BO31874.complete Sequence
2044 bp assembled on 2012-05-15
GenBank Submission: KX799180
> BO31874.complete
GAAGTTATCAGTCGACATGCATCTGAGGATCCGTCTCACGTGTCGCAAAT
ATGAAATTTGGGCTCTGTCCATCTTCTCCCTGGTCACTGGTCTTTATGTC
CTGCACTTCTCCATAGCTCTGATCCTGGTCAACAAAGAGGTGCCCCAAAC
GCGCGGAATGCTGTACCCCAGGGAATCGGAGACGCGGGAGGTGCGATCTC
TGGACGGGATCTGGAACTTTGTGCGCTCCGACCAGGCGAATCCCACGCAG
GGCGTCCGGGATGAGTGGTATGCCAAGGAGTTGAGCAAGAGCAGGCCCAC
AATACCCATGCCGGTGCCGGCATCCTATAATGACATAACCACGGACAATT
TGAGGGATCACGTGGGCACAGTGTGGTACGACCGCAAGTTCTTTGTGCCC
CGATCGTGGTCAAAGGATCAGAGGATATGGCTGCGATTCGGCAGTGTTCA
CTATGAGGCATATGTGTGGATCAACGGCCAGAAGGTGGTGAAGCATGAAA
TGGGTCACCTACCCTTCGAGGCGGAGGTCACCGATCTTCTGAGCTATGGA
GCCGAGAATCGGATCACCGTTATGTGCGACAATGCTCTGATTCAGACAAC
TGTGCCGCAGGGCAGGATTACGGAAGTGCCCAACGATGGTGGCATGACCA
TTGTGCAGAGCTACACCTTTGACTTCTTTAACTATGCGGGAATCCACAGG
AGCGTGCATCTTTACACCACGCCCCGTACTTTTATCGAGGAGGTTGAGGT
CACCACAAACCTTTCAAAGGATGCCACCGTTGGCGAAGTGTTCTATAGCG
TAAGCGTGAATGGCAGCGCTGCCAACGAGGCAGATAATGTCTTGCAAATC
CAGGCCAATTTGTACGATAAGGATGGCATATTGGTGGCGAATGCCACGTC
GGACCAAAAACTTGGCGGCAAGCTGCAAGTGAACCCGGTGAAGCCCTGGT
GGCCCTACCTAATGCATTCCGAACCGGGTTATCTGTACCAGCTGGAGATC
AAATTGCTGGCGACCAACGATGAGCTCCTGGATGTCTACCGACTGAAAGT
GGGAATACGCACACTAAGTTGGAACAGCCAGCAGTTCCTGATCAACGGCA
AGCCCGTTTACTTCCGTGGTTTTGGACGACACGAAGATTCGGATATCAGG
GGTAAGGGTCTGGACAATGCACTGATGGTGCGCGATTTCAATCTGCTCAA
GTGGATTGGAGCGAATGCGTATCGCACGTCGCATTATCCCTACTCCGAGG
AGTCCATGCAGTTTGCGGATGAGCACGGCATCATGATCATCGACGAATGT
CCCAGTGTGGATACAGAAAACTTTAGCCAGGAGCTGCTGGGCAAGCACAA
ATCGTCGCTGGAGCAGCTCATCCATCGGGATCGGAATCATCCAAGTGTGG
TGATGTGGTCCATTGCCAATGAACCCCGGACTGGTAGCGTGAGTGCGGAT
TCGTACTTTGAATTAGTGGCCAACTTCACACGGTCTCTGGATAAAACCCG
ACCCATCACGGCTGCCATTGCTGTTTCAAACACCCAGGATAAGGCGGGCC
GCTCTCTGGACATCATCAGCTTCAATCGCTACAATGCCTGGTACTCAAAT
GCCGGACGTCTGGACATGATAACCCAGAATGTGATCGACGAGGCCATTGC
CTGGAATAAACGCTACAACAAACCCATTATCATGTCTGAATATGGAGCAG
ATACCTTGGAGGGCTTGCATATGCAACCTGCTTATGTGTGGTCGGAGGAG
TTCCAGACGGAGGTGTTTTCCCGCCATTTTAAGGCCTTCGATGAGCTGCG
CAAGAAGGGCTGGTTCATTGGCGAGTTTGTATGGAACTTTGCGGACTTTA
AGACAGCACAAAGCTACACCCGCGTGGGAGGCAATAAAAAGGGTGTTTTC
ACCCGCGCGCGCCAACCCAAAGCGGCAGCTCATCTCCTTCGCAAAAGATA
CTTTGCATTGGGCAGAGATTTGGACCAGTGCAGCTTCCCGGAAGATCTCT
TCACCTACATCGCCGATCTGATATCCGCAAGCTTTCTAGACCAT
BO31874.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15117-RB | 2013 | CG15117-PB | 1..2010 | 17..2026 | 10050 | 100 | Plus |
| CG15117-RA | 1971 | CG15117-PA | 3..1968 | 61..2026 | 9830 | 100 | Plus |
| CG15117-RC | 1971 | CG15117-PC | 5..1968 | 63..2026 | 9820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15117-RB | 2338 | CG15117-RB | 108..2119 | 15..2026 | 10060 | 100 | Plus |
| CG15117-RA | 2487 | CG15117-RA | 303..2268 | 61..2026 | 9830 | 100 | Plus |
| CG15117-RE | 2380 | CG15117-RE | 197..2161 | 62..2026 | 9825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:18:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19123499..19124037 | 1317..779 | 2695 | 100 | Minus |
| 2R | 25286936 | 2R | 19124537..19124941 | 466..62 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 19124105..19124418 | 779..466 | 1570 | 100 | Minus |
| 2R | 25286936 | 2R | 19122910..19123087 | 1723..1546 | 890 | 100 | Minus |
| 2R | 25286936 | 2R | 19122450..19122613 | 2026..1863 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 19123295..19123438 | 1461..1318 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 19122671..19122811 | 1863..1723 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 19123147..19123232 | 1547..1462 | 430 | 100 | Minus |
| 3R | 32079331 | 3R | 31770281..31770495 | 1398..1184 | 340 | 77.2 | Minus |
| 2R | 25286936 | 2R | 19127470..19127517 | 62..15 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:18:55 has no hits.
BO31874.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:27 Download gff for
BO31874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15117-RB | 108..2117 | 17..2028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:33 Download gff for
BO31874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15117-RB | 110..2119 | 17..2028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:40:17 Download gff for
BO31874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15117-RB | 110..2119 | 17..2028 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:40:17 Download gff for
BO31874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19123295..19123438 | 1318..1461 | 100 | <- | Minus |
| 2R | 19122672..19122810 | 1724..1862 | 100 | <- | Minus |
| 2R | 19122910..19123086 | 1547..1723 | 100 | <- | Minus |
| 2R | 19123148..19123232 | 1462..1546 | 100 | <- | Minus |
| 2R | 19122448..19122613 | 1863..2028 | 98 | <- | Minus |
| 2R | 19123499..19124036 | 780..1317 | 100 | <- | Minus |
| 2R | 19124105..19124417 | 467..779 | 100 | <- | Minus |
| 2R | 19124537..19124940 | 63..466 | 100 | <- | Minus |
| 2R | 19127470..19127515 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:33 Download gff for
BO31874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15010800..15010943 | 1318..1461 | 100 | <- | Minus |
| arm_2R | 15009953..15010118 | 1863..2028 | 98 | <- | Minus |
| arm_2R | 15010177..15010315 | 1724..1862 | 100 | <- | Minus |
| arm_2R | 15010415..15010591 | 1547..1723 | 100 | <- | Minus |
| arm_2R | 15010653..15010737 | 1462..1546 | 100 | <- | Minus |
| arm_2R | 15011004..15011541 | 780..1317 | 100 | <- | Minus |
| arm_2R | 15011610..15011922 | 467..779 | 100 | <- | Minus |
| arm_2R | 15012042..15012445 | 63..466 | 100 | <- | Minus |
| arm_2R | 15014975..15015020 | 17..62 | 100 | | Minus |
BO31874.pep Sequence
Translation from 16 to 2044
> BO31874.pep
MHLRIRLTCRKYEIWALSIFSLVTGLYVLHFSIALILVNKEVPQTRGMLY
PRESETREVRSLDGIWNFVRSDQANPTQGVRDEWYAKELSKSRPTIPMPV
PASYNDITTDNLRDHVGTVWYDRKFFVPRSWSKDQRIWLRFGSVHYEAYV
WINGQKVVKHEMGHLPFEAEVTDLLSYGAENRITVMCDNALIQTTVPQGR
ITEVPNDGGMTIVQSYTFDFFNYAGIHRSVHLYTTPRTFIEEVEVTTNLS
KDATVGEVFYSVSVNGSAANEADNVLQIQANLYDKDGILVANATSDQKLG
GKLQVNPVKPWWPYLMHSEPGYLYQLEIKLLATNDELLDVYRLKVGIRTL
SWNSQQFLINGKPVYFRGFGRHEDSDIRGKGLDNALMVRDFNLLKWIGAN
AYRTSHYPYSEESMQFADEHGIMIIDECPSVDTENFSQELLGKHKSSLEQ
LIHRDRNHPSVVMWSIANEPRTGSVSADSYFELVANFTRSLDKTRPITAA
IAVSNTQDKAGRSLDIISFNRYNAWYSNAGRLDMITQNVIDEAIAWNKRY
NKPIIMSEYGADTLEGLHMQPAYVWSEEFQTEVFSRHFKAFDELRKKGWF
IGEFVWNFADFKTAQSYTRVGGNKKGVFTRARQPKAAAHLLRKRYFALGR
DLDQCSFPEDLFTYIADLISASFLDH
BO31874.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15117-PB | 670 | CG15117-PB | 1..670 | 1..670 | 3551 | 100 | Plus |
| CG15117-PA | 656 | CG15117-PA | 2..656 | 16..670 | 3465 | 100 | Plus |
| CG15117-PC | 656 | CG15117-PC | 2..656 | 16..670 | 3462 | 99.8 | Plus |
| CG15117-PD | 648 | CG15117-PD | 3..648 | 23..670 | 3378 | 98.6 | Plus |
| CG15117-PF | 623 | CG15117-PF | 1..623 | 48..670 | 3311 | 100 | Plus |
