BO31807.complete Sequence
1528 bp assembled on 2012-04-25
GenBank Submission: KX797892
> BO31807.complete
GAAGTTATCAGTCGACATGATGGTGCTACAGCAACAACAACAACAGCGTC
TCTGGGATGCAACAACAACGAGCAACACAAATACACAAACACAGCAATCG
GCGAATGTGGAAAGCACGCCAACAAAAGTTTGCCATCAGGAAAATGCAGC
GACACACACATTTATGCGGCACATGTCGAACTCACCAACACCGCCCTCGC
CACTGCGTTCGCTATCAGACTGCGGAAAGAGCTTCGAGGAGGAGGAACTG
GAGCTGGGCGAGAACTGCGAGATGCCACAGAATCTGAGCAGCAAGCGCCA
GGCCAGGGAACTAGACTCTGAGCTGGAAAACGAGGTCCTGGATCTGGCAC
CGCCACCGAAGAGATTGGCCGAGGAGCAAGAGGAGGAAAAGGTGGCCAGT
GTCAATCCACCACAGCCCGTGGCATTTGCACCGGAGGAAATGCATCAGGC
TCTGCAACTGCAGTTGCACAGCTACATCGAAATGGTTCGCCAATTGGCGC
CGGAGGCGTTTCCCAATCCCAACCTGGCCACGCAGTTCCTGCTGCAGAAC
TCACTGCAAGCCTTAGCGCAGTTTCAGGCCCTGCAACAGATGAAGCAGCA
GCAAAGGGAGGATCCTCTGCCCAGTTACTCCACCCCCTTGGCCAAATCAC
CACTGAGAAGTCCATCCCTGAGTCCGGTGCCCCGGCACAGCAAATCCCAG
CAGCGAACTCCGCCAAACTCGATGACTGCCAATTCTCTGGGAATGAGTAG
TGCCGTGATGACTCCAAATACGCCCAGCATGCAGCAGCAGCCGCAACTGC
AGCAGAGCACTCCCAAGCCCACGAGTGGACTAACTGTGGCATCTGCCATG
GCCAAGCTGGAACAATCGCCGGAAGAGACCACCGATCTGGAGGAACTGGA
ACAGTTCGCCAAGACCTTCAAACAGCGGCGAATCAAGCTGGGCTTCACCC
AGGGCGATGTGGGTCTGGCCATGGGCAAACTGTATGGCAATGACTTCTCG
CAGACCACCATTTCCCGCTTCGAAGCCCTCAATCTGAGCTTCAAGAACAT
GTGCAAGCTGAAGCCGCTGCTCCAGAAATGGCTGGAGGATGCGGACAGCA
CGGTGGCCAAGTCGGGCGGTGGAGTGTTCAACATCAACACGATGACCAGC
ACGCTGAGCAGCACACCGGAAAGCATCCTGGGACGCAGACGCAAGAAGCG
CACCTCCATCGAGACCACGGTGCGCACCACGCTGGAGAAGGCCTTCCTGA
TGAACTGCAAGCCCACGTCGGAGGAGATTAGCCAGCTGTCCGAGCGCTTG
AACATGGACAAGGAGGTGATCCGGGTGTGGTTCTGCAATCGCCGTCAGAA
GGAGAAGCGCATCAATCCCTCGCTGGATCTGGACAGTCCCACGGGCACTC
CGCTGAGCAGTCATGCCTTTGGGTATCCACCGCAGGCTCTGAACATGTCC
CACATGCAAATGGAGGGCGGTTCGGGTTCCTTCTGCGGCAGTTCCATCAG
TTCAGGGGAAGCAAGCTTTCTAGACCAT
BO31807.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdm2-RA | 1497 | CG12287-PA | 1..1494 | 17..1510 | 7470 | 100 | Plus |
| pdm2-RD | 2682 | CG12287-PD | 1331..2679 | 162..1510 | 6745 | 100 | Plus |
| pdm2-RC | 2682 | CG12287-PC | 1331..2679 | 162..1510 | 6745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdm2-RA | 2171 | CG12287-RA | 194..1687 | 17..1510 | 7470 | 100 | Plus |
| pdm2-RD | 4286 | CG12287-RD | 2454..3802 | 162..1510 | 6745 | 100 | Plus |
| pdm2-RC | 3729 | CG12287-RC | 1897..3245 | 162..1510 | 6745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12684528..12685822 | 216..1510 | 6475 | 100 | Plus |
| 2L | 23513712 | 2L | 12626533..12626754 | 865..1086 | 900 | 93.7 | Plus |
| 2L | 23513712 | 2L | 12678797..12678941 | 17..161 | 725 | 100 | Plus |
| 3L | 28110227 | 3L | 6791504..6791683 | 917..1096 | 510 | 85.6 | Plus |
| 2L | 23513712 | 2L | 12626849..12627036 | 1190..1377 | 445 | 82.4 | Plus |
| 2L | 23513712 | 2L | 12680777..12680833 | 162..218 | 285 | 100 | Plus |
| 3L | 28110227 | 3L | 6791853..6791910 | 1305..1362 | 200 | 89.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:51:01 has no hits.
BO31807.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:20 Download gff for
BO31807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdm2-RA | 192..1685 | 17..1512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:03 Download gff for
BO31807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdm2-RA | 194..1687 | 17..1512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:19:45 Download gff for
BO31807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdm2-RA | 194..1687 | 17..1512 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:19:45 Download gff for
BO31807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12678797..12678941 | 17..161 | 100 | -> | Plus |
| 2L | 12680777..12680833 | 162..218 | 100 | -> | Plus |
| 2L | 12684531..12685822 | 219..1512 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:03 Download gff for
BO31807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12680777..12680833 | 162..218 | 100 | -> | Plus |
| arm_2L | 12678797..12678941 | 17..161 | 100 | -> | Plus |
| arm_2L | 12684531..12685822 | 219..1512 | 99 | | Plus |
BO31807.pep Sequence
Translation from 16 to 1528
> BO31807.pep
MMVLQQQQQQRLWDATTTSNTNTQTQQSANVESTPTKVCHQENAATHTFM
RHMSNSPTPPSPLRSLSDCGKSFEEEELELGENCEMPQNLSSKRQARELD
SELENEVLDLAPPPKRLAEEQEEEKVASVNPPQPVAFAPEEMHQALQLQL
HSYIEMVRQLAPEAFPNPNLATQFLLQNSLQALAQFQALQQMKQQQREDP
LPSYSTPLAKSPLRSPSLSPVPRHSKSQQRTPPNSMTANSLGMSSAVMTP
NTPSMQQQPQLQQSTPKPTSGLTVASAMAKLEQSPEETTDLEELEQFAKT
FKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKP
LLQKWLEDADSTVAKSGGGVFNINTMTSTLSSTPESILGRRRKKRTSIET
TVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEKRIN
PSLDLDSPTGTPLSSHAFGYPPQALNMSHMQMEGGSGSFCGSSISSGEAS
FLDH
BO31807.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdm2-PA | 498 | CG12287-PA | 1..498 | 1..498 | 2556 | 100 | Plus |
| pdm2-PD | 893 | CG12287-PD | 445..893 | 50..498 | 2299 | 100 | Plus |
| pdm2-PC | 893 | CG12287-PC | 445..893 | 50..498 | 2299 | 100 | Plus |
| pdm2-PB | 893 | CG12287-PB | 445..893 | 50..498 | 2299 | 100 | Plus |
| nub-PE | 601 | CG34395-PE | 119..590 | 6..460 | 879 | 46.4 | Plus |
