BO31775.complete Sequence
1564 bp assembled on 2012-04-25
GenBank Submission: KX794241
> BO31775.complete
GAAGTTATCAGTCGACATGGATGCCAAGGAGTTTCGGGAATTCGGCAAGG
CCGCCATTGACTACATAGCCGACTATCTGGAGAATATTCGGGATGACGAC
GTACTGCCCAATGTGGAGCCAGGCTATCTGTTGGACCTGCTGCCCACAGA
GATGCCGGAAGAGCCCGAAGCGTGGAAGGATGTCCTCGGCGACATTAGTC
GCGTCATCAAGCCGGGACTGACCCACTGGCAGTCGCCTCACATGCATGCC
TACTACCCCACCAGCACCTCGTATCCCTCCATTGTGGGCGAGATGCTGGC
CAGCGGGTTCGGCGTCATCGGATTCAGCTGGATCTGCAGTCCCGCCTGCA
CAGAACTGGAGGTGGTGGTCATGGACTGGCTGGCCAAGTTCCTGAAGCTG
CCCGCACACTTCCAGCACGCCAGCGATGGACCAGGAGGCGGGGTGATCCA
GGGATCAGCTAGCGAGGCTGTGTTGGTGGCTGTCCTAGCTGCCAGGGAAC
AAGCTGTGGCCAACTACAGGGAATCGCATCCGGAGCTGAGCGAAAGTGAG
GTGCGTGGCCGCTTGGTGGCCTACTCCTCGGACCAGAGTAACAGCTGCAT
TGAGAAGGCTGGAGTCCTGGCTGCCATGCCGATTCGATTGCTGCCGGCTG
GAGAGGATTTCGTACTTAGAGGCGATACACTGAGAGGAGCCATCGAGGAG
GACGTGGCAGCGGGCAGGATTCCGGTGATCTGCGTTGCCACTCTGGGCAC
CACGGGCACTTGTGCCTATGACGACATTGAATCCCTGTCCGCTGTCTGCG
AGGAATTCAAGGTGTGGCTCCATGTTGATGCCGCGTATGCCGGTGGAGCC
TTTGCTCTGGAGGAATGTTCGGATTTGCGAAAGGGATTGGATCGCGTGGA
CTCGCTAAACTTCAACCTGCACAAGTTCATGCTGGTCAACTTCGATTGCT
CGGCCATGTGGCTAAGGGATGCCAACAAGGTGGTCGACAGCTTCAATGTG
GATCGCATCTACCTGAAGCACAAGCACGAGGGTCAGTCGCAAATTCCTGA
CTTCCGTCATTGGCAAATCCCCCTGGGTCGCCGCTTCCGAGCTCTAAAAG
TCTGGATCACATTCCGCACTCTGGGAGCCGAGGGATTGCGAAACCATGTG
CGCAAGCACATCGAGTTGGCCAAACAGTTTGAGCAGCTTGTGCTCAAGGA
TTCGCGATTCGAGCTGGTGGCTCCTCGTGCCCTGGGACTGGTTTGTTTCC
GGCCCAAAGGTGACAATGAGATTACCACCCAGTTGCTGCAACGGCTTATG
GATCGAAAGAAGATCTACATGGTTAAGGCCGAGCATGCGGGTCGTCAGTT
TCTGCGATTCGTCGTATGCGGCATGGACACCAAAGCCTCCGATATTGATT
TCGCCTGGCAGGAGATCGAGTCTCAACTGACGGACCTGCAGGCGGAGCAA
TCCTTGGTGGCCCGCAAATCGGGAAACGTCGGCGATCTTGCGCAGCACTT
CCAGATCCATCTGAGCACCGAAAATGCAACGCACGAGAAATCTCAGGCAA
GCTTTCTAGACCAT
BO31775.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amd-RA | 1533 | CG10501-PA | 1..1530 | 17..1546 | 7650 | 100 | Plus |
| amd-RB | 1533 | CG10501-PB | 293..1530 | 309..1546 | 6130 | 99.7 | Plus |
| Ddc-RD | 1428 | CG10697-PD | 187..397 | 203..413 | 230 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amd-RA | 1792 | CG10501-RA | 161..1690 | 17..1546 | 7650 | 100 | Plus |
| amd-RB | 1749 | CG10501-RB | 410..1647 | 309..1546 | 6130 | 99.7 | Plus |
| Ddc-RD | 2797 | CG10697-RD | 1258..1468 | 203..413 | 230 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:47:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19112793..19114008 | 331..1546 | 6080 | 100 | Plus |
| 2L | 23513712 | 2L | 19112001..19112315 | 17..331 | 1575 | 100 | Plus |
| 2L | 23513712 | 2L | 19117812..19118022 | 413..203 | 230 | 73.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:47:42 has no hits.
BO31775.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:14 Download gff for
BO31775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RA | 158..1687 | 17..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:44 Download gff for
BO31775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RA | 161..1690 | 17..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:18:30 Download gff for
BO31775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RA | 161..1690 | 17..1548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:18:30 Download gff for
BO31775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19112001..19112315 | 17..331 | 100 | -> | Plus |
| 2L | 19112794..19114008 | 332..1548 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:44 Download gff for
BO31775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19112001..19112315 | 17..331 | 100 | -> | Plus |
| arm_2L | 19112794..19114008 | 332..1548 | 99 | | Plus |
BO31775.pep Sequence
Translation from 16 to 1564
> BO31775.pep
MDAKEFREFGKAAIDYIADYLENIRDDDVLPNVEPGYLLDLLPTEMPEEP
EAWKDVLGDISRVIKPGLTHWQSPHMHAYYPTSTSYPSIVGEMLASGFGV
IGFSWICSPACTELEVVVMDWLAKFLKLPAHFQHASDGPGGGVIQGSASE
AVLVAVLAAREQAVANYRESHPELSESEVRGRLVAYSSDQSNSCIEKAGV
LAAMPIRLLPAGEDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCA
YDDIESLSAVCEEFKVWLHVDAAYAGGAFALEECSDLRKGLDRVDSLNFN
LHKFMLVNFDCSAMWLRDANKVVDSFNVDRIYLKHKHEGQSQIPDFRHWQ
IPLGRRFRALKVWITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSRFEL
VAPRALGLVCFRPKGDNEITTQLLQRLMDRKKIYMVKAEHAGRQFLRFVV
CGMDTKASDIDFAWQEIESQLTDLQAEQSLVARKSGNVGDLAQHFQIHLS
TENATHEKSQASFLDH
BO31775.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amd-PA | 510 | CG10501-PA | 1..510 | 1..510 | 2666 | 100 | Plus |
| amd-PB | 510 | CG10501-PB | 1..510 | 1..510 | 2429 | 90.4 | Plus |
| Ddc-PD | 475 | CG10697-PD | 1..475 | 1..478 | 1334 | 52.1 | Plus |
| Ddc-PB | 475 | CG10697-PB | 1..475 | 1..478 | 1334 | 52.1 | Plus |
| Ddc-PC | 510 | CG10697-PC | 36..510 | 1..478 | 1334 | 52.1 | Plus |
