BO31827.complete Sequence
3190 bp assembled on 2012-05-15
GenBank Submission: KX794291
> BO31827.complete
GAAGTTATCAGTCGACATGGAGACCCCGACGGGTAGTGGGCGTCCCAGTC
GCATGGCCACTCCGCGCCTTTCGGAGCGCAAGCGGCAACTGTTTGGCAGT
CCCAGATCCAGGCTGCGCCAAATCAACGACGACGAGGATGATGCGGACGT
AGACAGTCTGGGTGTCTTGCCATTAAAGACCCATGTGGCGGCCAACAGGA
AGGGCAGGAGTCTCTTCGCCGCAGTCCCCGGCAAGTCAAGCAGCAGTGCG
AACAGCAGCCCGGAAACCAACAAGGAGAACAAAAAAACCCGTGGCGGAGT
CATGACTGCCACGGCGGAGCAGCTGCCCCAATTGTTTACAGCCACCATGC
GGCTAAATAGCAACAGCAGCAGCAATAGTCGCAACAGCAGCCCCCGTCAG
ACGAGGGTCCAAAGAAAGCGAGCGGATTCTTCAATGTCGTCGCCCACCTC
TTCCTCTGAAGGAACTCCTTCTTCCAGAGCCAGAAATAGCATCAGACGCA
GTCCACGAACCTTCAGTGCGCAAAAGGATCCAGATGCGTTCTCCTCGCCA
GAATCTTTTCAGACTAGGCTAAGCAAGGTGGCAGCTATGCTAATGAAGGG
TCAGGATTCAAGATCAATGTTAGAAAAATCAAAGAAGAAACACAACCACA
GCCTAAAGACCACTGCCCAAGTGCATACAACTAAACCGAAGAAAACGAGC
CCAGCTGAAGAGTCCCAGTCGGACGACGAGAAACCTTCTAGCAGTAAGAA
CTCCAGGAAGAATACAGAAGTTCGTGAAACAAGGAGCTCGCAAATCATCA
GTCCAAAAACCAGGAATAGGCGAAGACCCTTCACGTCGGCGGATATAAAC
TGCAAGACGCTGAAGGCTGCTGCCCATCTACATGAGAACATGAGGTCGTA
TGATGAAGAAAAAACAGCAGCAGTTAAGCTAGAAAACAGCAGAAGCAGAT
CCAAGTCCCCGGTAGAAGTGTTCAAGTCAAATGACGATGCAGTAAAACGA
AACACAGGAAACACCAACAATAAAACAGCGAAATCTTCCGAAGTTGCCAC
AGCAAAAAGGCCAGAAAGCCCAGGAAGTAGTATGAAGATTGATGTCGAAG
TGCCCGAATCGGACGAAGAAGCATCCAATCATAAGCCTCAAAAGCGACAG
CACCCAGAAACGTCCACCCCGGTTGCTCCTTCAGCGGACGCCGACTCTGG
TTCGCCGCAGAGCAAGATGCGCAAGGTGACGCTGAGCAGCAGCATTCCCA
CCATGGCCTTCTATTCCCACAGTGGAGAAGCGGTCACAAAGTCAAGAAGG
CGGCCGTCCATATCCAAGAATTCGCTTAAACAACCAACGAAAATCTCGCC
AACCTCCCGTCCACTATTGGGCATTAATAAGGGAGTTCACCACAAAATAC
GCAAGCGTCACGGTTTTGCCAACCGACTGCCAGCCACCGATATGGACAAC
ATTCTCAACTCGCTGAGCAACGAACGGCTCAAGAACCTGATCACCACCAA
GCGTGAAGAGCGCGCCAAAGTGGAGGAAGTCCACCAGATTCTCCGTAATG
CCAAGGACCCGATCAAAATGGCCAAACCATTGAGTGTGATTGAAGCCGAC
GATGCTAACAACAATAACAATCTGCCAGCAACCGCATGGCAAGAAACTTC
CGCCGATTTCTCCGATCTTAGTGATGTCGAAGACATTGATCCCATCATCG
AGGTGGAGCCTATCATACCAATAATTCGCCACGAGCCGGTCCAGAAATCC
CCAACCGCCGAGCCAGCCGATCTAAGCAAACGAAAGTTCTTCAAATCGGG
CCGCCGTAGTAGCACCTGCATGGAGGTGAGAATCACGGACAACATCCGGG
CCAGCGTCAGCCAGGGCAAGATTGAACTCGTCCAAACGATACGCCGTAAG
CCGCGGCAAGTGCGCGTCAAGTCGGCCACGATATTTTCCGCCGAGCAGGC
GACTGTGGATGCGATCCTAAAGAATCTGGACGATACGGTGGTTGATGAGA
TTGTAGAAGCGAATCCGGTGGTACAGGCAACGCCCATTGATGCGGAGGAG
ACGACCATGGAAACGGAGTCGCTACCGGATATAATTGAGTATGCCCCAGA
GGCGAACGATGTGGAAATTGATCCCTTTGCTGAGTTCCGTCAACGTTTGC
CATACCAAACCGATGATCCCAATGTCGTGGAGCAACAGCAAATTTTACTA
GAGTTTCTCATTAGCAACAATATTTGCACCGAAAAGAACTTTGAGATATT
TATTGCAAATCCGGATGACTACAAGGACGAGGCCAATCAAATTGTGGACA
ATTTATACATGGTGGTGAACAGCGAGGAGGCTGCGCAGCTTGCTCAGATG
GAAACAGTGGAAAATACAGCGGTGGCCATTGCACCAAAACAGGATGCGCC
AGCAGTAGAGGAAGTTCAGCCAAAGCTTTTCCCCATATTCACTCAACGCT
TACAGCCCGTTGTCCAGAAATCGTTGCGGCGTCGGCCGGATACATCGATG
AGATTGCTAACGGCGGCGGGTGGATCGAATCAGTACCAGATCGATGCTGG
TCAAAAGGCCTTCGGAGCACGGCAGTGCCAGCAGTGCGGATTGGTGTACA
CCGTGCACGAGCCGGAGGAGGAGCTGCTTCATCGCGAGTACCACAATTCC
ATCCATGTGCTGCGCTTCAAGGGCTGGATCGACGAGGACATTGTGTCCGT
TTATCCAGAATGGGCCAGCGACGGGCGCATCATACGGATCAACGAACGCG
CTCCGACAGCTCGGCTCGACAGACTGCGGGATCTCATTGGTGTGGTGGAC
AAAGAGCTGGGCTATTCCTCGTACATTGTGCCAAAGATCTTTGTAGCCTT
CATAGCAGTGCGCAAGCAGCAGATCGTAGGCTTCTGCCTGGTGCAGCCCC
TCTCGCAGGCCCATCGTTTCATCCAGGTCGATGGCACGGACTACTTCAGC
GAGGAAAGCTACCCGGCCAGCTGCGGCGTCTCACGCATCTGGGTTTCTCC
GCTGCAGCGACGCAGCGGGATCGCCAGCAAGCTGCTGCGAGTCGTCCAGT
GCCACACGGTGCTCGGTCAAGAGATCGCTAGGGAGTGCATTGCCTTCAGT
ACGCCCACCGACGATGGTCGGGCTCTGGCACGCCAGTTCACCGGGTTGGA
TAACTTCCTCACCTACGACCAGGCAAGCTTTCTAGACCAT
BO31827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eco-RB | 3159 | CG8598-PB | 1..3156 | 17..3172 | 15780 | 100 | Plus |
eco-RA | 3159 | CG8598-PA | 1..3156 | 17..3172 | 15780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eco-RB | 3485 | CG8598-RB | 97..3253 | 16..3172 | 15785 | 100 | Plus |
eco-RA | 3654 | CG8598-RA | 266..3422 | 16..3172 | 15785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7335938..7338892 | 2970..16 | 14775 | 100 | Minus |
3L | 28110227 | 3L | 7335674..7335878 | 3172..2968 | 1025 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 11:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1107..1142 | 356..391 | 135 | 86.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2373 | 356..391 | 126 | 83.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1529..1588 | 338..395 | 123 | 71.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1094..1130 | 355..391 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6761 | 359..391 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6782 | 359..391 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6803 | 359..391 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6804..6836 | 359..391 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6824 | 280..391 | 116 | 62.6 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 886..1005 | 268..391 | 116 | 56.5 | Plus |
BO31827.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:23 Download gff for
BO31827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eco-RB | 98..3253 | 17..3174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:23 Download gff for
BO31827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eco-RA | 267..3422 | 17..3174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:40:05 Download gff for
BO31827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eco-RA | 267..3422 | 17..3174 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:40:05 Download gff for
BO31827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7335671..7335875 | 2971..3174 | 99 | <- | Minus |
3L | 7335938..7338891 | 17..2970 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:23 Download gff for
BO31827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7329038..7331991 | 17..2970 | 100 | | Minus |
arm_3L | 7328771..7328975 | 2971..3174 | 99 | <- | Minus |
BO31827.pep Sequence
Translation from 16 to 3190
> BO31827.pep
METPTGSGRPSRMATPRLSERKRQLFGSPRSRLRQINDDEDDADVDSLGV
LPLKTHVAANRKGRSLFAAVPGKSSSSANSSPETNKENKKTRGGVMTATA
EQLPQLFTATMRLNSNSSSNSRNSSPRQTRVQRKRADSSMSSPTSSSEGT
PSSRARNSIRRSPRTFSAQKDPDAFSSPESFQTRLSKVAAMLMKGQDSRS
MLEKSKKKHNHSLKTTAQVHTTKPKKTSPAEESQSDDEKPSSSKNSRKNT
EVRETRSSQIISPKTRNRRRPFTSADINCKTLKAAAHLHENMRSYDEEKT
AAVKLENSRSRSKSPVEVFKSNDDAVKRNTGNTNNKTAKSSEVATAKRPE
SPGSSMKIDVEVPESDEEASNHKPQKRQHPETSTPVAPSADADSGSPQSK
MRKVTLSSSIPTMAFYSHSGEAVTKSRRRPSISKNSLKQPTKISPTSRPL
LGINKGVHHKIRKRHGFANRLPATDMDNILNSLSNERLKNLITTKREERA
KVEEVHQILRNAKDPIKMAKPLSVIEADDANNNNNLPATAWQETSADFSD
LSDVEDIDPIIEVEPIIPIIRHEPVQKSPTAEPADLSKRKFFKSGRRSST
CMEVRITDNIRASVSQGKIELVQTIRRKPRQVRVKSATIFSAEQATVDAI
LKNLDDTVVDEIVEANPVVQATPIDAEETTMETESLPDIIEYAPEANDVE
IDPFAEFRQRLPYQTDDPNVVEQQQILLEFLISNNICTEKNFEIFIANPD
DYKDEANQIVDNLYMVVNSEEAAQLAQMETVENTAVAIAPKQDAPAVEEV
QPKLFPIFTQRLQPVVQKSLRRRPDTSMRLLTAAGGSNQYQIDAGQKAFG
ARQCQQCGLVYTVHEPEEELLHREYHNSIHVLRFKGWIDEDIVSVYPEWA
SDGRIIRINERAPTARLDRLRDLIGVVDKELGYSSYIVPKIFVAFIAVRK
QQIVGFCLVQPLSQAHRFIQVDGTDYFSEESYPASCGVSRIWVSPLQRRS
GIASKLLRVVQCHTVLGQEIARECIAFSTPTDDGRALARQFTGLDNFLTY
DQASFLDH
BO31827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eco-PB | 1052 | CG8598-PB | 1..1052 | 1..1052 | 5334 | 100 | Plus |
eco-PA | 1052 | CG8598-PA | 1..1052 | 1..1052 | 5334 | 100 | Plus |
CG14692-PE | 2851 | CG14692-PE | 1008..1523 | 70..594 | 168 | 20.4 | Plus |
futsch-PF | 5495 | CG34387-PF | 3414..4058 | 76..688 | 165 | 19.6 | Plus |
futsch-PE | 5495 | CG34387-PE | 3414..4058 | 76..688 | 165 | 19.6 | Plus |