BO31887.complete Sequence
2131 bp assembled on 2012-05-22
GenBank Submission: KX798679
> BO31887.complete
GAAGTTATCAGTCGACATGCCGGCGGAAATTAAACCATCCGCGCCCGCTG
AGCCGGAAACGCCGACCAAGAGCAAACCCAAGTCCAGCTCATCCTCGCAC
GGAAAGCCTGCCCTAGCACGAGTCACCCTGCTGGATGGCTCCCTTCTGGA
CGTGTCCATTGATCGCAAAGCCATTGGCCGTGATGTGATCAACTCAATCT
GCGCCGGTCTGAACCTCATCGAAAAGGACTACTTTGGTCTGACCTATGAG
ACGCCCACAGATCCGCGCACTTGGCTGGATCTGGAGAAGCCGGTATCCAA
GTTCTTCCGCACGGACACTTGGCCTCTCACCTTCGCCGTCAAGTTCTATC
CGCCGGAGCCATCGCAGCTGAAGGAGGACATCACGCGCTACCATTTGTGC
CTGCAGGTGCGCAATGACATCCTGGAGGGTCGACTGCCCTGCACATTCGT
CACCCACGCTCTGCTCGGATCCTACTTGGTGCAGTCGGAGATGGGCGACT
ACGATGCAGAGGAAATGCCCACCAGGGCCTACCTGAAGGACTTCAAGATC
GCTCCAAATCAGACGGCTGAGTTGGAGGATAAGGTCATGGATCTTCACAA
GACCCACAAGGGACAATCGCCCGCCGAGGCTGAGCTACACTACCTGGAGA
ATGCCAAGAAGCTGGCCATGTACGGCGTGGACTTGCATCCCGCTAAGGAT
TCTGAGGGCGTGGACATCATGCTGGGCGTTTGTGCCTCCGGTTTGCTCGT
CTACCGCGATAAATTGCGCATCAACCGCTTTGCCTGGCCCAAGATTCTGA
AGATCTCCTACAAGCGCCACCATTTCTACATCAAGATCCGACCGGGTGAA
TTCGAGCAGTACGAATCCACCATTGGCTTTAAGCTGGCCAACCATCGTGC
CGCCAAGAAACTGTGGAAATCCTGCGTGGAGCACCACACCTTCTTCCGCC
TGATGACCCCCGAACCGGTCAGCAAGTCCAAGATGTTCCCAGTCTTCGGG
TCCACCTATCGCTACAAGGGTCGCACTCAGGCCGAGAGCACGAACACACC
CGTGGATCGTACTCCTCCGAAGTTCAATAGGACTCTGTCCGGAGCTCGTC
TCACTTCCAGGAGCATGGATGCTCTGGCCTTGGCCGAAAAGGAAAAGGTG
GCTAGGAAGAGCAGCACCCTGGATCATCGGGGAGATCGCAATGCCGATGG
CGATGCCCACAGCCGCAGTCCCATCAAGAACAAGAAGGAGAAGGATGCTG
ATAAGGAGGCTAAGTTGCGTGAGAAGAAACAAAAGGAGAAGGAGGAGAAG
GAGCGAAAGGAGCGGGAGAAGCGGGAGTTGGAGGAGAAGAAGAAGGCCGA
AAAGGCTGCCAAGGCAGCACTTGCCGCTGGTGCCGCTGCAGGAGCGGCTG
TTAATGGCAATGACGAGCTGAATGATTCCAACAAGTCTGACAAGTCCTCA
GGCAGACGTGCTGATGCTACACCCACCGACCTGAGTGGCGCCTATGTCAC
GGCCACCGCAGTCACCACCCGCACCGCCACCACGCACGAGGATCTGGGCA
AGAACGCCAAGACGGAGCAGCTGGAGGAGAAGACGGTGGCCACCACCCGC
ACCCACGATCCCAACAAGCAGCAGCAGCGCGTCGTTACCCAGGAGGTGAA
GACGACGGCGACGGTCACCAGTGGGGATCAGTATCAGAGGAGGGATAGCG
TTTCCTCGACCAGTTCCGGCGATTCGGGCACGCCCATCGACGGACCCTAC
GATGGTGCCAGTGTGGTGCGCACAGATAACCAGAAATCTCCGCTGTTTAC
GACCTCCGCCACCACTGGACCCCATGTGGAAAGCACCCGAGTGGTTCTCG
GTGAGGACACACCCGGATTCTCCGGACATGGCGAAATCATCTCCACCCAA
ACCGTGAGCAGCAAAACCCGCACTGTGGAAACCATTACCTACAAAACCGA
ACGCGATGGCATTGTGGAGACCCGAGTGGAACAGAAGATAACCATTCAGT
CCGATGGAGATCCGATCGATCATGACAAAGCCTTGGCCGAGGCAATACAA
GAAGCGACGGCCATGAATCCGGACATGACAGTCGAGAAGATTGAAATTCA
GCAGCAAACGCAGGCAAGCTTTCTAGACCAT
BO31887.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cora-RE | 2100 | CG11949-PE | 1..2097 | 17..2113 | 10485 | 100 | Plus |
| cora-RG | 5091 | CG11949-PG | 1..1444 | 17..1460 | 7220 | 100 | Plus |
| cora-RA | 5097 | CG11949-PA | 1..1444 | 17..1460 | 7220 | 100 | Plus |
| cora-RG | 5091 | CG11949-PG | 4441..5088 | 1460..2113 | 3145 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:22:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cora-RE | 2902 | CG11949-RE | 372..2468 | 17..2113 | 10485 | 100 | Plus |
| cora-RG | 5893 | CG11949-RG | 372..1815 | 17..1460 | 7220 | 100 | Plus |
| cora-RA | 5899 | CG11949-RA | 372..1815 | 17..1460 | 7220 | 100 | Plus |
| cora-RG | 5893 | CG11949-RG | 4812..5459 | 1460..2113 | 3145 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19235763..19236209 | 164..610 | 2235 | 100 | Plus |
| 2R | 25286936 | 2R | 19236485..19236843 | 763..1121 | 1795 | 100 | Plus |
| 2R | 25286936 | 2R | 19242174..19242395 | 1460..1681 | 1110 | 100 | Plus |
| 2R | 25286936 | 2R | 19238150..19238315 | 1242..1407 | 830 | 100 | Plus |
| 2R | 25286936 | 2R | 19242701..19242859 | 1781..1939 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 19236267..19236419 | 610..762 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 19235516..19235662 | 17..163 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 19236941..19237064 | 1121..1244 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 19243069..19243180 | 1940..2051 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 19242482..19242585 | 1680..1783 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 19243250..19243317 | 2046..2113 | 325 | 98.5 | Plus |
| 2R | 25286936 | 2R | 19238381..19238435 | 1406..1460 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:22:15 has no hits.
BO31887.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-22 15:35:10 Download gff for
BO31887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cora-RE | 370..2466 | 17..2115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:04 Download gff for
BO31887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cora-RE | 372..2468 | 17..2115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:41:28 Download gff for
BO31887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cora-RE | 372..2468 | 17..2115 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:41:28 Download gff for
BO31887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19235516..19235662 | 17..163 | 100 | -> | Plus |
| 2R | 19235763..19236208 | 164..609 | 100 | -> | Plus |
| 2R | 19236267..19236419 | 610..762 | 100 | -> | Plus |
| 2R | 19236485..19236843 | 763..1121 | 100 | -> | Plus |
| 2R | 19236942..19237063 | 1122..1243 | 100 | -> | Plus |
| 2R | 19238152..19238314 | 1244..1406 | 100 | -> | Plus |
| 2R | 19238382..19238434 | 1407..1459 | 100 | -> | Plus |
| 2R | 19242174..19242395 | 1460..1681 | 100 | -> | Plus |
| 2R | 19242484..19242585 | 1682..1783 | 100 | -> | Plus |
| 2R | 19242704..19242859 | 1784..1939 | 100 | -> | Plus |
| 2R | 19243069..19243179 | 1940..2050 | 100 | -> | Plus |
| 2R | 19243255..19243317 | 2051..2115 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:04 Download gff for
BO31887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15129679..15129900 | 1460..1681 | 100 | -> | Plus |
| arm_2R | 15129989..15130090 | 1682..1783 | 100 | -> | Plus |
| arm_2R | 15130209..15130364 | 1784..1939 | 100 | -> | Plus |
| arm_2R | 15130574..15130684 | 1940..2050 | 100 | -> | Plus |
| arm_2R | 15130760..15130822 | 2051..2115 | 96 | | Plus |
| arm_2R | 15124447..15124568 | 1122..1243 | 100 | -> | Plus |
| arm_2R | 15125657..15125819 | 1244..1406 | 100 | -> | Plus |
| arm_2R | 15125887..15125939 | 1407..1459 | 100 | -> | Plus |
| arm_2R | 15123021..15123167 | 17..163 | 100 | -> | Plus |
| arm_2R | 15123268..15123713 | 164..609 | 100 | -> | Plus |
| arm_2R | 15123772..15123924 | 610..762 | 100 | -> | Plus |
| arm_2R | 15123990..15124348 | 763..1121 | 100 | -> | Plus |
BO31887.pep Sequence
Translation from 16 to 2131
> BO31887.pep
MPAEIKPSAPAEPETPTKSKPKSSSSSHGKPALARVTLLDGSLLDVSIDR
KAIGRDVINSICAGLNLIEKDYFGLTYETPTDPRTWLDLEKPVSKFFRTD
TWPLTFAVKFYPPEPSQLKEDITRYHLCLQVRNDILEGRLPCTFVTHALL
GSYLVQSEMGDYDAEEMPTRAYLKDFKIAPNQTAELEDKVMDLHKTHKGQ
SPAEAELHYLENAKKLAMYGVDLHPAKDSEGVDIMLGVCASGLLVYRDKL
RINRFAWPKILKISYKRHHFYIKIRPGEFEQYESTIGFKLANHRAAKKLW
KSCVEHHTFFRLMTPEPVSKSKMFPVFGSTYRYKGRTQAESTNTPVDRTP
PKFNRTLSGARLTSRSMDALALAEKEKVARKSSTLDHRGDRNADGDAHSR
SPIKNKKEKDADKEAKLREKKQKEKEEKERKEREKRELEEKKKAEKAAKA
ALAAGAAAGAAVNGNDELNDSNKSDKSSGRRADATPTDLSGAYVTATAVT
TRTATTHEDLGKNAKTEQLEEKTVATTRTHDPNKQQQRVVTQEVKTTATV
TSGDQYQRRDSVSSTSSGDSGTPIDGPYDGASVVRTDNQKSPLFTTSATT
GPHVESTRVVLGEDTPGFSGHGEIISTQTVSSKTRTVETITYKTERDGIV
ETRVEQKITIQSDGDPIDHDKALAEAIQEATAMNPDMTVEKIEIQQQTQA
SFLDH
BO31887.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cora-PE | 699 | CG11949-PE | 1..699 | 1..699 | 3603 | 100 | Plus |
| cora-PC | 703 | CG11949-PC | 1..703 | 1..699 | 3333 | 90.2 | Plus |
| cora-PG | 1696 | CG11949-PG | 1..481 | 1..481 | 2503 | 100 | Plus |
| cora-PA | 1698 | CG11949-PA | 1..481 | 1..481 | 2503 | 100 | Plus |
| cora-PB | 889 | CG11949-PB | 1..688 | 1..647 | 2499 | 73.6 | Plus |
| cora-PA | 1698 | CG11949-PA | 1480..1698 | 481..699 | 1102 | 99.5 | Plus |
| cora-PG | 1696 | CG11949-PG | 1480..1696 | 481..699 | 1077 | 98.6 | Plus |
