BO31769.complete Sequence
2650 bp assembled on 2012-05-15
GenBank Submission: KX798294
> BO31769.complete
GAAGTTATCAGTCGACATGACACCCGGGCCAAAAACAGAAGAGCCCGGTG
CCGGTAAATTGGCAGCCGAAATAGCCAACTATGTCACCTCATGGATGGGC
AGCGATGGAGCAGAGAATTTGCAAAAGTTTTCTCAGCTGCACTGGGACAA
CGAGTCGCAGTTGAGGACTCAGGAACAGGAGTTTGAAAAGTACTACTTCA
TAGCCATGAAACACTTGGCCAAAGGACGCGACTTGCATGCTGCTGCCCTT
AAAGTTTCTGTCCTAAGTGAAAGCGCCAATAATCTAAAGTCCGCCCTGGA
TCAATTCGCCCAGAAACTGGAGCTGGCCCACGAACGCTATGATGCTGCCG
GGCGTCTGCTGCACTTGCTCACCCAGCATCAGCGGGAAAACGCCGCCAGG
GAGGAACTGCAGCGTTTGGCTGAGCAACTGGGCGCCACCTCGCTGCTGGA
GAAGCACTGGCCGGTGATGCGGAAGACCCATACGTTGCCAGTGGCCAGTA
GCACACCGGCTGCAGCTGCTGGAAAACGGGTTAGCTATCGCTGCAGCTCG
GCCAGTAGGAGTTCCTTTGAGGGAGGTCCATCGAGCAGCAATTGCAGTTG
CTGGCGGGAAAGTCGCAACCTGGAGGACATGGATCAAATGGAAGAGGAGG
AAGAGGAGCAGGATCACGATTGCGACGGTGGTGATGGAGAGGAACAACAG
TCCAAGATCGCCGATTCTGGTTTGGGCGTTTGCGACAATTGCGAACGTAA
TCCCAAGCTGGCCAGGATTTGCTCCTGCCAAAGCCTTAACGAAAAGAGTC
ACGATGAGCTGCTCGAGGACGAGTGCTTCGATCGACCCTCTAAGAGATAC
ATGGACATCATGCACTCGCCCATGGAGGCGAATGCCCATCTGCAGTGCCA
TGGCTCCAGTCTAGAGCTGCCCAAGCTGGAGGAGCTCAGCTGCCTGGATC
CCAAGATACAAAAAACGCTTCTATTGATCATGCGTGAGATGATTGGTACC
GAACGCGACTATGTCCGCTCCCTGTACTACGTGATCGAGAACTATATAGA
TGAACTGCTTCGCGAGGATATCCCTCAGCCACTGAGGGGCCAGAGAAATG
TGATCTTCGGTAATATCGAGAAGATCTTCGAATTCCATAACTCGCACTTC
CTGGGCGAACTGGAACGCTACGAGAGGAATCCATTAAAAGTGGGAGCTGC
CTTTCTGGAGATGGAGTCCAAATTCTACCTATATGCGCTTTACAACAAGA
ATAAACCCAAAAGCGATACTTTACTAAGCGAATATGGTAGCTCATTTTTC
AAGCCCAAGCAAATGCAGCTTCAGGATAAGCTAGATCTAGCCTCTTACCT
CCTGAAACCCGTGCAGAGAATGGGAAAATATGCATTGCTCCTGCAGCAGT
TGGTCAAAGCCTGCAAAGGTGTGGAAGGAGCAGCTCTACAGGAAATCGCA
GCGGATGTAGAAGAGCTGCAGCGAGCAGAAGAAATGGTCAAGTTTCAGCT
ACGCCATGGAAATGATCTGCTGGCCATGGACTCCTTGCGCGATTGCGATG
TGAATGTCAAGGAGCAGGGACGACTACTGCGCCAAAATGAATTCCTCGTT
TGGCAAGGACGCGGTGGCAAGAAAACTCTGCGACAAGTGTTTCTCTTCGA
AGAACTGGTGCTCTTCAGCAAAGCTCGTCGCTTTCCCGATCATAAGAATC
TGGATATCTACATCTACAAGAACAGCATTAAAACTTCAGATATCGGCCTC
ACAGCGCACACAGGTGATTCGGCTACCAAGTTCGAGATTTGGTTCCGGAA
ACGAAAGCCCGATGATACGTGGATGCTACAGTGCATGTCGGAGGACATTA
AGAACGCCTGGACCGAGGAGATCTCCAAACTGCTCTGGAAGCAGGCGAAA
CGAAACCGAGAAGTTCGCCTGGCGGAGATGTCCTCAATGGGCATTGGCAG
CAAGCCCTGTCTAGATATTCGACCCAGCAACAACCAGATCAGCGATCGCT
CGATTCCCTTGGCACAGCTAAACAAGACTCCCAAACTGCGACACTCTGAG
CCTGGAAAGGGCAGCATGCGGCGTCCCAATTCACTGATATCAGAGAGCTC
CTTGTCCAGCGGCACCAGCACTACCAGTGGCTCCTCCATCAGCGGTGGCT
CCTCCTCGGGTCACAATGATGGCGGTGGCAGGCACAGCCTGCACTTTGGC
AAGCTGCCTGGAGCACACAGCGCAAGTTCCACCAACTGCAGTGCCACTTT
GGAGCTGATCAACGAAACTCAGGCCCTGAAGTTGGCCAAATCCCCGAGTG
GAGGTGGAATCAAGGGGGCGGATACGGCCGCCGACGGAGGCAACACTTCC
GGAAACGGAAATGGCAACGGAAACGCATTCAGGAGCAGCAAACGAAACCA
CAAACGATCGACGACCATTGTCAGCCAACTGTCCATGGAGAGCGGCATTG
TCTCGGACATGTGCGTTACCCCGGATCAGGAACAATCGGCGGCGGAGAGC
AGCCGAAGCAGTTGGTCCACATCAACGACTGGAGCATCCGGAGCTTCAAC
GACGAGTGCATCCACGGTAATCCTGCGGCGATATCGATCCTACGCCCACG
CAGCGGAGTCCGCCAGTCCGGAAAGCGGCAAAGCAAGCTTTCTAGACCAT
BO31769.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33275-RC | 2619 | CG33275-PC | 1..2616 | 17..2632 | 13065 | 100 | Plus |
| CG33275-RD | 5697 | CG33275-PD | 3145..5694 | 83..2632 | 12735 | 100 | Plus |
| CG33275-RB | 4287 | CG33275-PB | 1735..4284 | 83..2632 | 12735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:17:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33275-RC | 3253 | CG33275-RC | 98..2714 | 16..2632 | 13070 | 100 | Plus |
| CG33275-RD | 6257 | CG33275-RD | 3169..5718 | 83..2632 | 12735 | 100 | Plus |
| CG33275-RB | 5584 | CG33275-RB | 2496..5045 | 83..2632 | 12735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7636748..7637480 | 964..1696 | 3650 | 99.9 | Plus |
| 3L | 28110227 | 3L | 7635873..7636463 | 208..798 | 2955 | 100 | Plus |
| 3L | 28110227 | 3L | 7638157..7638567 | 2028..2438 | 2055 | 100 | Plus |
| 3L | 28110227 | 3L | 7637686..7637901 | 1695..1910 | 1080 | 100 | Plus |
| 3L | 28110227 | 3L | 7638840..7639034 | 2438..2632 | 975 | 100 | Plus |
| 3L | 28110227 | 3L | 7636524..7636690 | 797..963 | 835 | 100 | Plus |
| 3L | 28110227 | 3L | 7635681..7635806 | 83..208 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 7637957..7638075 | 1909..2027 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 7633546..7633614 | 16..84 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:17:37 has no hits.
BO31769.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:17 Download gff for
BO31769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33275-RC | 70..2685 | 17..2634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:08 Download gff for
BO31769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33275-RC | 99..2714 | 17..2634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:39:52 Download gff for
BO31769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33275-RC | 99..2714 | 17..2634 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:39:52 Download gff for
BO31769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7636526..7636690 | 799..963 | 100 | -> | Plus |
| 3L | 7633547..7633612 | 17..82 | 100 | -> | Plus |
| 3L | 7635681..7635806 | 83..208 | 100 | -> | Plus |
| 3L | 7635874..7636463 | 209..798 | 100 | -> | Plus |
| 3L | 7636748..7637480 | 964..1696 | 99 | -> | Plus |
| 3L | 7637688..7637901 | 1697..1910 | 100 | -> | Plus |
| 3L | 7637959..7638075 | 1911..2027 | 100 | -> | Plus |
| 3L | 7638157..7638567 | 2028..2438 | 100 | -> | Plus |
| 3L | 7638841..7639034 | 2439..2634 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:08 Download gff for
BO31769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7629626..7629790 | 799..963 | 100 | -> | Plus |
| arm_3L | 7626647..7626712 | 17..82 | 100 | -> | Plus |
| arm_3L | 7628781..7628906 | 83..208 | 100 | -> | Plus |
| arm_3L | 7628974..7629563 | 209..798 | 100 | -> | Plus |
| arm_3L | 7629848..7630580 | 964..1696 | 99 | -> | Plus |
| arm_3L | 7630788..7631001 | 1697..1910 | 100 | -> | Plus |
| arm_3L | 7631059..7631175 | 1911..2027 | 100 | -> | Plus |
| arm_3L | 7631257..7631667 | 2028..2438 | 100 | -> | Plus |
| arm_3L | 7631941..7632134 | 2439..2634 | 98 | | Plus |
BO31769.pep Sequence
Translation from 16 to 2650
> BO31769.pep
MTPGPKTEEPGAGKLAAEIANYVTSWMGSDGAENLQKFSQLHWDNESQLR
TQEQEFEKYYFIAMKHLAKGRDLHAAALKVSVLSESANNLKSALDQFAQK
LELAHERYDAAGRLLHLLTQHQRENAAREELQRLAEQLGATSLLEKHWPV
MRKTHTLPVASSTPAAAAGKRVSYRCSSASRSSFEGGPSSSNCSCWRESR
NLEDMDQMEEEEEEQDHDCDGGDGEEQQSKIADSGLGVCDNCERNPKLAR
ICSCQSLNEKSHDELLEDECFDRPSKRYMDIMHSPMEANAHLQCHGSSLE
LPKLEELSCLDPKIQKTLLLIMREMIGTERDYVRSLYYVIENYIDELLRE
DIPQPLRGQRNVIFGNIEKIFEFHNSHFLGELERYERNPLKVGAAFLEME
SKFYLYALYNKNKPKSDTLLSEYGSSFFKPKQMQLQDKLDLASYLLKPVQ
RMGKYALLLQQLVKACKGVEGAALQEIAADVEELQRAEEMVKFQLRHGND
LLAMDSLRDCDVNVKEQGRLLRQNEFLVWQGRGGKKTLRQVFLFEELVLF
SKARRFPDHKNLDIYIYKNSIKTSDIGLTAHTGDSATKFEIWFRKRKPDD
TWMLQCMSEDIKNAWTEEISKLLWKQAKRNREVRLAEMSSMGIGSKPCLD
IRPSNNQISDRSIPLAQLNKTPKLRHSEPGKGSMRRPNSLISESSLSSGT
STTSGSSISGGSSSGHNDGGGRHSLHFGKLPGAHSASSTNCSATLELINE
TQALKLAKSPSGGGIKGADTAADGGNTSGNGNGNGNAFRSSKRNHKRSTT
IVSQLSMESGIVSDMCVTPDQEQSAAESSRSSWSTSTTGASGASTTSAST
VILRRYRSYAHAAESASPESGKASFLDH
BO31769.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33275-PC | 872 | CG33275-PC | 1..872 | 1..872 | 4516 | 100 | Plus |
| CG33275-PD | 1898 | CG33275-PD | 1049..1898 | 23..872 | 4400 | 100 | Plus |
| CG33275-PB | 1428 | CG33275-PB | 579..1428 | 23..872 | 4400 | 100 | Plus |
| CG33275-PA | 1904 | CG33275-PA | 1055..1904 | 23..872 | 4400 | 100 | Plus |
| trio-PC | 2263 | CG18214-PC | 1287..1728 | 321..780 | 458 | 29.6 | Plus |
