BO31767.complete Sequence
2386 bp assembled on 2012-05-15
GenBank Submission: KX797552
> BO31767.complete
GAAGTTATCAGTCGACATGGCCAGCACCACTGGAAGTGCCCCCAGCCTGG
GACCCCCCCAGAGCGGGAGTGGTGGCTCTGGCACATTGGAGGGCACGCTA
AGCAAGTGGACGAATGTGATGAAGGGCTGGCAGTACCGCTTCTTCGTTCT
GGACGAGAATGCTGGACTGCTGTCCTATTACACGTCGAAGGATAAGATGA
TAAAGGGCGTGAGGCGCGGTTGTGTTCGTTTAAAGGATGCGCTAATCGGA
ATCGACGACCAGGAGGACAACACATTCACAATCACTGTGGACCATAAGAC
CTTCCACTTTCAGGCGCGACACAACGAGGAGCGGGAGCAGTGGGTGCGCC
GCCTGGAGGACACCATTCGACGCCACGCGAACCGGTCGCGTCTGTGGGAC
AGCCAAAGCGCTTTCTACATCGCCGGTGGCTACACGAAGGAAGGGGGCGG
GAGCGGAACAGGCGGCAGAAGACCCAACCACCTGGAGTTGGTGGCGCGCC
GTGTTTCCGAGGCAGATGCCTACCTCCAGCTGATGATTGAGCAAACGAAC
TTACTGGACAAACGCATCGCGGAGCTGACCGATCCGGCGGAGCAGTCTAA
GTGCAAGGCACTCCAGGACAACGCAAATGCCATGCTGGATCACATTAAGC
ACTCGATTGTCAGCCTGCAGATTGCCAAAAACATGGCCCACCCAATAAAT
GGAATCTACAACGGTCCACCGGCCACGGCCTCCACTAGTTCCTCAACCAG
TGGAGTTGCCATGGGCAGTTGTAACAACGTCCAGGCAGGTGGCCTTAAGG
TGCCGCTAGAAGGTCAAGTAATAGGCAAGGGTGAGCTGGTGGACGACGAG
GAAGACTCGGCCACTGAGAACGCCACCACCGCTCCTTTGGGTTTAATTGT
GCCAGCGACCTCATACTCGAGCAGCGAGGGCGAGGAGGACTTCTACGATG
CCTACGACGATCCCTTCACCAGCATTGGCAGCTCCCCGATTGGCTGCGCA
ACGCGCGGCTTTGCGGAAACCACATCGCCTACCCATGAAAAGGCGCCGGA
TGGATTTGCCAACGCCGAGCCAGTGGCTGTGGGCGATTCAGTTGCCCCCC
AAACGCTGCCAGAGATCGATGAAAGTGTTGCCGATGCGGACACCAGCATT
AAGACAGCGAGGACCGCAGTAAGTTCCCGAAGTGCCAGCTACGATAACGG
AATAGACTACGACGCCCTGTACGAGGAGGAGGAAGAGACGGACCTCAGTA
TGGAGGCGCACGGATCGATGATTACGCACTTGCTGTCCCAGGTTAAAATC
GGCATGGACCTCACGAAAGTGGTACTGCCCACGTTTATTCTGGAGCGCCG
CTCGCTCCTGGAAATGTACGCCGATTACTTTGCTCATCCCGATCTGTTTA
TAAAAATATCGGATCTGGATGATCCACGCGACAGAATCGTCCAGGTCTGC
CGCTGGTATATGAGTGCTTACCATGCTGGGCGCAAGAGTGCGGTGGCCAA
GAAGCCGTACAATCCAATTTTGGGAGAAGTATTTCAGTGCCATTGGGACA
TTCCTGGCATATCCCAAGACGCTCAGGAGGTGCGCGACGGTCCAGTGCCT
TGGTGCAGGCGGGATCAACTCACCTTTTTAGCTGAGCAAGTGTCTCACCA
TCCGCCAATTTCTGCCTTCTATGCGGAGCATTATAATAAAAAAATAACAT
TTGCGGCCCATGTATGGACCAAGTCGAAGTTCTTGGGACTCTCCATTGGA
GTTCATAACATTGGTGAGGGTGTTGTGACCCTGGTGGATCGCAGCGAGGA
GTACATAGTGACCTTCCCCAACGGCTACGGCAGGTCTATTCTTACGGTGC
CTTGGATTGAGCTCGGCGGTTCGGTGGAGATCAAGTGTCCACAGTCTGGA
TACTATGCCAACGTGGAGTTCCTCACCAAGCCATTCTATGGCGGCAAACG
GAACAGGGTCTCGGCAGAGGTCTATGCGCCGAGCGAAAAGAAGCCTTTCG
TCTCTATTACGGGCGAGTGGAGTGGTTTGATGGAGGCCAAGTGGCATGAT
AAAAACAAAACCGAAGTATTCGTCGACGTAAATCGCATACCCATATTTAA
GAAACAAGTTCGACCAATCGTTGAGCAGGATGAGTACGAATCGCGACGCG
TTTGGAAGGAAGTGACAGCGGGACTCAAGTTCAATGACATCGAGCGCGCT
ACAACTGCCAAATTCGTTGTGGAGCAACAGCAGCGTGATCAAGCCAAGGT
GCGCAAGGAATACGATCTGGCCTGGGAGCACAAGCACTTTAAGCCCGTGG
GCGACAACTGGATCTACGCCAAGCCGCTGAGTCAGCGCATGTATCTGCAG
GAGAAGGAGGCCAAGAGAGCAAGCTTTCTAGACCAT
BO31767.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1513-RA | 2355 | CG1513-PA | 1..2352 | 17..2368 | 11745 | 100 | Plus |
| CG1513-RC | 1410 | CG1513-PC | 35..1407 | 996..2368 | 6850 | 99.9 | Plus |
| CG1513-RB | 1221 | CG1513-PB | 35..1219 | 996..2180 | 5910 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1513-RA | 3827 | CG1513-RA | 288..2639 | 17..2368 | 11745 | 100 | Plus |
| CG1513-RC | 2829 | CG1513-RC | 269..1641 | 996..2368 | 6850 | 99.9 | Plus |
| CG1513-RB | 2911 | CG1513-RB | 269..1453 | 996..2180 | 5910 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:17:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9885573..9885981 | 1404..996 | 2045 | 100 | Minus |
| 2R | 25286936 | 2R | 9887166..9887409 | 872..629 | 1220 | 100 | Minus |
| 2R | 25286936 | 2R | 9888888..9889131 | 550..307 | 1205 | 99.6 | Minus |
| 2R | 25286936 | 2R | 9884961..9885137 | 1835..1659 | 885 | 100 | Minus |
| 2R | 25286936 | 2R | 9891235..9891402 | 184..17 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 9885360..9885512 | 1557..1405 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 9884764..9884903 | 1971..1832 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 9889606..9889736 | 314..184 | 655 | 100 | Minus |
| 2R | 25286936 | 2R | 9886931..9887055 | 996..872 | 625 | 100 | Minus |
| 2R | 25286936 | 2R | 9884083..9884206 | 2180..2057 | 620 | 100 | Minus |
| 2R | 25286936 | 2R | 9883897..9884002 | 2284..2179 | 530 | 100 | Minus |
| 2R | 25286936 | 2R | 9885200..9885302 | 1658..1556 | 500 | 99 | Minus |
| 2R | 25286936 | 2R | 9884622..9884710 | 2056..1968 | 445 | 100 | Minus |
| 2R | 25286936 | 2R | 9883760..9883845 | 2368..2283 | 430 | 100 | Minus |
| 2R | 25286936 | 2R | 9888736..9888814 | 629..551 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:17:25 has no hits.
BO31767.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:16 Download gff for
BO31767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1513-RA | 277..2628 | 17..2370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:04 Download gff for
BO31767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1513-RA | 288..2639 | 17..2370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:39:50 Download gff for
BO31767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1513-RA | 288..2639 | 17..2370 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:39:50 Download gff for
BO31767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9885361..9885512 | 1405..1556 | 100 | <- | Minus |
| 2R | 9883758..9883843 | 2285..2370 | 97 | <- | Minus |
| 2R | 9883897..9884002 | 2179..2284 | 100 | <- | Minus |
| 2R | 9884085..9884206 | 2057..2178 | 100 | <- | Minus |
| 2R | 9884622..9884708 | 1970..2056 | 100 | <- | Minus |
| 2R | 9884766..9884901 | 1834..1969 | 100 | <- | Minus |
| 2R | 9884963..9885137 | 1659..1833 | 100 | <- | Minus |
| 2R | 9885200..9885301 | 1557..1658 | 99 | <- | Minus |
| 2R | 9885573..9885980 | 997..1404 | 100 | <- | Minus |
| 2R | 9886931..9887054 | 873..996 | 100 | <- | Minus |
| 2R | 9887166..9887409 | 629..872 | 100 | <- | Minus |
| 2R | 9888737..9888814 | 551..628 | 100 | <- | Minus |
| 2R | 9888888..9889124 | 314..550 | 100 | <- | Minus |
| 2R | 9889607..9889735 | 185..313 | 100 | <- | Minus |
| 2R | 9891235..9891402 | 17..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:04 Download gff for
BO31767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5772271..5772406 | 1834..1969 | 100 | <- | Minus |
| arm_2R | 5772468..5772642 | 1659..1833 | 100 | <- | Minus |
| arm_2R | 5772705..5772806 | 1557..1658 | 99 | <- | Minus |
| arm_2R | 5772866..5773017 | 1405..1556 | 100 | <- | Minus |
| arm_2R | 5771263..5771348 | 2285..2370 | 97 | <- | Minus |
| arm_2R | 5771402..5771507 | 2179..2284 | 100 | <- | Minus |
| arm_2R | 5771590..5771711 | 2057..2178 | 100 | <- | Minus |
| arm_2R | 5772127..5772213 | 1970..2056 | 100 | <- | Minus |
| arm_2R | 5773078..5773485 | 997..1404 | 100 | <- | Minus |
| arm_2R | 5774436..5774559 | 873..996 | 100 | <- | Minus |
| arm_2R | 5774671..5774914 | 629..872 | 100 | <- | Minus |
| arm_2R | 5776242..5776319 | 551..628 | 100 | <- | Minus |
| arm_2R | 5776393..5776629 | 314..550 | 100 | <- | Minus |
| arm_2R | 5777112..5777240 | 185..313 | 100 | <- | Minus |
| arm_2R | 5778740..5778907 | 17..184 | 100 | | Minus |
BO31767.pep Sequence
Translation from 16 to 2386
> BO31767.pep
MASTTGSAPSLGPPQSGSGGSGTLEGTLSKWTNVMKGWQYRFFVLDENAG
LLSYYTSKDKMIKGVRRGCVRLKDALIGIDDQEDNTFTITVDHKTFHFQA
RHNEEREQWVRRLEDTIRRHANRSRLWDSQSAFYIAGGYTKEGGGSGTGG
RRPNHLELVARRVSEADAYLQLMIEQTNLLDKRIAELTDPAEQSKCKALQ
DNANAMLDHIKHSIVSLQIAKNMAHPINGIYNGPPATASTSSSTSGVAMG
SCNNVQAGGLKVPLEGQVIGKGELVDDEEDSATENATTAPLGLIVPATSY
SSSEGEEDFYDAYDDPFTSIGSSPIGCATRGFAETTSPTHEKAPDGFANA
EPVAVGDSVAPQTLPEIDESVADADTSIKTARTAVSSRSASYDNGIDYDA
LYEEEEETDLSMEAHGSMITHLLSQVKIGMDLTKVVLPTFILERRSLLEM
YADYFAHPDLFIKISDLDDPRDRIVQVCRWYMSAYHAGRKSAVAKKPYNP
ILGEVFQCHWDIPGISQDAQEVRDGPVPWCRRDQLTFLAEQVSHHPPISA
FYAEHYNKKITFAAHVWTKSKFLGLSIGVHNIGEGVVTLVDRSEEYIVTF
PNGYGRSILTVPWIELGGSVEIKCPQSGYYANVEFLTKPFYGGKRNRVSA
EVYAPSEKKPFVSITGEWSGLMEAKWHDKNKTEVFVDVNRIPIFKKQVRP
IVEQDEYESRRVWKEVTAGLKFNDIERATTAKFVVEQQQRDQAKVRKEYD
LAWEHKHFKPVGDNWIYAKPLSQRMYLQEKEAKRASFLDH
BO31767.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1513-PA | 784 | CG1513-PA | 1..784 | 1..784 | 4127 | 100 | Plus |
| CG1513-PC | 469 | CG1513-PC | 13..469 | 328..784 | 2420 | 100 | Plus |
| CG1513-PB | 406 | CG1513-PB | 13..406 | 328..721 | 2083 | 100 | Plus |
| CG42668-PD | 625 | CG5077-PD | 90..422 | 403..750 | 490 | 35.2 | Plus |
| CG42668-PH | 816 | CG5077-PH | 281..613 | 403..750 | 490 | 35.2 | Plus |
