BO31792.complete Sequence
2467 bp assembled on 2012-05-15
GenBank Submission: KX797122
> BO31792.complete
GAAGTTATCAGTCGACATGGACATGCAAGTGCAGCGCCCCATTACGTCAG
GCAGCCGGCAGGCCCCGGATCCGTATGATCAGTATCTGGAGAGCCGTGGA
CTCTACCGTAAGCACACGGCCCGGGACGCCTCCAGTTTGTTCCGTGTGAT
CGCCGAGCAGATGTACGACACCCAGATGCTGCACTACGAGATTCGGCTAG
AGTGCGTCCGCTTCATGACCCTAAAACGACGCATCTTTGAGAAGGAAATT
CCTGGCGATTTCGATAGCTACATGCAGGACATGTCCAAGCCCAAGACATA
TGGAACCATGACAGAACTACGCGCTATGTCCTGCCTATATCGCCGCAATG
TTATCCTGTATGAGCCCTACAACATGGGCACCAGCGTCGTTTTTAATCGT
CGCTATGCGGAAAACTTCCGTGTCTTCTTCAACAATGAGAATCACTTTGA
TTCGGTTTATGACGTTGAATATATAGAAAGAGCCGCCATTTGTCAATCAA
TCGCCTTTAAGTTGCTGTACCAGAAGCTTTTCAAATTGCCTGACGTATCC
TTTGCTGTGGAGATTATGTTGCATCCACACACCTTCAATTGGGATCGCTT
CAATGTGGAGTTCGATGACAAGGGCTATATGGTTCGCATTCATTGCACCG
ATGGACGAGTTTTTAAGCTTGATCTGCCAGGGGACACAAACTGCATACTG
GAAAACTATAAGCTGTGCAATTTCCATAGCACCAATGGAAATCAGAGCAT
TAATGCTCGAAAGGGAGGCCGGCTGGAGATTAAAAACCAGGAGGAGCGAA
AGGCATCCGGCAGCAGTGGCCACGAACCAAACGATCTGTTGCCCATGTGT
CCAAACCGATTGGAGTCCTGTGTCCGCCAGCTGCTAGATGATGGTATCTC
TCCGTTTCCCTACAAAGTGGCCAAGTCCATGGACCCCTATATGTATCGTA
ATATAGAATTTGATTGCTGGAACGATATGCGCAAGGAGGCCAAGCTTTAT
AATGTCTACATAAATGACTATAACTTTAAGGTCCCGTATGAATCGCTCCA
TCCCCTGCCGCCAGATGAGTACCGCCCATGGTCGTTGCCATTCCGCTATC
ATCGCCAGATGCCTCGCTTGCCGTTGCCCAAGTATGCCGGTAAGGCCAAC
AAGTCTTCCAAATGGAAGAAGAACAAGCTGTTCGAAATGGACCAGTATTT
TGAGCACAGCAAGTGTGATTTGATGCCCTACATGCCCGTGGACAATTGCT
ATCAGGGTGTGCACATTCAGGACGATGAGCAGCGGGATCATAATGATCCT
GAACAAAATGACCAGAACCCGACTACGGAGCAGCGGGATCGTGAAGAACC
GCAGGCACAGAAGCAACACCAGCGCACGAAGGCATCAAGGGTTCAGCCGC
AGAACTCGAGTTCCAGCCAAAACCAGGAGGTTTCGGGTTCGGCTGCCCCG
CCACCCACTCAGTATATGAATTACGTGCCAATGATACCGAGTCGTCCTGG
GCATTTACCGCCACCTTGGCCTGCATCTCCGATGGCTATTGCCGAGGAGT
TTCCGTTCCCCATTTCAGGAACCCCGCATCCACCGCCAACCGAAGGTTGT
GTATACATGCCATTCGGTGGTTATGGTCCACCACCACCGGGAGCTGTTGC
TTTATCGGGACCGCATCCATTTATGCCGCTTCCTTCTCCACCGCTAAATG
TTACCGGAATTGGCGAGCCACGTCGTTCTCTACACCCAAACGGTGAAGAT
TTGCCCGTGGATATGGTGACTTTGAGATACTTCTACAACATGGGCGTGGA
TTTGCATTGGCGCATGTCGCACCACACGCCGCCTGATGAACTAGGAATGT
TTGGATACCATCAGCAGAACAACACTGATCAACAGGCAGGACGGACTGTA
GTCATTGGCGCCACAGAGGACAATTTGACTGCCGTGGAGTCAACACCACC
ACCTTCGCCAGAGGTGGCAAATGCCACAGAGCAGTCACCGCTTGAGAAAA
GTGCCTACGCCAAGCGCAATTTGAATTCGGTTAAGGTGCGCGGCAAACGT
CCGGAGCAGCTGCAAGATATTAAGGATTCGCTGGGGCCAGCGGCATTTTT
GCCCACTCCAACGCCATCGCCAAGCTCGAATGGCAGTCAGTTTAGTTTCT
ATACTACTCCATCGCCGCATCATCACCTGATAACACCGCCGAGGTTGCTC
CAACCGCCGCCACCGCCACCGATATTCTACCACAAGGCGGGACCACCACA
GCTAGGGGGAGCAGCTCAAGGACAGACTCCCTACGCCTGGGGCATGCCAG
CTCCGGTGGTGTCCCCCTATGAGGTGATCAACAACTATAACATGGACCCG
TCGGCTCAGCCACAACAACAGCAGCCAGCCACCTTGCAACCAGCTCCCTT
ATCTGTCCAATCTCAGCCGGCAGCTGTCTATGCTGCAACGCGTCATCACG
CAAGCTTTCTAGACCAT
BO31792.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otu-RE | 2436 | CG12743-PE | 1..2433 | 17..2449 | 12165 | 100 | Plus |
| otu-RD | 2436 | CG12743-PD | 1..2433 | 17..2449 | 12165 | 100 | Plus |
| otu-RA | 2436 | CG12743-PA | 1..2433 | 17..2449 | 12165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otu-RE | 3118 | CG12743-RE | 180..2619 | 10..2449 | 12185 | 100 | Plus |
| otu-RD | 3006 | CG12743-RD | 68..2507 | 10..2449 | 12185 | 100 | Plus |
| otu-RA | 3101 | CG12743-RA | 163..2602 | 10..2449 | 12185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:18:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8485749..8486995 | 2275..1029 | 6235 | 100 | Minus |
| X | 23542271 | X | 8487765..8488162 | 895..498 | 1990 | 100 | Minus |
| X | 23542271 | X | 8488603..8488838 | 245..10 | 1165 | 99.6 | Minus |
| X | 23542271 | X | 8485507..8485682 | 2449..2274 | 880 | 100 | Minus |
| X | 23542271 | X | 8488220..8488375 | 497..342 | 780 | 100 | Minus |
| X | 23542271 | X | 8487575..8487714 | 1032..893 | 700 | 100 | Minus |
| X | 23542271 | X | 8488444..8488543 | 342..243 | 500 | 100 | Minus |
| 2L | 23513712 | 2L | 4690352..4690441 | 212..123 | 195 | 81.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:18:14 has no hits.
BO31792.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:22 Download gff for
BO31792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otu-RA | 155..2587 | 17..2451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:21 Download gff for
BO31792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otu-RA | 170..2602 | 17..2451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:40:04 Download gff for
BO31792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otu-RA | 170..2602 | 17..2451 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:40:04 Download gff for
BO31792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8488444..8488541 | 245..342 | 100 | <- | Minus |
| X | 8488604..8488831 | 17..244 | 100 | | Minus |
| X | 8485505..8485680 | 2276..2451 | 98 | <- | Minus |
| X | 8485749..8486993 | 1031..2275 | 100 | <- | Minus |
| X | 8487577..8487713 | 894..1030 | 100 | <- | Minus |
| X | 8487767..8488162 | 498..893 | 100 | <- | Minus |
| X | 8488220..8488374 | 343..497 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:21 Download gff for
BO31792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8379538..8379713 | 2276..2451 | 98 | <- | Minus |
| arm_X | 8379782..8381026 | 1031..2275 | 100 | <- | Minus |
| arm_X | 8381610..8381746 | 894..1030 | 100 | <- | Minus |
| arm_X | 8381800..8382195 | 498..893 | 100 | <- | Minus |
| arm_X | 8382253..8382407 | 343..497 | 100 | <- | Minus |
| arm_X | 8382477..8382574 | 245..342 | 100 | <- | Minus |
| arm_X | 8382637..8382864 | 17..244 | 100 | | Minus |
BO31792.pep Sequence
Translation from 16 to 2467
> BO31792.pep
MDMQVQRPITSGSRQAPDPYDQYLESRGLYRKHTARDASSLFRVIAEQMY
DTQMLHYEIRLECVRFMTLKRRIFEKEIPGDFDSYMQDMSKPKTYGTMTE
LRAMSCLYRRNVILYEPYNMGTSVVFNRRYAENFRVFFNNENHFDSVYDV
EYIERAAICQSIAFKLLYQKLFKLPDVSFAVEIMLHPHTFNWDRFNVEFD
DKGYMVRIHCTDGRVFKLDLPGDTNCILENYKLCNFHSTNGNQSINARKG
GRLEIKNQEERKASGSSGHEPNDLLPMCPNRLESCVRQLLDDGISPFPYK
VAKSMDPYMYRNIEFDCWNDMRKEAKLYNVYINDYNFKVPYESLHPLPPD
EYRPWSLPFRYHRQMPRLPLPKYAGKANKSSKWKKNKLFEMDQYFEHSKC
DLMPYMPVDNCYQGVHIQDDEQRDHNDPEQNDQNPTTEQRDREEPQAQKQ
HQRTKASRVQPQNSSSSQNQEVSGSAAPPPTQYMNYVPMIPSRPGHLPPP
WPASPMAIAEEFPFPISGTPHPPPTEGCVYMPFGGYGPPPPGAVALSGPH
PFMPLPSPPLNVTGIGEPRRSLHPNGEDLPVDMVTLRYFYNMGVDLHWRM
SHHTPPDELGMFGYHQQNNTDQQAGRTVVIGATEDNLTAVESTPPPSPEV
ANATEQSPLEKSAYAKRNLNSVKVRGKRPEQLQDIKDSLGPAAFLPTPTP
SPSSNGSQFSFYTTPSPHHHLITPPRLLQPPPPPPIFYHKAGPPQLGGAA
QGQTPYAWGMPAPVVSPYEVINNYNMDPSAQPQQQQPATLQPAPLSVQSQ
PAAVYAATRHHASFLDH
BO31792.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otu-PE | 811 | CG12743-PE | 1..811 | 1..811 | 4448 | 100 | Plus |
| otu-PD | 811 | CG12743-PD | 1..811 | 1..811 | 4448 | 100 | Plus |
| otu-PA | 811 | CG12743-PA | 1..811 | 1..811 | 4448 | 100 | Plus |
| otu-PC | 853 | CG12743-PC | 1..853 | 1..811 | 4395 | 95.1 | Plus |
| otu-PB | 853 | CG12743-PB | 1..853 | 1..811 | 4395 | 95.1 | Plus |
