BO31749.complete Sequence
3232 bp assembled on 2012-05-15
GenBank Submission: KX797489
> BO31749.complete
GAAGTTATCAGTCGACATGGTTTATTTCGGCGATCGGCAACGCGATCGCA
ATCGCGATCGGAGTAATCAGAAAGTCGAGCGAATCATTCACGATGAAGAG
TTTGGCGAGGAGAACGTCGAGTTGGTGGACTCGGAGTGGGCGGACTTCGA
GAAGTTCATTTGCCAGTTGCGCAAGCGGCGGAACAGTGCTATGTCCATGG
AGGAGGAACTGCGTCACGTGCAGCGGCATCCGAAGATCAAGTCGCACGCC
TTCTATCCGTGCCCGCCGCCAGCTGAAAATGCTCGGGATTCGGACTCCTC
GGACGATGATGATCCCATCGGATACATCGATACTCTTATGTATGGTCGCT
ATACCAAAGATCTAGGAGAATTTGCCAAGGATGAAGCCAGAAAGCTCAAA
ATACTCGAAAAGCGACGAAAGCAGGAAGATAAGCAAAGGAATAAGGAACT
GCTGGGCAAACATTCGACCCGGGCGAAGCGGGTATCATCATGGATCTGGA
GGCACACGGTGGCCCGACTGGGCGAGGATTGGGTATTCCTGGCCCTACTG
GGCATCATTATGGCCCTGCTCTCGTTCATCATGGACAAGGGCATATCCAT
ATGTACAAACGCGCGAATTTGGCTGTATCGCGATCTGACGTCACAGCCTT
TTGTTCAGTACATCGCATGGGTCTCACTGCCGGTCTGTTTGATATTGTTC
TCAGCCGGCTTTGTCCATCTCATCGCACCGCAAAGTATAGGTTCTGGTAT
ACCCGAAATGAAGACCATACTGCGCGGCGTTCAATTGAAAGAGTATCTCA
CATTTAAGACACTAGTGGCCAAGGTAATTGGTTTAACGGCAACTCTGGGC
AGCGGTATGCCATTAGGAAAGGAAGGTCCTTTCGTACATATAGCAAGTAT
TGTAGCACAATTATTAAGTAAACTTGTCACATCATTCCAAGGCATATATG
AGAATGAGTCGCGAAACTCTGAAATGTTGGCGGCAGCCTGTGCTGTCGGT
GTGGGCGCCTGTTTTGCCGCTCCAGTCGGTGGTGTGCTCTTCAGCATAGA
GGTCACCACCACGTACTTCGCTGTGCGTAACTACTGGCGCGGATTCTTTG
CGGCTGTGTGCGGCGCCACTGTCTTTCGGCTCCTGGCCGTTTGGTTCCAA
AACGCGGACACCGTCCGCGCCCTGTTCCTCACGAACTTCACCACCGAGTT
TCCCTTCGATCCTCAGGAGCTGTTCGTCTTTGCTTTGATTGGACTTGTGT
GCGGCTTGGGTGGCGCATCATATGTGTGGGTCCATCGGCGATATGTCCTC
TTCATGAGATCCAACAAGCGGATGAACAAGTTCCTGCAGAAAAATCGCTT
TTTGTATCCGGGATTCCTGGCTCTGCTGGTGTCCAGCATCTCGTTTCCAC
TGGGCACGGGTCAGTTCCTGGCCGGCGAACTAAGTACCCACGAGCAGGTG
ACACAGCTTTTTAGCAATTTCACGTGGTCACGAGATGATCTTACTGTGGA
GCAGGCGGCTGTAGTGACCCACTGGATGACCAGTTACACCAGCGTCTTTG
GCAACCTTGTCATCTACACCCTCTTTACGTTTGTGGTCTCCATTATCGCA
TCCACGATACCAGTTCCGTCGGGCATGTTCATTCCGGTTTTCAAGATCGG
TGCTGGCTTTGGTCGTCTGGTGGGCGAGTTCATGGCGGTGACATTTCCCC
ACGGCGTCCGGTATGGCGGTCGTCTCTCGCCCATCATGCCCGGAGGCTAT
GCCGTCGTCGGAGCGGCCGCCTTTTCTGGCTCCGTGACCCACACGGTGTC
TGTGGCGGTGATCATTTTCGAGATGACTGGTCAGATTACGCACGTGGTAC
CCGTCATGATTGCTGTGCTGGTGGCCAATGCCGTGGCGGCGCTGCTCCAA
CCGTCGATATACGACAGTATTATATTGATTAAGAAGCTGCCCTACCTGCC
GGATCTGCTGCCCTCCAGTTCCGGGATGTACAGCATATTCGTCGAGGACT
TTATGGTGCGGGATGTAAAGTACATATGGCACGGCATCTCGTATCAGAAG
CTCAAAGAAGTCCTCAAGCTGAACAAGACGCTGAGATCCTTGCCACTGGT
GGACAGCCCGGACAACATGATCCTGCTGGGTTCCGTGCAGCGGTACGAGC
TGATCAAAATGATCGAGAAGCACATTGGACGCGAGAAGCGAATGGAGGTG
GCCCAGAAGTGGCAGAAGGAGGCTCAGGAAAGAGCCCTCGAGGAGGAGAA
GAAGAAACAGGAAGTGGAGCTCAAGATGCGGCGACCATCTCGATTCGAGG
TCCTTCCAGCTCCGGATATTCTCAGTTTACGCCAGATTGCCAACGACGAA
ATGCTGCCGCCCAAGAAAAGGGCGGAGACAATGCACGGTTCGCTGGCGCC
CAGGAAGTCCATTTTGAAGAAGACCAACTCCTTCAACCTGAAGACCTACG
CGCAGCCCATGGGGCACAGTCCCAGCATCACGCCCTACACCACGATCACC
GGCAATTCCGAGTTCCGCATTCGCTCAGCCTTCGAGGCCATATTTAAGAA
GTCCACCACGCTCCAGGACGTACAGCCGGATCCGGAAACGGGTTCCCTCT
CCCCGGCGGCAAGCAACCACGAGGTGGAGGTGCCGCGAACTCCTAGCACT
CCCGGTGTTTCCAAAAAGGTTCAGCTGCCCAGGGAACGTGTTATTGACAT
GTCACCGGAGGATCAGAAGCAATGGGAGCTCGAGGAAATGTTGAAGCCCA
TCGATTTGCAGAAGGCCAATGTCCACATCGATCCCTCGCCATTTCAGCTG
GTGGAACGCACCTCCATACTCAAGGTTCACTCGTTGTTTTCCATGGTGGG
TATTAACCACGCCTATGTCACCAAAATCGGAAGACTTGTTGGTGTCGTGG
GACTCAAAGAATTGCGAAAAGCCATCGAGGACATTAATAGCAATAGTTTC
GTGCCCCCCACACGGGATGAGGATGCGGATGAGAAGCCGGCGGTGGAGAA
ACCTCTGCTGTCGACGAACTCTAGTGATAAGGCCGTGGACATGACCGTCA
CCTCCATGGACTCGGCACTATCCAATTCCGAGAACTGTTCGGACATTGAA
ATGGAGCACATAAAGCACACGGATAAGGGCACTGTATCGCTCACCATGCC
GCCACAGGAATCTAAGCAAAGTCCATCGGCGGACAAAAGTAACACAGAAA
ACGGAAATCATGCTGCAAGCTTTCTAGACCAT
BO31749.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ClC-a-RF | 3201 | CG31116-PF | 1..3198 | 17..3214 | 15990 | 100 | Plus |
ClC-a-RC | 3150 | CG31116-PC | 270..3147 | 337..3214 | 14390 | 100 | Plus |
ClC-a-RG | 3057 | CG31116-PG | 178..3054 | 338..3214 | 14385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ClC-a-RF | 3613 | CG31116-RF | 215..3412 | 17..3214 | 15990 | 100 | Plus |
ClC-a-RC | 3972 | CG31116-RC | 894..3771 | 337..3214 | 14390 | 100 | Plus |
ClC-a-RG | 4031 | CG31116-RG | 954..3830 | 338..3214 | 14385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:16:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11798991..11800089 | 2677..1579 | 5495 | 100 | Minus |
3R | 32079331 | 3R | 11806033..11806353 | 337..17 | 1605 | 100 | Minus |
3R | 32079331 | 3R | 11797445..11797747 | 3214..2912 | 1515 | 100 | Minus |
3R | 32079331 | 3R | 11797806..11798040 | 2911..2677 | 1175 | 100 | Minus |
3R | 32079331 | 3R | 11800141..11800375 | 1579..1345 | 1175 | 100 | Minus |
3R | 32079331 | 3R | 11800592..11800803 | 1242..1031 | 1060 | 100 | Minus |
3R | 32079331 | 3R | 11802170..11802337 | 611..444 | 840 | 100 | Minus |
3R | 32079331 | 3R | 11800870..11801028 | 1033..875 | 795 | 100 | Minus |
3R | 32079331 | 3R | 11801159..11801296 | 875..738 | 690 | 100 | Minus |
3R | 32079331 | 3R | 11801950..11802081 | 742..611 | 660 | 100 | Minus |
3R | 32079331 | 3R | 11802583..11802691 | 446..338 | 545 | 100 | Minus |
3R | 32079331 | 3R | 11800438..11800540 | 1344..1242 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:16:33 has no hits.
BO31749.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:09 Download gff for
BO31749.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ClC-a-RF | 209..3406 | 17..3216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:46 Download gff for
BO31749.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ClC-a-RF | 215..3412 | 17..3216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:39:30 Download gff for
BO31749.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ClC-a-RF | 215..3412 | 17..3216 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:39:30 Download gff for
BO31749.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11797442..11797747 | 2912..3216 | 99 | <- | Minus |
3R | 11797806..11798039 | 2678..2911 | 100 | <- | Minus |
3R | 11798991..11800088 | 1580..2677 | 100 | <- | Minus |
3R | 11800141..11800375 | 1345..1579 | 100 | <- | Minus |
3R | 11800438..11800539 | 1243..1344 | 100 | <- | Minus |
3R | 11800592..11800802 | 1032..1242 | 100 | <- | Minus |
3R | 11800872..11801028 | 875..1031 | 100 | <- | Minus |
3R | 11801160..11801293 | 741..874 | 100 | <- | Minus |
3R | 11801952..11802080 | 612..740 | 100 | <- | Minus |
3R | 11802170..11802335 | 446..611 | 100 | <- | Minus |
3R | 11802584..11802691 | 338..445 | 100 | <- | Minus |
3R | 11806033..11806353 | 17..337 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:46 Download gff for
BO31749.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7623164..7623469 | 2912..3216 | 99 | <- | Minus |
arm_3R | 7623528..7623761 | 2678..2911 | 100 | <- | Minus |
arm_3R | 7624713..7625810 | 1580..2677 | 100 | <- | Minus |
arm_3R | 7625863..7626097 | 1345..1579 | 100 | <- | Minus |
arm_3R | 7626160..7626261 | 1243..1344 | 100 | <- | Minus |
arm_3R | 7626314..7626524 | 1032..1242 | 100 | <- | Minus |
arm_3R | 7626594..7626750 | 875..1031 | 100 | <- | Minus |
arm_3R | 7626882..7627015 | 741..874 | 100 | <- | Minus |
arm_3R | 7627674..7627802 | 612..740 | 100 | <- | Minus |
arm_3R | 7627892..7628057 | 446..611 | 100 | <- | Minus |
arm_3R | 7628306..7628413 | 338..445 | 100 | <- | Minus |
arm_3R | 7631755..7632075 | 17..337 | 100 | | Minus |
BO31749.pep Sequence
Translation from 16 to 3232
> BO31749.pep
MVYFGDRQRDRNRDRSNQKVERIIHDEEFGEENVELVDSEWADFEKFICQ
LRKRRNSAMSMEEELRHVQRHPKIKSHAFYPCPPPAENARDSDSSDDDDP
IGYIDTLMYGRYTKDLGEFAKDEARKLKILEKRRKQEDKQRNKELLGKHS
TRAKRVSSWIWRHTVARLGEDWVFLALLGIIMALLSFIMDKGISICTNAR
IWLYRDLTSQPFVQYIAWVSLPVCLILFSAGFVHLIAPQSIGSGIPEMKT
ILRGVQLKEYLTFKTLVAKVIGLTATLGSGMPLGKEGPFVHIASIVAQLL
SKLVTSFQGIYENESRNSEMLAAACAVGVGACFAAPVGGVLFSIEVTTTY
FAVRNYWRGFFAAVCGATVFRLLAVWFQNADTVRALFLTNFTTEFPFDPQ
ELFVFALIGLVCGLGGASYVWVHRRYVLFMRSNKRMNKFLQKNRFLYPGF
LALLVSSISFPLGTGQFLAGELSTHEQVTQLFSNFTWSRDDLTVEQAAVV
THWMTSYTSVFGNLVIYTLFTFVVSIIASTIPVPSGMFIPVFKIGAGFGR
LVGEFMAVTFPHGVRYGGRLSPIMPGGYAVVGAAAFSGSVTHTVSVAVII
FEMTGQITHVVPVMIAVLVANAVAALLQPSIYDSIILIKKLPYLPDLLPS
SSGMYSIFVEDFMVRDVKYIWHGISYQKLKEVLKLNKTLRSLPLVDSPDN
MILLGSVQRYELIKMIEKHIGREKRMEVAQKWQKEAQERALEEEKKKQEV
ELKMRRPSRFEVLPAPDILSLRQIANDEMLPPKKRAETMHGSLAPRKSIL
KKTNSFNLKTYAQPMGHSPSITPYTTITGNSEFRIRSAFEAIFKKSTTLQ
DVQPDPETGSLSPAASNHEVEVPRTPSTPGVSKKVQLPRERVIDMSPEDQ
KQWELEEMLKPIDLQKANVHIDPSPFQLVERTSILKVHSLFSMVGINHAY
VTKIGRLVGVVGLKELRKAIEDINSNSFVPPTRDEDADEKPAVEKPLLST
NSSDKAVDMTVTSMDSALSNSENCSDIEMEHIKHTDKGTVSLTMPPQESK
QSPSADKSNTENGNHAASFLDH
BO31749.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ClC-a-PF | 1066 | CG31116-PF | 1..1066 | 1..1066 | 5481 | 100 | Plus |
ClC-a-PG | 1018 | CG31116-PG | 44..1018 | 92..1066 | 4939 | 99 | Plus |
ClC-a-PC | 1049 | CG31116-PC | 91..1049 | 108..1066 | 4904 | 100 | Plus |
ClC-a-PD | 1193 | CG31116-PD | 1..890 | 1..890 | 4573 | 99.8 | Plus |
ClC-a-PH | 1145 | CG31116-PH | 44..842 | 92..890 | 4031 | 98.5 | Plus |
ClC-a-PD | 1193 | CG31116-PD | 1010..1193 | 883..1066 | 930 | 98.9 | Plus |