Clone BO31749 Report

Search the DGRC for BO31749

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:317
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptClC-a-RF
Protein status:BO31749.pep: Imported from assembly
Sequenced Size:3232

Clone Sequence Records

BO31749.complete Sequence

3232 bp assembled on 2012-05-15

GenBank Submission: KX797489

> BO31749.complete
GAAGTTATCAGTCGACATGGTTTATTTCGGCGATCGGCAACGCGATCGCA
ATCGCGATCGGAGTAATCAGAAAGTCGAGCGAATCATTCACGATGAAGAG
TTTGGCGAGGAGAACGTCGAGTTGGTGGACTCGGAGTGGGCGGACTTCGA
GAAGTTCATTTGCCAGTTGCGCAAGCGGCGGAACAGTGCTATGTCCATGG
AGGAGGAACTGCGTCACGTGCAGCGGCATCCGAAGATCAAGTCGCACGCC
TTCTATCCGTGCCCGCCGCCAGCTGAAAATGCTCGGGATTCGGACTCCTC
GGACGATGATGATCCCATCGGATACATCGATACTCTTATGTATGGTCGCT
ATACCAAAGATCTAGGAGAATTTGCCAAGGATGAAGCCAGAAAGCTCAAA
ATACTCGAAAAGCGACGAAAGCAGGAAGATAAGCAAAGGAATAAGGAACT
GCTGGGCAAACATTCGACCCGGGCGAAGCGGGTATCATCATGGATCTGGA
GGCACACGGTGGCCCGACTGGGCGAGGATTGGGTATTCCTGGCCCTACTG
GGCATCATTATGGCCCTGCTCTCGTTCATCATGGACAAGGGCATATCCAT
ATGTACAAACGCGCGAATTTGGCTGTATCGCGATCTGACGTCACAGCCTT
TTGTTCAGTACATCGCATGGGTCTCACTGCCGGTCTGTTTGATATTGTTC
TCAGCCGGCTTTGTCCATCTCATCGCACCGCAAAGTATAGGTTCTGGTAT
ACCCGAAATGAAGACCATACTGCGCGGCGTTCAATTGAAAGAGTATCTCA
CATTTAAGACACTAGTGGCCAAGGTAATTGGTTTAACGGCAACTCTGGGC
AGCGGTATGCCATTAGGAAAGGAAGGTCCTTTCGTACATATAGCAAGTAT
TGTAGCACAATTATTAAGTAAACTTGTCACATCATTCCAAGGCATATATG
AGAATGAGTCGCGAAACTCTGAAATGTTGGCGGCAGCCTGTGCTGTCGGT
GTGGGCGCCTGTTTTGCCGCTCCAGTCGGTGGTGTGCTCTTCAGCATAGA
GGTCACCACCACGTACTTCGCTGTGCGTAACTACTGGCGCGGATTCTTTG
CGGCTGTGTGCGGCGCCACTGTCTTTCGGCTCCTGGCCGTTTGGTTCCAA
AACGCGGACACCGTCCGCGCCCTGTTCCTCACGAACTTCACCACCGAGTT
TCCCTTCGATCCTCAGGAGCTGTTCGTCTTTGCTTTGATTGGACTTGTGT
GCGGCTTGGGTGGCGCATCATATGTGTGGGTCCATCGGCGATATGTCCTC
TTCATGAGATCCAACAAGCGGATGAACAAGTTCCTGCAGAAAAATCGCTT
TTTGTATCCGGGATTCCTGGCTCTGCTGGTGTCCAGCATCTCGTTTCCAC
TGGGCACGGGTCAGTTCCTGGCCGGCGAACTAAGTACCCACGAGCAGGTG
ACACAGCTTTTTAGCAATTTCACGTGGTCACGAGATGATCTTACTGTGGA
GCAGGCGGCTGTAGTGACCCACTGGATGACCAGTTACACCAGCGTCTTTG
GCAACCTTGTCATCTACACCCTCTTTACGTTTGTGGTCTCCATTATCGCA
TCCACGATACCAGTTCCGTCGGGCATGTTCATTCCGGTTTTCAAGATCGG
TGCTGGCTTTGGTCGTCTGGTGGGCGAGTTCATGGCGGTGACATTTCCCC
ACGGCGTCCGGTATGGCGGTCGTCTCTCGCCCATCATGCCCGGAGGCTAT
GCCGTCGTCGGAGCGGCCGCCTTTTCTGGCTCCGTGACCCACACGGTGTC
TGTGGCGGTGATCATTTTCGAGATGACTGGTCAGATTACGCACGTGGTAC
CCGTCATGATTGCTGTGCTGGTGGCCAATGCCGTGGCGGCGCTGCTCCAA
CCGTCGATATACGACAGTATTATATTGATTAAGAAGCTGCCCTACCTGCC
GGATCTGCTGCCCTCCAGTTCCGGGATGTACAGCATATTCGTCGAGGACT
TTATGGTGCGGGATGTAAAGTACATATGGCACGGCATCTCGTATCAGAAG
CTCAAAGAAGTCCTCAAGCTGAACAAGACGCTGAGATCCTTGCCACTGGT
GGACAGCCCGGACAACATGATCCTGCTGGGTTCCGTGCAGCGGTACGAGC
TGATCAAAATGATCGAGAAGCACATTGGACGCGAGAAGCGAATGGAGGTG
GCCCAGAAGTGGCAGAAGGAGGCTCAGGAAAGAGCCCTCGAGGAGGAGAA
GAAGAAACAGGAAGTGGAGCTCAAGATGCGGCGACCATCTCGATTCGAGG
TCCTTCCAGCTCCGGATATTCTCAGTTTACGCCAGATTGCCAACGACGAA
ATGCTGCCGCCCAAGAAAAGGGCGGAGACAATGCACGGTTCGCTGGCGCC
CAGGAAGTCCATTTTGAAGAAGACCAACTCCTTCAACCTGAAGACCTACG
CGCAGCCCATGGGGCACAGTCCCAGCATCACGCCCTACACCACGATCACC
GGCAATTCCGAGTTCCGCATTCGCTCAGCCTTCGAGGCCATATTTAAGAA
GTCCACCACGCTCCAGGACGTACAGCCGGATCCGGAAACGGGTTCCCTCT
CCCCGGCGGCAAGCAACCACGAGGTGGAGGTGCCGCGAACTCCTAGCACT
CCCGGTGTTTCCAAAAAGGTTCAGCTGCCCAGGGAACGTGTTATTGACAT
GTCACCGGAGGATCAGAAGCAATGGGAGCTCGAGGAAATGTTGAAGCCCA
TCGATTTGCAGAAGGCCAATGTCCACATCGATCCCTCGCCATTTCAGCTG
GTGGAACGCACCTCCATACTCAAGGTTCACTCGTTGTTTTCCATGGTGGG
TATTAACCACGCCTATGTCACCAAAATCGGAAGACTTGTTGGTGTCGTGG
GACTCAAAGAATTGCGAAAAGCCATCGAGGACATTAATAGCAATAGTTTC
GTGCCCCCCACACGGGATGAGGATGCGGATGAGAAGCCGGCGGTGGAGAA
ACCTCTGCTGTCGACGAACTCTAGTGATAAGGCCGTGGACATGACCGTCA
CCTCCATGGACTCGGCACTATCCAATTCCGAGAACTGTTCGGACATTGAA
ATGGAGCACATAAAGCACACGGATAAGGGCACTGTATCGCTCACCATGCC
GCCACAGGAATCTAAGCAAAGTCCATCGGCGGACAAAAGTAACACAGAAA
ACGGAAATCATGCTGCAAGCTTTCTAGACCAT

BO31749.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-a-RF 3201 CG31116-PF 1..3198 17..3214 15990 100 Plus
ClC-a-RC 3150 CG31116-PC 270..3147 337..3214 14390 100 Plus
ClC-a-RG 3057 CG31116-PG 178..3054 338..3214 14385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-a-RF 3613 CG31116-RF 215..3412 17..3214 15990 100 Plus
ClC-a-RC 3972 CG31116-RC 894..3771 337..3214 14390 100 Plus
ClC-a-RG 4031 CG31116-RG 954..3830 338..3214 14385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11798991..11800089 2677..1579 5495 100 Minus
3R 32079331 3R 11806033..11806353 337..17 1605 100 Minus
3R 32079331 3R 11797445..11797747 3214..2912 1515 100 Minus
3R 32079331 3R 11797806..11798040 2911..2677 1175 100 Minus
3R 32079331 3R 11800141..11800375 1579..1345 1175 100 Minus
3R 32079331 3R 11800592..11800803 1242..1031 1060 100 Minus
3R 32079331 3R 11802170..11802337 611..444 840 100 Minus
3R 32079331 3R 11800870..11801028 1033..875 795 100 Minus
3R 32079331 3R 11801159..11801296 875..738 690 100 Minus
3R 32079331 3R 11801950..11802081 742..611 660 100 Minus
3R 32079331 3R 11802583..11802691 446..338 545 100 Minus
3R 32079331 3R 11800438..11800540 1344..1242 515 100 Minus
Blast to na_te.dros performed on 2014-11-28 11:16:33 has no hits.

BO31749.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:09 Download gff for BO31749.complete
Subject Subject Range Query Range Percent Splice Strand
ClC-a-RF 209..3406 17..3216 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:46 Download gff for BO31749.complete
Subject Subject Range Query Range Percent Splice Strand
ClC-a-RF 215..3412 17..3216 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:39:30 Download gff for BO31749.complete
Subject Subject Range Query Range Percent Splice Strand
ClC-a-RF 215..3412 17..3216 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:39:30 Download gff for BO31749.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11797442..11797747 2912..3216 99 <- Minus
3R 11797806..11798039 2678..2911 100 <- Minus
3R 11798991..11800088 1580..2677 100 <- Minus
3R 11800141..11800375 1345..1579 100 <- Minus
3R 11800438..11800539 1243..1344 100 <- Minus
3R 11800592..11800802 1032..1242 100 <- Minus
3R 11800872..11801028 875..1031 100 <- Minus
3R 11801160..11801293 741..874 100 <- Minus
3R 11801952..11802080 612..740 100 <- Minus
3R 11802170..11802335 446..611 100 <- Minus
3R 11802584..11802691 338..445 100 <- Minus
3R 11806033..11806353 17..337 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:46 Download gff for BO31749.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7623164..7623469 2912..3216 99 <- Minus
arm_3R 7623528..7623761 2678..2911 100 <- Minus
arm_3R 7624713..7625810 1580..2677 100 <- Minus
arm_3R 7625863..7626097 1345..1579 100 <- Minus
arm_3R 7626160..7626261 1243..1344 100 <- Minus
arm_3R 7626314..7626524 1032..1242 100 <- Minus
arm_3R 7626594..7626750 875..1031 100 <- Minus
arm_3R 7626882..7627015 741..874 100 <- Minus
arm_3R 7627674..7627802 612..740 100 <- Minus
arm_3R 7627892..7628057 446..611 100 <- Minus
arm_3R 7628306..7628413 338..445 100 <- Minus
arm_3R 7631755..7632075 17..337 100   Minus

BO31749.pep Sequence

Translation from 16 to 3232

> BO31749.pep
MVYFGDRQRDRNRDRSNQKVERIIHDEEFGEENVELVDSEWADFEKFICQ
LRKRRNSAMSMEEELRHVQRHPKIKSHAFYPCPPPAENARDSDSSDDDDP
IGYIDTLMYGRYTKDLGEFAKDEARKLKILEKRRKQEDKQRNKELLGKHS
TRAKRVSSWIWRHTVARLGEDWVFLALLGIIMALLSFIMDKGISICTNAR
IWLYRDLTSQPFVQYIAWVSLPVCLILFSAGFVHLIAPQSIGSGIPEMKT
ILRGVQLKEYLTFKTLVAKVIGLTATLGSGMPLGKEGPFVHIASIVAQLL
SKLVTSFQGIYENESRNSEMLAAACAVGVGACFAAPVGGVLFSIEVTTTY
FAVRNYWRGFFAAVCGATVFRLLAVWFQNADTVRALFLTNFTTEFPFDPQ
ELFVFALIGLVCGLGGASYVWVHRRYVLFMRSNKRMNKFLQKNRFLYPGF
LALLVSSISFPLGTGQFLAGELSTHEQVTQLFSNFTWSRDDLTVEQAAVV
THWMTSYTSVFGNLVIYTLFTFVVSIIASTIPVPSGMFIPVFKIGAGFGR
LVGEFMAVTFPHGVRYGGRLSPIMPGGYAVVGAAAFSGSVTHTVSVAVII
FEMTGQITHVVPVMIAVLVANAVAALLQPSIYDSIILIKKLPYLPDLLPS
SSGMYSIFVEDFMVRDVKYIWHGISYQKLKEVLKLNKTLRSLPLVDSPDN
MILLGSVQRYELIKMIEKHIGREKRMEVAQKWQKEAQERALEEEKKKQEV
ELKMRRPSRFEVLPAPDILSLRQIANDEMLPPKKRAETMHGSLAPRKSIL
KKTNSFNLKTYAQPMGHSPSITPYTTITGNSEFRIRSAFEAIFKKSTTLQ
DVQPDPETGSLSPAASNHEVEVPRTPSTPGVSKKVQLPRERVIDMSPEDQ
KQWELEEMLKPIDLQKANVHIDPSPFQLVERTSILKVHSLFSMVGINHAY
VTKIGRLVGVVGLKELRKAIEDINSNSFVPPTRDEDADEKPAVEKPLLST
NSSDKAVDMTVTSMDSALSNSENCSDIEMEHIKHTDKGTVSLTMPPQESK
QSPSADKSNTENGNHAASFLDH

BO31749.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-a-PF 1066 CG31116-PF 1..1066 1..1066 5481 100 Plus
ClC-a-PG 1018 CG31116-PG 44..1018 92..1066 4939 99 Plus
ClC-a-PC 1049 CG31116-PC 91..1049 108..1066 4904 100 Plus
ClC-a-PD 1193 CG31116-PD 1..890 1..890 4573 99.8 Plus
ClC-a-PH 1145 CG31116-PH 44..842 92..890 4031 98.5 Plus
ClC-a-PD 1193 CG31116-PD 1010..1193 883..1066 930 98.9 Plus