BO31884.complete Sequence
1573 bp assembled on 2012-05-15
GenBank Submission: KX794813
> BO31884.complete
GAAGTTATCAGTCGACATGTTCTCCTCCAGCGCCTCGGCCGCGTCCACAT
CCTTCAATCTCGGCCAGCTGCTGCCATTGGCCATCGCCATCGGAGTGTTG
CATCTGCCGCAGTTTCTGTGTCATGCTGCCTGGACAACCAGAACGCCGGA
AAGTTTCATTAACGATACGACCACCACCACCACCACCACCACCACCACCA
CAACCAAGACCATGCAAATCCAGGCGATGCAGGTGAACTGCAGCCGGGAG
CTGCTCGAGATGCATCTGGAGTTGAGCCGTCCCTTTCGCGGATTACTCTA
CGCCAAGGACTTTCCGCTGGAGTGTCGCGCACGTGGCAAGGACTCGACGC
GTCTGCATCTGCGCATCCCAACATCGGGTTGCGGAGTGAGGGCAGAGCCA
CTGGAGGACGGCAGTCTGGAGTATACGGTGCGTGTGATGCTGCAAAAGGA
GCAGAAGTTGCGCCAGAGCACCGACATCCTTAGCTCGGTGAGATGCCAAC
TTCCGGCCAATGCGATGGGCATGCCACTTCCGGTGTTGCGACAGGAAAAG
GGTCACGATAGAAATGCCAGGATGCGAGCCTTGGCAGCTGCTGCTGCAGT
TCCAGCTCTCGGCGCCACTTCGTCCATCAATCAACAGCAGCGGGAGACGC
CACGCGTTAGGATCTGGTTAGAATTGGGCGGTCCCAATGGCACCGGATCC
GTGGAGGTGGGCGTCGCCACCACGCTGACGGTGAGAGCCATCGTGCCCGG
AAACATCGGAGTGCGGGTGGTGGACTGTGCGGCACTCGATGGACTGGGCG
AATCCACGCAGCAATTACTCGATGCCCGCGGCTGTCCCATCGACGAGCAG
GTAATGCCCGCTCTGCACACCCAGCACCGACCGGCGGAGGAGGGTTGGTC
CAAGCAGCACGAGGAAGACCTGGTCGAGCGGACGTTCGCGGCCACGTTTC
CCGCCTTCAAGTTCCCGGACCGCGAGCGCCTACACGTCAGCTGTGGCGTG
CAACTTTGCAAGGGGAAGTGTCCGACTCTAAATTGTCGCCTAAAGACGCC
TCCGCCGGCGTTGAGCGCCGAGCAGCATCTGGCACGCATCGAGGTTTTCA
ATTCGCTGGCCGTGACAGCACCCCAAATCGAGGTGGACCGCCTGCGCTAC
GATAGGCGGCACAACATGAGCGGCGAGGATTATGCGCCGCATGTGAGGGG
TCAAGTGATGCCCGGCGAGGGAACGCTCTGTCTGTCCATCTCCAAGCTGG
CCATCTCGTTCTGCGTTCTGGGCCTGATCTTTCTGGTGGCCGTGGTGGTG
GCCATCTTTTCGCTGATTCGATCGCGTCGCCGGGAGCGTCGTCATGGAGC
TGGCTTGAGTCTGGGTCTGGGAGTAGGACTGGGCATCGCCGGGACGAGCA
CGTCGAACAGCAGCAGTCGATTGCATCGGGATCGGGCCGAGATTTGCACC
TCGATGTTCTCATCCAGCAGCGAATCGGCGCAATCGCAGCCGCGTTTCGG
GGCCAAGTTCCTGATGCCCTACTATCCGAATACCCTGCCCTATGGCCGTG
TCTACGCAAGCTTTCTAGACCAT
BO31884.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cyr-RC | 1542 | CG15335-PC | 1..1539 | 17..1555 | 7695 | 100 | Plus |
| cyr-RB | 1542 | CG15335-PB | 1..1539 | 17..1555 | 7695 | 100 | Plus |
| cyr-RD | 1365 | CG15335-PD | 1..838 | 17..854 | 4175 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cyr-RC | 2555 | CG15335-RC | 648..2188 | 15..1555 | 7705 | 100 | Plus |
| cyr-RB | 2452 | CG15335-RB | 545..2085 | 15..1555 | 7705 | 100 | Plus |
| cyr-RD | 2378 | CG15335-RD | 648..1487 | 15..854 | 4185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8127061..8127607 | 561..15 | 2735 | 100 | Minus |
| X | 23542271 | X | 8121647..8122030 | 1555..1172 | 1920 | 100 | Minus |
| X | 23542271 | X | 8126688..8126981 | 852..559 | 1470 | 100 | Minus |
| X | 23542271 | X | 8123192..8123371 | 1027..848 | 900 | 100 | Minus |
| X | 23542271 | X | 8122369..8122514 | 1173..1028 | 730 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 4815..4900 | 1367..1281 | 117 | 64 | Minus |
BO31884.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:35:49 Download gff for
BO31884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyr-RB | 552..2085 | 22..1557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:56 Download gff for
BO31884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyr-RB | 552..2085 | 22..1557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:34 Download gff for
BO31884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyr-RB | 552..2085 | 22..1557 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:34 Download gff for
BO31884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8123192..8123368 | 851..1027 | 100 | <- | Minus |
| X | 8121645..8122029 | 1173..1557 | 99 | <- | Minus |
| X | 8122370..8122514 | 1028..1172 | 100 | <- | Minus |
| X | 8126690..8126978 | 562..850 | 100 | <- | Minus |
| X | 8127061..8127600 | 22..561 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:56 Download gff for
BO31884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8015678..8016062 | 1173..1557 | 99 | <- | Minus |
| arm_X | 8016403..8016547 | 1028..1172 | 100 | <- | Minus |
| arm_X | 8017225..8017401 | 851..1027 | 100 | <- | Minus |
| arm_X | 8020723..8021011 | 562..850 | 100 | <- | Minus |
| arm_X | 8021094..8021633 | 22..561 | 100 | | Minus |
BO31884.pep Sequence
Translation from 16 to 1573
> BO31884.pep
MFSSSASAASTSFNLGQLLPLAIAIGVLHLPQFLCHAAWTTRTPESFIND
TTTTTTTTTTTTTKTMQIQAMQVNCSRELLEMHLELSRPFRGLLYAKDFP
LECRARGKDSTRLHLRIPTSGCGVRAEPLEDGSLEYTVRVMLQKEQKLRQ
STDILSSVRCQLPANAMGMPLPVLRQEKGHDRNARMRALAAAAAVPALGA
TSSINQQQRETPRVRIWLELGGPNGTGSVEVGVATTLTVRAIVPGNIGVR
VVDCAALDGLGESTQQLLDARGCPIDEQVMPALHTQHRPAEEGWSKQHEE
DLVERTFAATFPAFKFPDRERLHVSCGVQLCKGKCPTLNCRLKTPPPALS
AEQHLARIEVFNSLAVTAPQIEVDRLRYDRRHNMSGEDYAPHVRGQVMPG
EGTLCLSISKLAISFCVLGLIFLVAVVVAIFSLIRSRRRERRHGAGLSLG
LGVGLGIAGTSTSNSSSRLHRDRAEICTSMFSSSSESAQSQPRFGAKFLM
PYYPNTLPYGRVYASFLDH
BO31884.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cyr-PC | 513 | CG15335-PC | 1..513 | 1..513 | 2642 | 100 | Plus |
| cyr-PB | 513 | CG15335-PB | 1..513 | 1..513 | 2642 | 100 | Plus |
| cyr-PD | 454 | CG15335-PD | 1..454 | 1..513 | 1811 | 76.4 | Plus |
| pio-PE | 462 | CG3541-PE | 13..451 | 24..452 | 221 | 22.4 | Plus |
| pio-PD | 462 | CG3541-PD | 13..451 | 24..452 | 221 | 22.4 | Plus |
