Clone BO31888 Report

Search the DGRC for BO31888

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:318
Well:88
Vector:pDNR-Dual
Associated Gene/Transcripttmod-RA
Protein status:BO31888.pep: Imported from assembly
Sequenced Size:1135

Clone Sequence Records

BO31888.complete Sequence

1135 bp assembled on 2012-04-25

GenBank Submission: KX799964

> BO31888.complete
GAAGTTATCAGTCGACATGGAGACTTCTGCCACCACAAAGACAACCACGC
TCACCACCCCCGCCAAACTGTATGGCAAGGATCTGAGTGAGTACGATGAT
GTGGATGTGGAGAGCCTGCTGGCCCAGCTCTCCCCCGAGGAGATAACCAT
ACTGGCCAAAGAAGTGGATCCCGATGACAACTTCCTGCCGCCAGACCAGC
GCAATAGCTATGAGTGCACCAAGGAAGCCACCGGGCCTCTCAATCGCAAG
CAGCTGATCGAGCACATCAATAAGCAGGCCATCGAGACCCCGGATCAGCC
GGAGTTCGAGCCGTTCGTTCAGGGCAAGGTTCGTGGAAAGAAGTGGGTCC
CACCGCCAAGGGATGCCCGCGACATCGAGGCCGAAGAACAAATCGCCATT
GACATGGGCGAGGAGTACGAACACGCCCTTAACGATGCCACGCAGGAGGA
GATCATCGATCTGGCCGCCATCCTCGGCTTCCACTCGATGATGAATCAGG
ACCAGTACCACGCCTCCTTGCTCAACAAGGGTCAGCCCGTGGGCCTGGGA
TGGGATGGCATTACGAAATCCACTCAGCAGAAGCTCTTCCCTATGGATCC
GCCCAACAACACAGATGTGGAGGAATCCATCAAGCGGGTCAAGGACGATG
ACTCCAAGCTGATTGACCTCAACTTGAACAACATTAAGAACATCTCGGAC
GAGAAACTCGAGCAACTGTTTGCCGCACTGCCTCAGAACGAACATTTGGA
AGTCCTCTCGCTAACAAATGTGGGCCTCACCGACAAGACAGCCCTCCTGT
TAGCCGCGGCCATAGAGAAGAGCAAAACCCTGAGAGTATTAAATGTCGAG
ACCAACTTTATCAGTCCGCCCGTGATTGTTAAGTTGGTGCAAGCCCTGCT
CAAGTGCCACACCATCGAGGAGTTTAGGGCCTCCAATCAGCGGTCTGCGG
TTCTGGGCAACAAGATCGAGATGGAAATCACCGACCTGGTGGAGAAGAAC
TCGTCGCTGCTGCGCCTTGGCTTGCACCTGGAGTTCAACGACGCCCGCCA
CCGAGTGGCCGCTCACCTGCAGCGCAACATCGACAGAATACGTGTGAAAC
GCCTGAACCAGCGTAAAGCAAGCTTTCTAGACCAT

BO31888.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
tmod-RA 1104 CG1539-PA 1..1101 17..1117 5505 100 Plus
tmod-RI 1320 CG1539-PI 220..1317 20..1117 5490 100 Plus
tmod-RL 1320 CG1539-PL 220..1317 20..1117 5490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
tmod-RA 2537 CG1539-RA 295..1397 15..1117 5515 100 Plus
tmod-RI 3000 CG1539-RI 763..1860 20..1117 5490 100 Plus
tmod-RL 2662 CG1539-RL 425..1522 20..1117 5490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30572023..30572535 176..688 2565 100 Plus
3R 32079331 3R 30572597..30572850 687..940 1270 100 Plus
3R 32079331 3R 30571807..30571962 21..176 780 100 Plus
3R 32079331 3R 30572922..30573072 938..1088 755 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:37:22 has no hits.

BO31888.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:22 Download gff for BO31888.complete
Subject Subject Range Query Range Percent Splice Strand
tmod-RA 305..1405 17..1119 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:09 Download gff for BO31888.complete
Subject Subject Range Query Range Percent Splice Strand
tmod-RA 297..1397 17..1119 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:00:25 Download gff for BO31888.complete
Subject Subject Range Query Range Percent Splice Strand
tmod-RA 297..1397 17..1119 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:00:25 Download gff for BO31888.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30571803..30571961 17..175 98 -> Plus
3R 30572023..30572535 176..688 100 -> Plus
3R 30572599..30572850 689..940 100 -> Plus
3R 30572925..30573072 941..1088 100 -> Plus
3R 30577179..30577207 1089..1119 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:09 Download gff for BO31888.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26398647..26398794 941..1088 100 -> Plus
arm_3R 26402901..26402929 1089..1119 93   Plus
arm_3R 26397525..26397683 17..175 98 -> Plus
arm_3R 26397745..26398257 176..688 100 -> Plus
arm_3R 26398321..26398572 689..940 100 -> Plus

BO31888.pep Sequence

Translation from 16 to 1135

> BO31888.pep
METSATTKTTTLTTPAKLYGKDLSEYDDVDVESLLAQLSPEEITILAKEV
DPDDNFLPPDQRNSYECTKEATGPLNRKQLIEHINKQAIETPDQPEFEPF
VQGKVRGKKWVPPPRDARDIEAEEQIAIDMGEEYEHALNDATQEEIIDLA
AILGFHSMMNQDQYHASLLNKGQPVGLGWDGITKSTQQKLFPMDPPNNTD
VEESIKRVKDDDSKLIDLNLNNIKNISDEKLEQLFAALPQNEHLEVLSLT
NVGLTDKTALLLAAAIEKSKTLRVLNVETNFISPPVIVKLVQALLKCHTI
EEFRASNQRSAVLGNKIEMEITDLVEKNSSLLRLGLHLEFNDARHRVAAH
LQRNIDRIRVKRLNQRKASFLDH

BO31888.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
tmod-PA 367 CG1539-PA 1..367 1..367 1870 100 Plus
tmod-PI 439 CG1539-PI 74..439 2..367 1865 100 Plus
tmod-PL 439 CG1539-PL 74..439 2..367 1865 100 Plus
tmod-PE 439 CG1539-PE 74..439 2..367 1865 100 Plus
tmod-PH 372 CG1539-PH 8..372 3..367 1860 100 Plus