Clone BO31833 Report

Search the DGRC for BO31833

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:318
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG2774-RA
Protein status:BO31833.pep: Imported from assembly
Sequenced Size:1408

Clone Sequence Records

BO31833.complete Sequence

1408 bp assembled on 2012-04-25

GenBank Submission: KX798352

> BO31833.complete
GAAGTTATCAGTCGACATGGAGGTGGAAAGCCCGGAACACACGCGCGACT
TCGCCGAGGTAGACATCAATAACGGTGCGGCCACAGGATCGGAAGACGAG
GAGGAGGAGGTGCCAGCGCCCGGCAGCGTAACTCTGGATCGCAACGAAAG
TGATCTCTTCGTGTCGGCCTTGAGTCCCAGCAGCATCGGGGATATACACC
CGCTGCAGGAAGTGCTCACCGACGACGGCGACTACTTCATCAGCATCGTG
GTCTCGGATCCGCAGAAAATCGGCGATGGCATGGGCTCCTATTTGGCCTA
CAAGGTAACGACCAAAACGAACATTCCCAAATTCAAGCGTAGCGAGTTCA
GTACTCTGCGCCGCTTCAGCGATTTCCTTGGCATCCATGATCTGCTTGTG
GGCAAGTACATGCGGCTGGGCCGCATCATACCGCCGGCGCCCTCCAAGAA
CATCATAGGCAGCACCAAGGTGAAGATTAGCCCGCAGCAAAGCGAACCGG
GCACGCCCATGACCCAGGAATGGGTGGAGATCCGCCGGGCGGCCCTCGAG
CGATTCGTCCACCGTACCGCCCAGCATCCGGTGCTGCGCGTCGATCTGGA
TTTCATGAACTTCCTGGAGAGCGACCAGGAGCTGCCGCGTTCAGTGAATA
CCTCTGCGCTCAGTGGAGCCGGCGTCATCCGCCTGTTTAACAAAGTTGGC
GAAACTGTGAACAAGATTACCTACAAAATGGACGAGAACGATCCGTGGTT
CGACGACAAGATCACCGAGGTGGAGAGCCTGGACGCCAATCTGCAGAAGC
TGCACAATGCCATGAAATCGCTGGTCACGTCGCGTCGTGAGCTGTCGCTG
CTCACCGGCTTGGTGGCCAAGTCGGCGGCCATGCTGAGCACTTGCGAGGA
GCACACAGGCCTCTCCAGAGCGCTGTCCAACCTGGCGGACGTGGAGGAGA
AGATAGAGCTACTGCGCTCCGAGCAGGCCAATTCGGACTTCTTCATTCTG
GCCGAGTTTATCAAGGATTACCTGGGCCTGTTTGGCGCCATCAAGTGCAT
TTTTCATGAGCGCGTCAAGGCTTTCCAGAACTGGCAGTACGCACAAATGC
AGTTGTCCAAGCGGCGTGAGAACCGTGGACGCTTCGAGCTAGCCAATAGG
GCGGACAAGCTGGATCAGGCCCAGCAGGAAGTGGACGAGTGGCAGGGAAA
GGTTCAGCGCTGTCAGCAGCAGTTCGACGACATTTCGGCGGAAATTAAGC
GTGAGATGGAGCGTTTCGAATTGACCAGAGTTAAAGACTTTAAAGTAAAC
ATTATCAAGTATATAGAAGACCAAATGGCGCATCAGCAACAGATCGTCAG
CTATTGGGAGGCCTTTGCTCCGTTTGCCCGCGAAATCGTTGCAAGCTTTC
TAGACCAT

BO31833.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Snx1-RA 1377 CG2774-PA 1..1374 17..1390 6870 100 Plus
Snx1-RB 1371 CG2774-PB 1..1368 17..1390 6745 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
Snx1-RA 2028 CG2774-RA 113..1486 17..1390 6870 100 Plus
Snx1-RB 2022 CG2774-RB 113..1480 17..1390 6745 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3450358..3451243 304..1189 4430 100 Plus
2L 23513712 2L 3449795..3449977 17..199 915 100 Plus
2L 23513712 2L 3451299..3451453 1188..1342 775 100 Plus
2L 23513712 2L 3450185..3450289 200..304 525 100 Plus
2L 23513712 2L 3451514..3451564 1340..1390 255 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:35:48 has no hits.

BO31833.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:21 Download gff for BO31833.complete
Subject Subject Range Query Range Percent Splice Strand
CG2774-RA 110..1483 17..1392 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:06 Download gff for BO31833.complete
Subject Subject Range Query Range Percent Splice Strand
Snx1-RA 113..1486 17..1392 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:59:51 Download gff for BO31833.complete
Subject Subject Range Query Range Percent Splice Strand
Snx1-RA 113..1486 17..1392 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 08:59:51 Download gff for BO31833.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3449795..3449977 17..199 100 -> Plus
2L 3450185..3450288 200..303 100 -> Plus
2L 3450358..3451243 304..1189 100 -> Plus
2L 3451301..3451453 1190..1342 100 -> Plus
2L 3451517..3451564 1343..1392 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:06 Download gff for BO31833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3449795..3449977 17..199 100 -> Plus
arm_2L 3450185..3450288 200..303 100 -> Plus
arm_2L 3450358..3451243 304..1189 100 -> Plus
arm_2L 3451301..3451453 1190..1342 100 -> Plus
arm_2L 3451517..3451564 1343..1392 96   Plus

BO31833.pep Sequence

Translation from 16 to 1408

> BO31833.pep
MEVESPEHTRDFAEVDINNGAATGSEDEEEEVPAPGSVTLDRNESDLFVS
ALSPSSIGDIHPLQEVLTDDGDYFISIVVSDPQKIGDGMGSYLAYKVTTK
TNIPKFKRSEFSTLRRFSDFLGIHDLLVGKYMRLGRIIPPAPSKNIIGST
KVKISPQQSEPGTPMTQEWVEIRRAALERFVHRTAQHPVLRVDLDFMNFL
ESDQELPRSVNTSALSGAGVIRLFNKVGETVNKITYKMDENDPWFDDKIT
EVESLDANLQKLHNAMKSLVTSRRELSLLTGLVAKSAAMLSTCEEHTGLS
RALSNLADVEEKIELLRSEQANSDFFILAEFIKDYLGLFGAIKCIFHERV
KAFQNWQYAQMQLSKRRENRGRFELANRADKLDQAQQEVDEWQGKVQRCQ
QQFDDISAEIKREMERFELTRVKDFKVNIIKYIEDQMAHQQQIVSYWEAF
APFAREIVASFLDH

BO31833.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
Snx1-PA 458 CG2774-PA 1..458 1..458 2341 100 Plus
Snx1-PB 456 CG2774-PB 1..456 1..458 2312 99.6 Plus
Snx6-PB 455 CG8282-PB 35..443 33..446 231 21.4 Plus
Snx6-PA 449 CG8282-PA 35..437 33..446 222 21 Plus