BO31740.complete Sequence
3466 bp assembled on 2012-05-15
GenBank Submission: KX797525
> BO31740.complete
GAAGTTATCAGTCGACATGTCCTCGCTGGACGCACGCAACAACTCGGCGA
TGATGAAGCGCGCCGAGCAGCTGAAGCGCTGGGAGGAGTCGGACACAAAC
CGCGCCGCCCCCACCCCCCGGCACGAGCACGGCCGCAGGATCAAGTTCAG
CTCCGGCTGTGTCTTCCTCGCCGCCTGCCTTTCCGGCGACAAGGACGAGG
TCGTCCAGCTGCTCGACCAGGGCGCCGACATCAACACCGCCAACGTCGAT
GGACTCACCGCCCTGCACCAGGCGTGCATAGACGACAATCTGGACATGGT
GGAGTTTCTAGTGGAGCGAGGTGCCGACATAAACCGCCAGGATAACGAGG
GCTGGACGCCACTGCACGCCACTGCCTCCTGCGGATTTGTGAGCATAGCT
CGGTATTTGGTGGAAAATGGCGCTGATGTGGCCGCTGTGAACAGCGATGG
TGATTTGGCCTTGGATTTGGCCATCGATGTACAGCACATGGCCATGATTG
ACTACATGGAGAAGATGGTGCAGGAGCTGAACATCAACGTGGATGAGGCT
CGAAAGGCCGAGGAGCTGGCGATGCTGAACGATGCCAAAAAGTGGCTGAG
AAGCGATGCCGCCGAGGTGGATAGACCGCACCCGAAAACGGGAGCCACAG
CCCTCCACGTAGCCGCCGCAAAGGGTTACACGAAAGTGCTGGGTCTGCTC
CTGGCCGGACGTGGCAATGTGGATCGTCAGGATAACGATGGCTGGACGCC
ACTGCACGCGGCATCGCATTGGGGTCAGCGGGAGACGGCCGAGATGCTCG
TGGAGTCACTGGCCGACATGGATATACGAAACTATGCCGGGCAGTCATGC
ATCGATGTGGCCGATCGCAAAATAGTCAAATTCCTGGAAGAACTGCGGGC
CAACAAACGCAACAAGCGGCGACCATCTAGTCAAATAAGAATCTCAGATG
CAATGGAAAATCATGTGGAGAAGACGCCCACTAAACTGGTGCGCGTTGAA
GTGAGAACTGATGCCACAAAGGATGCTGAGAACGTGAAGCCCAACCAGCA
GATCCACGCCGTCGAGCATCCAGTCGAGGAGGAGGCGCCATGGCGACGCA
AACTGCCCCGCACACCCAGCGATAGTCCCACTAATAATCAAGTTCCTGAT
AGAGAGCTCGGCACCAATAGCTCGGAGACCGCCAACGACGTCATTTTGCG
GCGCACGCAAAGCTTTGAGAACGATCAAAAGAAACCGACCGTTACGATTG
CAACGAGCACAGCAGCCACAGCGATCAATTCTCCATCGACAACTGTACAG
ACCCCACCAATTCGCAGCCAAGTTACAGCGAAAATAGCAGAAAAGAGCAA
TAATGGCAGCTCGTCCACGGCCAGTGTCAGCGATGCGGAGAGCTCCAAGC
CACCGCCCAAACAATCCGCGAGCAATATGATCAAGAACTTCTTCAAATCC
TTTGTGCCACCGGTGCGTGATGAAGAGAGCGAAACGCAGCGGAAGGCACA
TGCTAAGCGTGTGAGGGAGACTCGACGGTCTACCCAAGGTGTCACCCTGG
ACGAGATCAAGAGTGCCGAGGAGCTGGTTAAGAAGAAGAACATGGGCATG
GCCAACAACAACAATAACAACAATATTAGCACCACCACCACGAACACGAT
CAGCAACAGCGGCAACGAAACAAGCTCTGCATCATCGACATCAGCTCCAA
CACCATCGATCCTCGGCAGCAATGAGCAGCAGGACGAGCTGCAACCACCG
CCACCGCCCACCACACCACCGCCAGCTGTAATACCCACCACAACAACGGC
CACCGATGAGACAGAGATCGAGGAGGTGGTGTCCAGTCCTCCAGCTGGCC
AAAGTCAAAACGATACCACTGCTAGTTTTACGCTATCGGCTCCCGTGCGA
AGATCGCTGTCGACCGAGGGCGAAGCCGATGCCAATAGTGATCCGGAGGG
TGATCAGGATCAGACGGTGGTCAGTGCCAGCTATACGATAATGCCCAGGC
GGGAGAGGCTTCCCGAAAGCTCCGAGAATGTAGAGAGCATAAGATCGCCA
CAAAAGACTGAGCCAGTTGCCAAAAGTTCCAGCGAGGATAAGTCCGAGGA
GCCACCACATGCCAGGCCCACGGATCTGCCACTAATTCCGGCTCCAGCTG
CTCCCAGCACAGAAGCTATCAAATCATCCTCGGCGGCCACTACGCCCGCT
GCCCTCGAGAGTCCAGTGCGCTTGCGGGATAAGCGGGGTCTGTCCGGCAG
CCAAGAATCGGAAACCAAGTCCGATACCGCCTCGCCCGTGTCCTCACATC
CGGACTTCAATGCCCGGGACTCGCTACTCAGTCTATACGCCCGTCGCACA
ACGGACAGCAGCGCGGGAGGCGGAGGAGTTGGTGGTGGTGCAGGTGTAGG
TGCAGGTGGTGCAAGTGGAGCTGCAACCTCGTCTTCAACTTCGGCAGCGG
AACGGCGTCCGTCTTGGCGCCTGAAATTCGATGCCGGCTCCAAGTTCAAG
TTGGAGGACATAACCAGCGGTGGCACATATCCGCCCAACAACAGCACCAT
CATACCCAGTGCTCCGGCGGTAATGGCAGCCGCCAACTTATCAACCACAA
CTGGTGTCCAGCGGCGCATCAGCAGCGGTCCCATCGCACTAAATGCTTCC
AATCAGTCGCTCAACTCTGTGGGTCGTCCAGTTTCCGCGCCAAGCGAGGG
CACCAACAACAGTGCCTATGTCACGCCCTCAGCTCGCAAATTCGAGACGA
ACGCCACGTCCACGGGAGCGACCACTGCAGCGACCACGACCAGCAACTCA
ACCTCCAATTCAGTGTCTGCAACCAGTGCCAATCATACAACGGCTACGGC
ACCAAATGCCACGTCAAACCATGACGATAAGGATAATGATAAGGAGAACG
ACAATCGCACACAGACGGTTATTCAGAGGCGGCGAAAGCCGAAGCGCAGA
TCAACGGGCGTGGTGCACATCGATATGGATGAACTGGATCCCGAGCGACA
GAACGAATCGTCCAACAACGACAACGAGGAGAAGGAGAAGGAGAGTGGCA
GTGAGCGGACATCCCGTTCCCGGCTGGGCAGCACCGCGAGTACGGCCACC
ACCAGCGAGTCAAAGAGCTCCAGCAGCAATGACAAGACGGAGAATGGCGA
TGGCATTGACTACAAGGCGCTCTGGGAAGCGGAAAAATTGGAGAACGATA
AGCTGAGGCAGATGCTCAAGCAGAAGGACGATGAAGCCGTCCAGACACGT
GCAACACTCGAGAGATTCGCCAATGCCACAACGAAAAATTCACTATCTGA
ACTTGAGAAACGCGAAAGAAGAGCTATGGAACGCAAGCTTTCCGAGTTGG
AAGAAGAGCTCAAGCAACTCGATGCCTACAAATCGGATAATCATCGCCTG
AAGGAGGAGAACGCCGCGTTGATTAGAGTAATTAGCAAATTAAGTAAAGC
AAGCTTTCTAGACCAT
BO31740.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mbs-RI | 3435 | CG32156-PI | 1..3432 | 17..3448 | 17160 | 100 | Plus |
Mbs-RO | 3822 | CG32156-PO | 1602..3819 | 1231..3448 | 11090 | 100 | Plus |
Mbs-RN | 3738 | CG32156-PN | 1605..3651 | 1231..3277 | 10235 | 100 | Plus |
Mbs-RO | 3822 | CG32156-PO | 1..1215 | 17..1231 | 6075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mbs-RI | 5102 | CG32156-RI | 487..3918 | 17..3448 | 17160 | 100 | Plus |
Mbs-RO | 5520 | CG32156-RO | 2119..4336 | 1231..3448 | 11090 | 100 | Plus |
Mbs-RN | 5686 | CG32156-RN | 2372..4418 | 1231..3277 | 10235 | 100 | Plus |
Mbs-RO | 5520 | CG32156-RO | 518..1732 | 17..1231 | 6075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16068113..16068943 | 1664..2494 | 4155 | 100 | Plus |
3L | 28110227 | 3L | 16062307..16062862 | 384..939 | 2780 | 100 | Plus |
3L | 28110227 | 3L | 16053306..16053561 | 17..272 | 1280 | 100 | Plus |
3L | 28110227 | 3L | 16070328..16070581 | 2640..2893 | 1225 | 98.8 | Plus |
3L | 28110227 | 3L | 16066613..16066829 | 1447..1663 | 1085 | 100 | Plus |
3L | 28110227 | 3L | 16070118..16070264 | 2493..2639 | 735 | 100 | Plus |
3L | 28110227 | 3L | 16076980..16077124 | 3042..3186 | 725 | 100 | Plus |
3L | 28110227 | 3L | 16066183..16066313 | 1316..1446 | 655 | 100 | Plus |
3L | 28110227 | 3L | 16062128..16062243 | 269..384 | 580 | 100 | Plus |
3L | 28110227 | 3L | 16063885..16063999 | 1025..1139 | 575 | 100 | Plus |
3L | 28110227 | 3L | 16070832..16070931 | 2882..2981 | 500 | 100 | Plus |
3L | 28110227 | 3L | 16064227..16064318 | 1140..1231 | 460 | 100 | Plus |
3L | 28110227 | 3L | 16077192..16077282 | 3187..3277 | 455 | 100 | Plus |
3L | 28110227 | 3L | 16063086..16063173 | 938..1025 | 440 | 100 | Plus |
3L | 28110227 | 3L | 16066023..16066116 | 1231..1324 | 440 | 97.9 | Plus |
3L | 28110227 | 3L | 16077723..16077809 | 3278..3364 | 435 | 100 | Plus |
3L | 28110227 | 3L | 16080757..16080842 | 3363..3448 | 430 | 100 | Plus |
3L | 28110227 | 3L | 16071109..16071171 | 2981..3043 | 315 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 13:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2523 | 1603..1797 | 311 | 64.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..7019 | 1569..1803 | 234 | 60.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2398..2549 | 1580..1731 | 219 | 62.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2544 | 1569..1767 | 213 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2444..2664 | 1581..1797 | 160 | 56 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1594 | 1603..1673 | 138 | 67.6 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5992..6094 | 1542..1640 | 118 | 60.2 | Plus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2945..3027 | 487..569 | 118 | 65.1 | Plus |
BO31740.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:06 Download gff for
BO31740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mbs-RI | 478..3909 | 17..3450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:22 Download gff for
BO31740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mbs-RI | 487..3918 | 17..3450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:19 Download gff for
BO31740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mbs-RI | 487..3918 | 17..3450 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:19 Download gff for
BO31740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16076982..16077124 | 3044..3186 | 100 | -> | Plus |
3L | 16077192..16077282 | 3187..3277 | 100 | -> | Plus |
3L | 16077723..16077809 | 3278..3364 | 100 | -> | Plus |
3L | 16080759..16080842 | 3365..3450 | 97 | | Plus |
3L | 16053306..16053560 | 17..271 | 100 | -> | Plus |
3L | 16062131..16062243 | 272..384 | 100 | -> | Plus |
3L | 16062308..16062862 | 385..939 | 100 | -> | Plus |
3L | 16063088..16063173 | 940..1025 | 100 | -> | Plus |
3L | 16063886..16063999 | 1026..1139 | 100 | -> | Plus |
3L | 16064227..16064317 | 1140..1230 | 100 | -> | Plus |
3L | 16066023..16066109 | 1231..1317 | 100 | -> | Plus |
3L | 16066185..16066313 | 1318..1446 | 100 | -> | Plus |
3L | 16066613..16066829 | 1447..1663 | 100 | -> | Plus |
3L | 16068113..16068943 | 1664..2494 | 100 | -> | Plus |
3L | 16070120..16070264 | 2495..2639 | 100 | -> | Plus |
3L | 16070328..16070570 | 2640..2882 | 100 | -> | Plus |
3L | 16070833..16070930 | 2883..2980 | 100 | -> | Plus |
3L | 16071109..16071171 | 2981..3043 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:22 Download gff for
BO31740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16063220..16063364 | 2495..2639 | 100 | -> | Plus |
arm_3L | 16046406..16046660 | 17..271 | 100 | -> | Plus |
arm_3L | 16055231..16055343 | 272..384 | 100 | -> | Plus |
arm_3L | 16055408..16055962 | 385..939 | 100 | -> | Plus |
arm_3L | 16056188..16056273 | 940..1025 | 100 | -> | Plus |
arm_3L | 16056986..16057099 | 1026..1139 | 100 | -> | Plus |
arm_3L | 16057327..16057417 | 1140..1230 | 100 | -> | Plus |
arm_3L | 16059123..16059209 | 1231..1317 | 100 | -> | Plus |
arm_3L | 16059285..16059413 | 1318..1446 | 100 | -> | Plus |
arm_3L | 16059713..16059929 | 1447..1663 | 100 | -> | Plus |
arm_3L | 16061213..16062043 | 1664..2494 | 100 | -> | Plus |
arm_3L | 16063428..16063670 | 2640..2882 | 100 | -> | Plus |
arm_3L | 16063933..16064030 | 2883..2980 | 100 | -> | Plus |
arm_3L | 16064209..16064271 | 2981..3043 | 100 | -> | Plus |
arm_3L | 16070082..16070224 | 3044..3186 | 100 | -> | Plus |
arm_3L | 16070292..16070382 | 3187..3277 | 100 | -> | Plus |
arm_3L | 16070823..16070909 | 3278..3364 | 100 | -> | Plus |
arm_3L | 16073859..16073942 | 3365..3450 | 97 | | Plus |
BO31740.pep Sequence
Translation from 16 to 3466
> BO31740.pep
MSSLDARNNSAMMKRAEQLKRWEESDTNRAAPTPRHEHGRRIKFSSGCVF
LAACLSGDKDEVVQLLDQGADINTANVDGLTALHQACIDDNLDMVEFLVE
RGADINRQDNEGWTPLHATASCGFVSIARYLVENGADVAAVNSDGDLALD
LAIDVQHMAMIDYMEKMVQELNINVDEARKAEELAMLNDAKKWLRSDAAE
VDRPHPKTGATALHVAAAKGYTKVLGLLLAGRGNVDRQDNDGWTPLHAAS
HWGQRETAEMLVESLADMDIRNYAGQSCIDVADRKIVKFLEELRANKRNK
RRPSSQIRISDAMENHVEKTPTKLVRVEVRTDATKDAENVKPNQQIHAVE
HPVEEEAPWRRKLPRTPSDSPTNNQVPDRELGTNSSETANDVILRRTQSF
ENDQKKPTVTIATSTAATAINSPSTTVQTPPIRSQVTAKIAEKSNNGSSS
TASVSDAESSKPPPKQSASNMIKNFFKSFVPPVRDEESETQRKAHAKRVR
ETRRSTQGVTLDEIKSAEELVKKKNMGMANNNNNNNISTTTTNTISNSGN
ETSSASSTSAPTPSILGSNEQQDELQPPPPPTTPPPAVIPTTTTATDETE
IEEVVSSPPAGQSQNDTTASFTLSAPVRRSLSTEGEADANSDPEGDQDQT
VVSASYTIMPRRERLPESSENVESIRSPQKTEPVAKSSSEDKSEEPPHAR
PTDLPLIPAPAAPSTEAIKSSSAATTPAALESPVRLRDKRGLSGSQESET
KSDTASPVSSHPDFNARDSLLSLYARRTTDSSAGGGGVGGGAGVGAGGAS
GAATSSSTSAAERRPSWRLKFDAGSKFKLEDITSGGTYPPNNSTIIPSAP
AVMAAANLSTTTGVQRRISSGPIALNASNQSLNSVGRPVSAPSEGTNNSA
YVTPSARKFETNATSTGATTAATTTSNSTSNSVSATSANHTTATAPNATS
NHDDKDNDKENDNRTQTVIQRRRKPKRRSTGVVHIDMDELDPERQNESSN
NDNEEKEKESGSERTSRSRLGSTASTATTSESKSSSSNDKTENGDGIDYK
ALWEAEKLENDKLRQMLKQKDDEAVQTRATLERFANATTKNSLSELEKRE
RRAMERKLSELEEELKQLDAYKSDNHRLKEENAALIRVISKLSKASFLDH
BO31740.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mbs-PI | 1144 | CG32156-PI | 1..1144 | 1..1144 | 5788 | 100 | Plus |
Mbs-PJ | 1101 | CG32156-PJ | 1..1101 | 1..1144 | 5522 | 96.2 | Plus |
Mbs-PQ | 1111 | CG32156-PQ | 1..1103 | 1..1146 | 5453 | 94.8 | Plus |
Mbs-PO | 1273 | CG32156-PO | 1..1273 | 1..1144 | 3910 | 67.6 | Plus |
Mbs-PL | 1230 | CG32156-PL | 1..1230 | 1..1144 | 3644 | 64.1 | Plus |