BO31770.complete Sequence
1789 bp assembled on 2012-05-15
GenBank Submission: KX799483
> BO31770.complete
GAAGTTATCAGTCGACATGGACTTCGATCAGATCCTGGCCAAATGTGGCG
ACTTTAATCGCTACCAGTTCATGATACTCGCCCTCTTCGGGTTCATTAAT
ATCATCGTATCGATGCATTACTTTACGCAGACTGTCATTAGTTTTGTGCC
AGATCACTGGTGCTATCATGATAAGCTTGTGAATATGACATATAAGGAGA
TCGGTGAGATCTACGCTCAGTTCGAGAATCCCTCGTGCACCCGACTGGAT
GACATCAATGGCCACAATGTCACCGTTAGCAGCAAAGCCTGCGAGAAATG
GATCTACAACTATGATTTCGGCTATAGAAGCATGAACACAGAGCTTAACT
GGGTCTGCGACTCGGCGTACAAGGCACGTATTGGCCAGTCTCTGTTCTTT
ATTGGCTCCGTGGTGGGCACACTTTTCTACGGTCTGCTTTCCGATAAGAT
TGGCCGTGTTCCCGCCCTCATCTTGTCCAACTTCTGCGGCTTTGCCGGCG
ACTTCTCTACCATTTTCACCAAGAGCGTGGCCACTTTCACCCTCTGCCGT
TTTATTTCCGGCCTGGCAGCGGACACAAACTTCTACCTGATGTACATTAT
AGTTCTCGAATATATTCGACCCAGCATGAGAACCCTGGGTCTCAACATGG
CCGTGGGTCTGTTCTACTGCCTGGGCCTGGTTTTCACTCCTTGGCTGGCA
GTTCTGGTGGGTCACTGGCAGATCTACCTGGCCTGCACGTCGCTGCCCAT
TCTGCTGGTGGTGCTGTACTACTTTGTGGTGCAGGAGAGTGCCCAGTGGC
TGGTCACCAGGAATGACATCGACGGGGCCATCGTAAGGCTGAAGCGGGTG
GCCAAGTTCAATGGTTGCCGGGTGAGCCAGGCGGACTTCGACGAGTTCCG
GCGCCATTGCCAAATGACTCACGAAATGCTGGGTGGCGATGACAAGAAGC
AGGCCACTCTGCTGGACATGTTCAGAACGCCACGCATGCGCAAGAACACA
CTCATTCTGTTTTTCAAGAGCATGGTGATCACTCTGTGCTACGATGCCGT
CTCTCGCAACGTGGAGGGCATGGGCATTTCCCCCTTCATCATGTTCTCGC
TGAGTGCCTTGGCAGTGCTGCCCTCGAGTGTCCTGCTGGTCCTGCTGCAG
GATCGCATTGGTCGCAAAGGCATGGCCTCGGGTTCCTTGCTGGTGGGCGG
ACTCTTCACCGCCGCCGCCGGCATTGCGATCGCGTACCAGCAGCACAACC
ACAATGCCATTCTGCTGGCCTGCCTGACCATCGCCGCCCGTTTCGGAGTG
GCCATCTCGTATGAGAGCGGATCTCAGTACGCCACCGAGCTGATCCCCAC
CTGCGTGAGGGGTCAGGGCGTGGCGGCAGTCCACGTGGCCGGATTCGCGG
CCTCCTTCCTGGCGCCCTACATCCTCTGGCTGGGCACCTTCTTTAAGGCG
GCGCCCTCGATCATCCTGGGTGTCCTCTTCTTTGCAGGCTCCTTTGTCTG
CCTGCTGCTGCCAGAGACGCTAAACAGGAGCCTGCCCACGACCATCGAGG
AGGGCGAGGTGTTCGGAAAGGGCGAGCGAATGTTCGACTTCCCGTGCTTG
CACAACAAGCACGACGACGAGGAGTCCGAATCCGAGCTGGAGAAGTACAA
GCGGAAGCACTCCCTGATCGACGCCAAGCAGATGCAGATGGAGTCCTGCT
CGAATGGGAAACGCAAGCAGTCCTTGATCGACGCCGATCACGAGGAACAG
GCCCTGAAGGACGCCAATCACGCAAGCTTTCTAGACCAT
BO31770.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6231-RF | 1758 | CG6231-PF | 1..1755 | 17..1771 | 8775 | 100 | Plus |
| CG6231-RE | 1758 | CG6231-PE | 1..1755 | 17..1771 | 8775 | 100 | Plus |
| CG6231-RA | 1758 | CG6231-PA | 1..1755 | 17..1771 | 8775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:17:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6231-RF | 2730 | CG6231-RF | 357..2113 | 15..1771 | 8785 | 100 | Plus |
| CG6231-RE | 2720 | CG6231-RE | 347..2103 | 15..1771 | 8785 | 100 | Plus |
| CG6231-RA | 3096 | CG6231-RA | 723..2479 | 15..1771 | 8785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19617252..19617761 | 1528..1019 | 2550 | 100 | Minus |
| 3R | 32079331 | 3R | 19617833..19618254 | 1020..599 | 2110 | 100 | Minus |
| 3R | 32079331 | 3R | 19618475..19618735 | 602..342 | 1305 | 100 | Minus |
| 3R | 32079331 | 3R | 19616641..19616887 | 1771..1525 | 1235 | 100 | Minus |
| 3R | 32079331 | 3R | 19618796..19619024 | 343..115 | 1145 | 100 | Minus |
| 3R | 32079331 | 3R | 19619085..19619185 | 115..15 | 505 | 100 | Minus |
| 3R | 32079331 | 3R | 14798056..14798249 | 1325..1518 | 265 | 75.8 | Plus |
| 3R | 32079331 | 3R | 19605347..19605436 | 1019..1108 | 225 | 83.3 | Plus |
| 3R | 32079331 | 3R | 19605922..19605983 | 1331..1392 | 190 | 87.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:17:01 has no hits.
BO31770.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:13 Download gff for
BO31770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6231-RB | 433..2187 | 17..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:57 Download gff for
BO31770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6231-RA | 725..2479 | 17..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:39:42 Download gff for
BO31770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6231-RA | 725..2479 | 17..1773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:39:42 Download gff for
BO31770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19616638..19616884 | 1528..1773 | 99 | <- | Minus |
| 3R | 19617253..19617759 | 1021..1527 | 100 | <- | Minus |
| 3R | 19617833..19618250 | 603..1020 | 100 | <- | Minus |
| 3R | 19618475..19618733 | 344..602 | 100 | <- | Minus |
| 3R | 19618796..19619023 | 116..343 | 100 | <- | Minus |
| 3R | 19619085..19619183 | 17..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:57 Download gff for
BO31770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15442360..15442606 | 1528..1773 | 99 | <- | Minus |
| arm_3R | 15442975..15443481 | 1021..1527 | 100 | <- | Minus |
| arm_3R | 15443555..15443972 | 603..1020 | 100 | <- | Minus |
| arm_3R | 15444197..15444455 | 344..602 | 100 | <- | Minus |
| arm_3R | 15444518..15444745 | 116..343 | 100 | <- | Minus |
| arm_3R | 15444807..15444905 | 17..115 | 100 | | Minus |
BO31770.pep Sequence
Translation from 16 to 1789
> BO31770.pep
MDFDQILAKCGDFNRYQFMILALFGFINIIVSMHYFTQTVISFVPDHWCY
HDKLVNMTYKEIGEIYAQFENPSCTRLDDINGHNVTVSSKACEKWIYNYD
FGYRSMNTELNWVCDSAYKARIGQSLFFIGSVVGTLFYGLLSDKIGRVPA
LILSNFCGFAGDFSTIFTKSVATFTLCRFISGLAADTNFYLMYIIVLEYI
RPSMRTLGLNMAVGLFYCLGLVFTPWLAVLVGHWQIYLACTSLPILLVVL
YYFVVQESAQWLVTRNDIDGAIVRLKRVAKFNGCRVSQADFDEFRRHCQM
THEMLGGDDKKQATLLDMFRTPRMRKNTLILFFKSMVITLCYDAVSRNVE
GMGISPFIMFSLSALAVLPSSVLLVLLQDRIGRKGMASGSLLVGGLFTAA
AGIAIAYQQHNHNAILLACLTIAARFGVAISYESGSQYATELIPTCVRGQ
GVAAVHVAGFAASFLAPYILWLGTFFKAAPSIILGVLFFAGSFVCLLLPE
TLNRSLPTTIEEGEVFGKGERMFDFPCLHNKHDDEESESELEKYKRKHSL
IDAKQMQMESCSNGKRKQSLIDADHEEQALKDANHASFLDH
BO31770.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:31:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6231-PF | 585 | CG6231-PF | 1..585 | 1..585 | 3058 | 100 | Plus |
| CG6231-PE | 585 | CG6231-PE | 1..585 | 1..585 | 3058 | 100 | Plus |
| CG6231-PA | 585 | CG6231-PA | 1..585 | 1..585 | 3058 | 100 | Plus |
| CG6231-PB | 585 | CG6231-PB | 1..585 | 1..585 | 3058 | 100 | Plus |
| CG6231-PD | 585 | CG6231-PD | 1..585 | 1..585 | 3058 | 100 | Plus |
