACCTCATCCGACAGATTCGCGCCGCCAGAACCGCCG
CCGAGGAGCGGGCGGTGGTCAACAAAGAGTGCGCCTACATACGGAGCACG
TTCCGCGAGGAGGACTCCGTCTGGCGCTGTCGCAACATTGCCAAGCTGCT
GTACATACACATGCTCGGCTATCCGGCTCACTTTGGCCAACTGGAGTGCC
TTAAGCTGACGGCCAGCACGCGGTTCACAGACAAGCGGATCGGCTACCTG
GGCGCCATGCTGCTGCTGGATGAGCGGCAGGATGTCCACCTGCTTATCAC
CAACTGCTTGAAGAACGACTTGAACAGCTCTACGCAGTTCGTCGTGGGCC
TAGCCCTATGCACTCTGGGTGCGATCGCCTCACCGGAGATGGCCCGAGAT
CTGGCCAGCGAGGTGGAGCGTCTGATGAAGTCCCCGAACACGTACATTCG
CAAGAAGGCGACGCTGTGCGCCTTTCGCGTCATTCGCCGTGTGCCCGAGC
TAATGGAGATCTTCTTGCCGGCCACGCGTTCCCTGCTCAGCGAGAAGAAT
CATGGAATTTTGATCACTGGCGTTACGCTGATCACGGAGATGTGCGAGAA
CAGTTCGGACACGCTGATGCATTTCAAGAAGATTGTGCCGAACTTGGTGC
GCATCCTGAAGAATCTGATCCTGGGCGGCTATTCGCCGGAGCACGATGTC
AGCGGCGTGAGCGATCCGTTCCTGCAGGTGAAGATACTGCGACTGCTGCG
CATACTGGGCCACAACGATCCGGACGCCTCGGAGGCGATGAACGATATAC
TGGCCCAGGTGGCCACCAACACGGAGACGAGCAAGAATGTGGGCAATACC
ATCCTCTACGAGACCGTGCTCTCCATCATGGACATACGCTCGGAGGGTGG
ACTGCGCGTCCTGGCCGTCAATATACTGGGACGATTCCTGCTCAACTCGG
ACAAGAACATACGGTATGTGGCACTGAACACGCTGCTGCGAACGGTGCAT
GCGGACACGTCGGCGGTGCAGCGGCATCGCACCACCATTCTGGAGTGCCT
CAAGGATCCGGACGTCTCGATCCGTCGGCGGGCGATGGAGCTATCGTTTG
CGCTGATCAATGCACAAAACATACGTACAATGACCAAGGAGCTGCTGCTC
TTCCTCGAGAAGGCGGACGCCGAGTTCAAGGCGCAGTGCAGCTCGGGCAT
GATACTGGCCGCCGAGCGTTACTCCCCGACAACGCGCTGGCATCTGGATA
CGCAGCTGAGCGTGCTGATTGCAGCGGGAAACTATGTGCGCGACGACGTC
GTCTCCTCCACCATCCAGCTGGTGTCCAGCAGTCCCGTCCCGGAGCAGAC
GTACATCACGAACCGTTTCTGGGAGTCGCTGCAGGTGGCCAATCATTGCG
AGGACAAGCAGCCGCTGCTGCAGGTTGCCGTCTGGGCCATAGGCGAGTAC
GGCGATCTCTTTATGTACGGCGCCAACGAGGATGAGTTTGAACGGCCCAC
TGAGAGTGATCTGATCGCTGTGTATTATAAGTTTTTAACCTCTGCTCAAG
TCTCGACCACAAGCAAGCAATATGCTCTGGTCTCCCTAGCCAAGCTAAGC
ACACGTTTGCAACAGTGCGTGGAGGAAATTCAGGCACTGATCACGTCTTT
TGGTAGCCATCTGAATGTGGATCTGCAGCAGCGAGGCGTGGAGTTCACAC
AGCTCTTTGGCCATTACAAGCATCTGCGTCCACCGCTGCTGGAAAAGATG
CCGGCCATGCAGATCAGCAGGATTAGCTCGCAGAATGGCGAGAGCGGCGG
TGGTTCCTTCGACGACAACAGTCCCGATGTCATCGAAAATGGCGTGGAAG
GAGGCGGCGGTGGCGGACACTCACTTATCGAAAGCAATATGAACACCCTT
GGTGACAATACGAACATTTTGCTAGATCTGCTGGGCAGCACGGATCTCTC
TGCGGGAGGAGCTGGTGATTTGGTGGCAGCCACGGATCTCTCGAATGCCG
TGCATAAAAAGAACTCGCGCAATGCCAACGATGTGGTGGCGCCCGTTTCC
AATAACCAGGATCTGTTGGATCTGCTCGATCTGGATCTATCGGCGCCCTC
GTCCACGACGACGGGTGCGCCAGCGGGCGGAGGAGGAGGCGGTGGCATTG
TGGCTCTGGTGGGCGATAATAACCAGAGCAGTGCGGCAAACATGAATAAC
ATGCTCGGTGGCCTGGACTTGGGCGGCTTTGGATCTGGTCTGGACAGCTC
TGCCAGCATACCCACAAACGGCAACGATTTGGCCAGCATGCTGGGTGGCC
TGGGTGCCCCGCCGGCTGCATCACCGTCTCTGGCGGCATCAGCTCCCGTT
GGCAACCTTATCGATGGCCATGCCGGCAGTCTGCTGGCCGATCTGAATCC
CACGGCTGCCTCCAACAATGTAGTAGTGCCTCCACAGGGTCCCAGGCTGA
CGGCGCTGGACAAGGATGGGTTACTCGTGCAACTGGTTTCGGTCAGGGGC
AGCGACTGCATGCGCATCTATATGACGACCACGAATAACTCAGACAATAC
CCTGGATCAGTACTTGCTGCAGGCGGCTGTGCAAAGGAGTTTCCAGCTGC
AGATGCTGACGCCATCTGGTTCCGTGCTGCCGCCCGGCGGAGTTATAACG
CAGGAGATGCGCGTGGTGGCCACGTCGAATGCGACACTGCGGATGCGTTT
GCGCATACAGTACGTGCTCGATGGCCAGCAGCAGGTGGAACAGACGGAGG
TCAGTGGATTCCCCGAGCAGCAGCCGGCGCCGGCGGCCGCAGAGGCAAGC
TTTCTAGACCAT
BO31739.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1gamma-RB | 2931 | CG9113-PB | 1..2928 | 17..2944 | 14610 | 99.9 | Plus |
AP-1gamma-RD | 2949 | CG9113-PD | 1..2946 | 17..2944 | 14395 | 99.3 | Plus |
AP-1gamma-RI | 2892 | CG9113-PI | 17..2889 | 72..2944 | 14335 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1gamma-RB | 4648 | CG9113-RB | 240..3168 | 16..2944 | 14615 | 99.9 | Plus |
AP-1gamma-RD | 4666 | CG9113-RD | 240..3186 | 16..2944 | 14400 | 99.3 | Plus |
AP-1gamma-RI | 4887 | CG9113-RI | 533..3405 | 72..2944 | 14335 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9113974..9114570 | 1038..1634 | 2985 | 100 | Plus |
X | 23542271 | X | 9115195..9115711 | 2062..2578 | 2585 | 100 | Plus |
X | 23542271 | X | 9114838..9115126 | 1774..2062 | 1430 | 99.7 | Plus |
X | 23542271 | X | 9113641..9113899 | 780..1038 | 1295 | 100 | Plus |
X | 23542271 | X | 9111854..9112093 | 466..705 | 1185 | 99.6 | Plus |
X | 23542271 | X | 9111597..9111786 | 276..465 | 950 | 100 | Plus |
X | 23542271 | X | 9115764..9115909 | 2578..2723 | 730 | 100 | Plus |
X | 23542271 | X | 9111385..9111528 | 133..276 | 720 | 100 | Plus |
X | 23542271 | X | 9114633..9114773 | 1634..1774 | 705 | 100 | Plus |
X | 23542271 | X | 9116146..9116259 | 2831..2944 | 570 | 100 | Plus |
X | 23542271 | X | 9115968..9116079 | 2720..2831 | 560 | 100 | Plus |
X | 23542271 | X | 9112162..9112239 | 704..781 | 390 | 100 | Plus |
X | 23542271 | X | 9111078..9111143 | 69..134 | 330 | 100 | Plus |
X | 23542271 | X | 9108930..9108986 | 16..72 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:11:48 has no hits.
BO31739.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-22 18:21:55 Download gff for
BO31739.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1gamma-RB | 239..3166 | 17..2946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:56 Download gff for
BO31739.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1gamma-RB | 241..3168 | 17..2946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:04 Download gff for
BO31739.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1gamma-RB | 241..3168 | 17..2946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:04 Download gff for
BO31739.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9108931..9108986 | 17..72 | 100 | -> | Plus |
X | 9111082..9111143 | 73..134 | 100 | -> | Plus |
X | 9111387..9111528 | 135..276 | 100 | -> | Plus |
X | 9111598..9111786 | 277..465 | 100 | -> | Plus |
X | 9111854..9112092 | 466..704 | 99 | -> | Plus |
X | 9112163..9112239 | 705..781 | 100 | -> | Plus |
X | 9113643..9113899 | 782..1038 | 100 | -> | Plus |
X | 9113975..9114570 | 1039..1634 | 100 | -> | Plus |
X | 9114634..9114772 | 1635..1773 | 100 | -> | Plus |
X | 9114838..9115126 | 1774..2062 | 99 | -> | Plus |
X | 9115196..9115711 | 2063..2578 | 100 | -> | Plus |
X | 9115765..9115908 | 2579..2722 | 100 | -> | Plus |
X | 9115971..9116078 | 2723..2830 | 100 | -> | Plus |
X | 9116146..9116259 | 2831..2946 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:56 Download gff for
BO31739.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9002964..9003019 | 17..72 | 100 | -> | Plus |
arm_X | 9005115..9005176 | 73..134 | 100 | -> | Plus |
arm_X | 9005420..9005561 | 135..276 | 100 | -> | Plus |
arm_X | 9005631..9005819 | 277..465 | 100 | -> | Plus |
arm_X | 9005887..9006125 | 466..704 | 99 | -> | Plus |
arm_X | 9006196..9006272 | 705..781 | 100 | -> | Plus |
arm_X | 9007676..9007932 | 782..1038 | 100 | -> | Plus |
arm_X | 9008008..9008603 | 1039..1634 | 100 | -> | Plus |
arm_X | 9008667..9008805 | 1635..1773 | 100 | -> | Plus |
arm_X | 9008871..9009159 | 1774..2062 | 99 | -> | Plus |
arm_X | 9009229..9009744 | 2063..2578 | 100 | -> | Plus |
arm_X | 9009798..9009941 | 2579..2722 | 100 | -> | Plus |
arm_X | 9010004..9010111 | 2723..2830 | 100 | -> | Plus |
arm_X | 9010179..9010292 | 2831..2946 | 98 | | Plus |
BO31739.pep Sequence
Translation from 16 to 2962
> BO31739.pep
MYPYYEQDWSVLPPENNRRFNPAFNMATIRQAFTEAVERVRMPTPTRLRD
LIRQIRAARTAAEERAVVNKECAYIRSTFREEDSVWRCRNIAKLLYIHML
GYPAHFGQLECLKLTASTRFTDKRIGYLGAMLLLDERQDVHLLITNCLKN
DLNSSTQFVVGLALCTLGAIASPEMARDLASEVERLMKSPNTYIRKKATL
CAFRVIRRVPELMEIFLPATRSLLSEKNHGILITGVTLITEMCENSSDTL
MHFKKIVPNLVRILKNLILGGYSPEHDVSGVSDPFLQVKILRLLRILGHN
DPDASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIRSEGGLRVLA
VNILGRFLLNSDKNIRYVALNTLLRTVHADTSAVQRHRTTILECLKDPDV
SIRRRAMELSFALINAQNIRTMTKELLLFLEKADAEFKAQCSSGMILAAE
RYSPTTRWHLDTQLSVLIAAGNYVRDDVVSSTIQLVSSSPVPEQTYITNR
FWESLQVANHCEDKQPLLQVAVWAIGEYGDLFMYGANEDEFERPTESDLI
AVYYKFLTSAQVSTTSKQYALVSLAKLSTRLQQCVEEIQALITSFGSHLN
VDLQQRGVEFTQLFGHYKHLRPPLLEKMPAMQISRISSQNGESGGGSFDD
NSPDVIENGVEGGGGGGHSLIESNMNTLGDNTNILLDLLGSTDLSAGGAG
DLVAATDLSNAVHKKNSRNANDVVAPVSNNQDLLDLLDLDLSAPSSTTTG
APAGGGGGGGIVALVGDNNQSSAANMNNMLGGLDLGGFGSGLDSSASIPT
NGNDLASMLGGLGAPPAASPSLAASAPVGNLIDGHAGSLLADLNPTAASN
NVVVPPQGPRLTALDKDGLLVQLVSVRGSDCMRIYMTTTNNSDNTLDQYL
LQAAVQRSFQLQMLTPSGSVLPPGGVITQEMRVVATSNATLRMRLRIQYV
LDGQQQVEQTEVSGFPEQQPAPAAAEASFLDH
BO31739.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1gamma-PB | 976 | CG9113-PB | 1..976 | 1..976 | 4949 | 100 | Plus |
AP-1gamma-PD | 982 | CG9113-PD | 1..982 | 1..976 | 4932 | 99.4 | Plus |
AP-1gamma-PI | 963 | CG9113-PI | 7..963 | 20..976 | 4836 | 100 | Plus |
AP-1gamma-PF | 963 | CG9113-PF | 7..963 | 20..976 | 4836 | 100 | Plus |
AP-1gamma-PG | 963 | CG9113-PG | 7..963 | 20..976 | 4836 | 100 | Plus |