BO31741.complete Sequence
2131 bp assembled on 2012-05-15
GenBank Submission: KX797630
> BO31741.complete
GAAGTTATCAGTCGACATGCGATTTTCTCTGTTTACCATGCCCCACAATG
CAGCTAAATCGGTCGAGGAGCGCAACATACCATGGAGTCAGCAAGTCGAT
GAGGCCTCGTACGAAAATCTATCCTCTCCCACTCACGATGAAGTCTCTGG
CAATGACAACTCCATGCAATTCCAATATCCGCCGTTCAACTTCAAGGAGA
ATTGCAACACTCCATGGAACAATATGAACAAGGGCCGAAAGGCGAACGCC
AACCATGATTCATATAGAAGACATGGTCATAGTATTCCCAATAACACACG
ACGCGACGAGCACCAAGTAAATCCTTGGAATTCCAGGAAGCCAGCAGCAC
AGTCGTTTCGAAATGAAAACGATCAGCCGTCTACAAAACTGGACAACAGA
ACAAGCGATGAAGCACAAAATCAAGAAGTTGTCGCCGCTCCCAAGAAGAC
AACCTGGGCCTCGATTGCCTCCCAGCCAGCCAAACTAACATCGAGAGCAG
CGTCCACCACTTCCAACAGCAAGAAGAAGGGTCCTGGCATGCCACCACCA
CCCATGGTTCCGGGAAAGCACAATTTAGATGTTAACGTATGGGATTTGCC
GAATAACAAACCACCTCCTGTACCATCTCCACCCTCGCCGATCGATTTGG
GCTATTCCGACTTGAGTTCTGACTTCTCCATATCGAGCAACACGGCACCG
CCATTGGGCGCACGAGCCGAGAAAGTGCACAAGGATACGGAGAACTTCCT
GAAATACGAGCACAAGGGCTTGGGAAATAACAATAACTTCAGCAGAGCCA
AGGTTTCGCCCACGGGACCTGTTCGCAGGAATCTAGGGCCCCAGCAGCCT
GTCCACCATGCCGCCCCACGTCCAGCGACCAATGCCGGTCCATTTGGGCC
ACCGAACGCCAGACGACACGACGGCGGGCCGCATCCAAGCCGGAACTCGG
AGCGCTCGGGCAACTATTCCAGTTTCCGCGGCAGCGAGTTTGAGAGTGCT
TCGAAGTTCGAATACCGCGACGAGAACCAATCACGACCGGTGGAAGCCAC
ATCTGCAACCGAAGAGCTGCCTGTCGATTCCCAACTCGTGTTGGACGAAT
TAAAAGACAAAAACAATTACAACCCAAAAGTGTTGGACTTGAAAAAAGCC
GGATCGGCCAGATTCTTTGTCATCAAATCGTACTCCGAAGATGACATCCA
TCGCAGTATAAAGTATGAGATTTGGTGCTCAACCGATCACGGCAATAAGA
GATTGGACGATGCCTTCAAGGAGCGACACGAAGAGGGCGGCAACATAATG
CTGTTCTTCTCGGTGAATGGATCTGGCCATTTCTGCGGCATGGCACAAAT
GATGACGCCGGTCGACTACAACTCAACGTCGAGCGTCTGGTCGCAGGACA
AGTGGAGGGGCAAGTTCAAGGTGAAATGGATATATGTCAAAGATGTGCCT
AACGGAACGCTGCGTCACATTCGACTGGAGAACAATGAGAATAAGTCGGT
GACGAACTCAAGGGACACCCAGGAAGTGCCCAACGACAAAGGCATCGAGG
TGCTGCAGATTTTGCACTCGTACAACCATTCAACGTCCATATTCGATGAC
TTCTTCCACTATGAAAAGAAGCAGGAGGAAGAGGTGTCCTCGAAGCGTCC
GCCAATGCATGGGCCCGATGGCAACAACCACGCGCCTGCCCCACTCGCCC
GCAGCTTCAATCGCCAGGCGGACGACAAGGACAGGGATCGCGACGGACGC
GGCGGCATGTCACAAAAGCACTTCAATTCTGGAGGAGGAGCTGGTTTCCG
TAATCCAGGTCATAGGGGTGGCGCCGGCAGTGGCGGATCACACAACAATT
ACAGCGAGTATCGTCGAGGCTTCGACATTCATAAATCAAGCAGCGACTAT
CAGTTCAAGGACCGCGATGGCCCGGACTTTGACAGAGAAAATGACTTTGG
GTCCCACTACGGGTCCAATAACCGAAAAAATGAATACAAACACAATAATA
CGAACAAGGCCAGGTTAAAAACCCGAGACCGTGACTTTAGTACTGAACAA
ATTAAAATCGGCGTGCGCTTTAAGGACACGGACAAGGATAAAATGCGAAG
CAATGAATATTCAGCAAGCTTTCTAGACCAT
BO31741.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6422-RB | 2100 | CG6422-PB | 1..2097 | 17..2113 | 10470 | 100 | Plus |
| CG6422-RD | 2103 | CG6422-PD | 38..2100 | 51..2113 | 10300 | 100 | Plus |
| CG6422-RC | 2085 | CG6422-PC | 20..2082 | 51..2113 | 10300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6422-RB | 2832 | CG6422-RB | 296..2392 | 17..2113 | 10470 | 100 | Plus |
| CG6422-RD | 2862 | CG6422-RD | 360..2422 | 51..2113 | 10300 | 100 | Plus |
| CG6422-RC | 2616 | CG6422-RC | 114..2176 | 51..2113 | 10300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25034687..25035603 | 2075..1159 | 4570 | 99.9 | Minus |
| 3R | 32079331 | 3R | 25035667..25036331 | 1161..497 | 3325 | 100 | Minus |
| 3R | 32079331 | 3R | 25036392..25036538 | 497..351 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 25038420..25038553 | 150..17 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 25038211..25038319 | 257..149 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 25036623..25036718 | 352..257 | 480 | 100 | Minus |
| 3R | 32079331 | 3R | 25034585..25034625 | 2113..2073 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:03:57 has no hits.
BO31741.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:07 Download gff for
BO31741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6422-RB | 292..2388 | 17..2115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:28 Download gff for
BO31741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6422-RB | 296..2392 | 17..2115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:33 Download gff for
BO31741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6422-RB | 296..2392 | 17..2115 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:33 Download gff for
BO31741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25038421..25038553 | 17..149 | 100 | | Minus |
| 3R | 25034583..25034623 | 2075..2115 | 95 | <- | Minus |
| 3R | 25034688..25035600 | 1162..2074 | 99 | <- | Minus |
| 3R | 25035667..25036331 | 497..1161 | 100 | <- | Minus |
| 3R | 25036393..25036536 | 353..496 | 100 | <- | Minus |
| 3R | 25036623..25036717 | 258..352 | 100 | <- | Minus |
| 3R | 25038211..25038318 | 150..257 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:28 Download gff for
BO31741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20860305..20860345 | 2075..2115 | 95 | <- | Minus |
| arm_3R | 20860410..20861322 | 1162..2074 | 99 | <- | Minus |
| arm_3R | 20861389..20862053 | 497..1161 | 100 | <- | Minus |
| arm_3R | 20862115..20862258 | 353..496 | 100 | <- | Minus |
| arm_3R | 20862345..20862439 | 258..352 | 100 | <- | Minus |
| arm_3R | 20863933..20864040 | 150..257 | 100 | <- | Minus |
| arm_3R | 20864143..20864275 | 17..149 | 100 | | Minus |
BO31741.pep Sequence
Translation from 16 to 2131
> BO31741.pep
MRFSLFTMPHNAAKSVEERNIPWSQQVDEASYENLSSPTHDEVSGNDNSM
QFQYPPFNFKENCNTPWNNMNKGRKANANHDSYRRHGHSIPNNTRRDEHQ
VNPWNSRKPAAQSFRNENDQPSTKLDNRTSDEAQNQEVVAAPKKTTWASI
ASQPAKLTSRAASTTSNSKKKGPGMPPPPMVPGKHNLDVNVWDLPNNKPP
PVPSPPSPIDLGYSDLSSDFSISSNTAPPLGARAEKVHKDTENFLKYEHK
GLGNNNNFSRAKVSPTGPVRRNLGPQQPVHHAAPRPATNAGPFGPPNARR
HDGGPHPSRNSERSGNYSSFRGSEFESASKFEYRDENQSRPVEATSATEE
LPVDSQLVLDELKDKNNYNPKVLDLKKAGSARFFVIKSYSEDDIHRSIKY
EIWCSTDHGNKRLDDAFKERHEEGGNIMLFFSVNGSGHFCGMAQMMTPVD
YNSTSSVWSQDKWRGKFKVKWIYVKDVPNGTLRHIRLENNENKSVTNSRD
TQEVPNDKGIEVLQILHSYNHSTSIFDDFFHYEKKQEEEVSSKRPPMHGP
DGNNHAPAPLARSFNRQADDKDRDRDGRGGMSQKHFNSGGGAGFRNPGHR
GGAGSGGSHNNYSEYRRGFDIHKSSSDYQFKDRDGPDFDRENDFGSHYGS
NNRKNEYKHNNTNKARLKTRDRDFSTEQIKIGVRFKDTDKDKMRSNEYSA
SFLDH
BO31741.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6422-PB | 699 | CG6422-PB | 1..699 | 1..699 | 3804 | 100 | Plus |
| CG6422-PD | 700 | CG6422-PD | 9..700 | 8..699 | 3751 | 99.6 | Plus |
| CG6422-PC | 694 | CG6422-PC | 3..694 | 8..699 | 3751 | 99.6 | Plus |
| CG6422-PA | 700 | CG6422-PA | 9..700 | 8..699 | 3751 | 99.6 | Plus |
