BO31777.complete Sequence
2185 bp assembled on 2012-05-15
GenBank Submission: KX800003
> BO31777.complete
GAAGTTATCAGTCGACATGATCATGGAAGGGCTTGAAACCCTGGTGGCGC
CAACGCATCACGCATTCCTGCTCACCGAGACGGCCGCGGCCGCTCACTTC
AATGTGCTGAGCTTCGACACCTGTCTGTTCAAGACGAGCACGGCGGCCCA
GAGCAGCGGCAGTCCGTCGACGGCCACCTACCTGAGTCCCGCCCAATTCG
GAGGCAGTCATCACGGCGGCGCCAGCACCAGCAGCAACTCCCTGAACTCC
TCCTCGACCGCATCCTCGTCGTCCACGTCGTCCTCGCTGCTCCACTACAC
CACAGCTTCGGCAGCTGCCGCTGCTGCAGCCGCCGCTGCTGCATCCGCCA
ACAATTCAGTGCTTCGTGCCCGCAATCAGACGGCCACGCCCACCCAGGGC
GGTAGTCCGGGACACGTGGCCGTACAGCCCAGCGCCACCGCCAGCAGCGG
ACGCAGTTCGGCCTCCCATCTCAGCCTGCTGAACACCAGTGGCCAGCATA
GTCCCACCTCATCGGCCGTCGAGCAGGTGGAGGCCCACAAGCAGCTGATC
GAGGCGCTGCCGGGCGACCTCAACACACCGGTGACCACGTCCAGCGATAT
TCCCTCGTTCTTCGGACCCACCACCGTCGTGGAGCCACCGCCCATTACTG
GTTCCATCGAATCCGAGGATCTGTCTTTGGAACCCCAGGTGATATCTGTG
GCCAGTCCCGTGTTGTCACATTGCAGTCCGTTGAAGGAGGAGCGCAGCAC
TCCGCCAGCATTGGCCATTGTCAAGGAAGAATCAAGCAACGCGATGAACG
CAGCAGCTGCCGCAGCAGCCGCCGCAGCACAGCAGCAACACCAACAGCAG
CAGCAGCACCAGCAACAACTTCCCTCCCCGCAACTGGGCGTCCTGGCAGG
ACCGATGTCTCCGCCCTCAAATAGCTTGGGCAACAGCTGGGGTCTGCCCA
GTCCGGACAAGACCATGTTCCAGCCGCCCCTGTTCAGCCTGCCCGCTCAC
TATGCCACCATGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCAACAACAGCAAGCAGCAGGAGCTGCTCCCTCGCCCTACGACGATG
GACGAGCTGCAGCAGCAGCGGCGGCACAGCATGCCGAGCTCTTGGGCTTG
ACCATGGATTGCACACCTCTCTTGCTGAAACAACCGCCACCAAGTTACGC
CGGAGCCTCCGCCGGCTTCCCGGGTCTGGGTGACCTGCACAGCAGTCACG
AGCAGCAGTTGCAACAGCAACAGTATGTGCGATCACAGCCGAAATATCAA
TGGCTTGACTCACCAGCGGACTATGCCCAGCAGCAACAGCAAGTGCAGCA
GGTGCAGCAGCAGCAGCAGCAACAGCAGACTCTGGTGCTGCCAGGACCCA
CTTCATCCGCCAGTTCCAGCAATGCCGCTCTGGGCGTTTTAATACCCAAG
CAGGAGAACTATCCCGATATGCAGCCCAGCTCGAATGGCACCGGCTATTC
CGGCGGATCTGGTGGCAGTTCGGCGGCAGCTGCTGCCGCCGCTGCTGCAG
CAGCAGCAGCAGTGCAACTGGCCGAGTACAGTCCATCCACCAGCAAGGGA
CACGAGATCCTGTCGCAGGTCTATCAGCAGAGCACTGTGCCCTTGAAACT
GGTGCCCGTGAAGCCGCGCAAGTATCCCAATCGCCCCAGCAAGACGCCCG
TGCATGAGCGACCCTACGCCTGTCCGGTGGAGAACTGCGACCGTAGGTTC
TCCCGTTCCGACGAGCTCACCCGCCACATACGCATCCATACGGGCCAGAA
GCCCTTCCAGTGCCGCATCTGCATGCGCAGCTTTAGTCGCAGTGATCACC
TCACCACCCACATTCGCACCCATACCGGCGAGAAGCCCTTTAGCTGCGAC
ATTTGCGGCAGGAAGTTCGCGCGATCCGATGAGAAGAAGCGCCACGCCAA
GGTGCATCTGAAGCAGCGCATCAAGAAGGAAAAGGTGCGCGGCGAACAGC
AGCAGCAACAGCAACAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAG
CAGTTGCAGCAACAACAGGAGCAGCATCATTTGAGCCTGCAGCAACATCA
GCAGTATCAGCAGCATCACCTGCTGCACTCCGCCGATTTGGCCATAGTCA
CCTCCAGTGCGAGCATGGCAAGCTTTCTAGACCAT
BO31777.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sr-RC | 2154 | CG7847-PC | 1..2151 | 17..2167 | 10755 | 100 | Plus |
| sr-RE | 2721 | CG7847-PE | 1337..2718 | 786..2167 | 6910 | 100 | Plus |
| sr-RD | 3816 | CG7847-PD | 2177..3558 | 786..2167 | 6910 | 100 | Plus |
| sr-RE | 2721 | CG7847-PE | 1..770 | 17..786 | 3850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:17:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sr-RC | 3976 | CG7847-RC | 554..2705 | 16..2167 | 10760 | 100 | Plus |
| sr-RE | 6377 | CG7847-RE | 1891..3272 | 786..2167 | 6910 | 100 | Plus |
| sr-RD | 5757 | CG7847-RD | 3105..4486 | 786..2167 | 6910 | 100 | Plus |
| sr-RE | 6377 | CG7847-RE | 554..1324 | 16..786 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:17:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18131097..18132478 | 786..2167 | 6910 | 100 | Plus |
| 3R | 32079331 | 3R | 18127021..18127657 | 16..652 | 3185 | 100 | Plus |
| 3R | 32079331 | 3R | 18130394..18130530 | 650..786 | 685 | 100 | Plus |
| 3L | 28110227 | 3L | 3646173..3646244 | 1996..2067 | 210 | 86.1 | Plus |
Blast to na_te.dros performed 2014-11-28 11:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6888 | 1995..2127 | 403 | 78.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6909 | 1240..1421 | 240 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6515..6954 | 995..1411 | 236 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2386 | 2047..2127 | 198 | 71.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2339..2513 | 1239..1422 | 195 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2537 | 1233..1412 | 192 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2468 | 1251..1422 | 167 | 59.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 885..1011 | 2008..2126 | 136 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1547..1628 | 1239..1317 | 123 | 66.3 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..684 | 305..348 | 121 | 75 | Plus |
BO31777.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:18 Download gff for
BO31777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sr-RC | 550..2700 | 17..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:12 Download gff for
BO31777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sr-RC | 550..2700 | 17..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:39:56 Download gff for
BO31777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sr-RC | 555..2705 | 17..2169 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:39:56 Download gff for
BO31777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18127022..18127655 | 17..650 | 100 | -> | Plus |
| 3R | 18130395..18130529 | 651..785 | 100 | -> | Plus |
| 3R | 18131097..18132478 | 786..2169 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:12 Download gff for
BO31777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13952744..13953377 | 17..650 | 100 | -> | Plus |
| arm_3R | 13956117..13956251 | 651..785 | 100 | -> | Plus |
| arm_3R | 13956819..13958200 | 786..2169 | 99 | | Plus |
BO31777.pep Sequence
Translation from 16 to 2185
> BO31777.pep
MIMEGLETLVAPTHHAFLLTETAAAAHFNVLSFDTCLFKTSTAAQSSGSP
STATYLSPAQFGGSHHGGASTSSNSLNSSSTASSSSTSSSLLHYTTASAA
AAAAAAAAASANNSVLRARNQTATPTQGGSPGHVAVQPSATASSGRSSAS
HLSLLNTSGQHSPTSSAVEQVEAHKQLIEALPGDLNTPVTTSSDIPSFFG
PTTVVEPPPITGSIESEDLSLEPQVISVASPVLSHCSPLKEERSTPPALA
IVKEESSNAMNAAAAAAAAAAQQQHQQQQQHQQQLPSPQLGVLAGPMSPP
SNSLGNSWGLPSPDKTMFQPPLFSLPAHYATMQQQQQQQQQQQQQQQQQQ
AAGAAPSPYDDGRAAAAAAAQHAELLGLTMDCTPLLLKQPPPSYAGASAG
FPGLGDLHSSHEQQLQQQQYVRSQPKYQWLDSPADYAQQQQQVQQVQQQQ
QQQQTLVLPGPTSSASSSNAALGVLIPKQENYPDMQPSSNGTGYSGGSGG
SSAAAAAAAAAAAAAVQLAEYSPSTSKGHEILSQVYQQSTVPLKLVPVKP
RKYPNRPSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCR
ICMRSFSRSDHLTTHIRTHTGEKPFSCDICGRKFARSDEKKRHAKVHLKQ
RIKKEKVRGEQQQQQQQQQQQQQQQQQQQLQQQQEQHHLSLQQHQQYQQH
HLLHSADLAIVTSSASMASFLDH
BO31777.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sr-PC | 717 | CG7847-PC | 1..717 | 1..717 | 3669 | 100 | Plus |
| sr-PE | 906 | CG7847-PE | 445..906 | 256..717 | 2399 | 99.6 | Plus |
| sr-PD | 1271 | CG7847-PD | 725..1186 | 256..717 | 2399 | 99.6 | Plus |
| sr-PB | 906 | CG7847-PB | 445..906 | 256..717 | 2399 | 99.6 | Plus |
| sr-PA | 1186 | CG7847-PA | 725..1186 | 256..717 | 2399 | 99.6 | Plus |
| sr-PE | 906 | CG7847-PE | 1..557 | 1..471 | 1345 | 58.2 | Plus |
| sr-PD | 1271 | CG7847-PD | 281..837 | 1..471 | 1345 | 58.2 | Plus |
| sr-PB | 906 | CG7847-PB | 1..557 | 1..471 | 1345 | 58.2 | Plus |
