Clone BO31914 Report

Search the DGRC for BO31914

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:319
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptScr-RA
Protein status:BO31914.pep: Imported from assembly
Sequenced Size:1285

Clone Sequence Records

BO31914.complete Sequence

1285 bp assembled on 2012-10-18

GenBank Submission: KX796865

> BO31914.complete
GAAGTTATCAGTCGACATGGATCCCGACTGTTTTGCGATGTCCTCGTACC
AGTTCGTCAACTCGCTGGCCTCCTGTTATCCGCAGCAGATGAATCCGCAG
CAGAATCACCCGGGAGCGGGAAATTCGAGTGCAGGCGGCAGCGGTGGAGG
GGCGGGCGGTAGCGGGGGCGTGGTGCCCAGCGGCGGAACGAACGGCGGTC
AGGGCAGTGCGGGGGCGGCCACTCCGGGGGCGAACGACTACTTCCCAGCC
GCGGCGGCCTATACGCCTAACCTGTATCCAAACACACCGCAGGCCCACTA
CGCCAATCAGGCGGCCTACGGCGGACAGGGAAATCCGGATATGGTGGACT
ACACGCAGCTACAGCCGCAGCGACTGCTCCTGCAGCAGCAGCAGCAACAG
CAACAGCAGCAACATGCCCATGCAGCGGCAGCAGTTGCTGCCCAGCAGCA
GCAGCAACTCGCCCAGCAGCAACACCCGCAACAGCAGCAACAGCAGCAGC
AGGCGAACATCAGTTGCAAGTACGCCAACGATCCAGTGACGCCGGGCGGA
AGTGGGGGCGGGGGTGTTTCCGGTAGCAACAACAATAACAATAGCGCCAA
CAGCAACAACAACAACAGCCAGTCGCTAGCCAGTCCACAGGATCTGTCCA
CCAGGGACATATCGCCCAAACTGTCGCCCAGCTCAGTGGTAGAGAGTGTG
GCCCGATCGCTGAACAAGGGCGTCCTGGGCGGAAGCTTGGCGGCCGCCGC
TGCCGCCGCCGGCTTGAACAACAACCACAGCGGATCGGGAGTGTCCGGAG
GACCTGGAAACGTCAATGTTCCCATGCACAGTCCGGGGGGCGGGGATTCG
GACTCCGAGAGCGATAGCGGCAATGAGGCGGGCAGTAGCCAGAACAGCGG
CAATGGAAAGAAGAACCCGCCGCAGATATATCCGTGGATGAAGCGAGTAC
ATCTCGGGACGAGTACTGTGAATGCCAATGGCGAGACGAAACGACAACGG
ACCTCATACACCCGCTACCAGACGCTGGAGCTGGAGAAGGAGTTCCACTT
CAACCGCTACCTGACCCGCCGCCGCAGAATCGAGATCGCGCATGCCCTGT
GTCTCACGGAGCGGCAGATCAAGATCTGGTTCCAGAACCGGCGCATGAAG
TGGAAGAAGGAGCACAAGATGGCCTCGATGAACATCGTACCCTACCACAT
GGGTCCATATGGCCACCCGTACCACCAGTTCGATATCCATCCGTCGCAGT
TCGCGCACCTAAGCGCAGCAAGCTTTCTAGACCAT

BO31914.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
Scr-RB 1254 CG1030-PB 1..1251 17..1267 6255 100 Plus
Scr-RA 1254 CG1030-PA 1..1251 17..1267 6255 100 Plus
Antp-RK 1086 CG1028-PK 857..1021 1005..1169 540 88.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
Scr-RB 3987 CG1030-RB 472..1722 17..1267 6255 100 Plus
Scr-RA 4140 CG1030-RA 625..1875 17..1267 6255 100 Plus
Antp-RK 4851 CG1028-RK 2587..2751 1005..1169 540 88.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6841233..6842180 964..17 4740 100 Minus
3R 32079331 3R 6825385..6825689 1267..963 1525 100 Minus
3R 32079331 3R 6898353..6898517 1169..1005 540 88.5 Minus
3R 32079331 3R 16658883..16659040 1162..1005 490 87.3 Minus
3R 32079331 3R 6801011..6801190 989..1168 450 83.3 Plus
3R 32079331 3R 6865321..6865475 1007..1161 400 83.9 Plus
3R 32079331 3R 16810162..16810317 1162..1007 390 83.3 Minus
Blast to na_te.dros performed 2014-11-28 12:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 613..725 231..126 126 60.2 Minus

BO31914.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-18 15:59:05 Download gff for BO31914.complete
Subject Subject Range Query Range Percent Splice Strand
Scr-RB 472..1722 17..1269 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:11 Download gff for BO31914.complete
Subject Subject Range Query Range Percent Splice Strand
Scr-RA 625..1875 17..1269 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:16 Download gff for BO31914.complete
Subject Subject Range Query Range Percent Splice Strand
Scr-RA 625..1875 17..1269 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:16 Download gff for BO31914.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6825383..6825689 963..1269 99 <- Minus
3R 6841235..6842180 17..962 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:11 Download gff for BO31914.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2651105..2651411 963..1269 99 <- Minus
arm_3R 2666957..2667902 17..962 100   Minus

BO31914.pep Sequence

Translation from 16 to 1285

> BO31914.pep
MDPDCFAMSSYQFVNSLASCYPQQMNPQQNHPGAGNSSAGGSGGGAGGSG
GVVPSGGTNGGQGSAGAATPGANDYFPAAAAYTPNLYPNTPQAHYANQAA
YGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAAAAVAAQQQQQLAQ
QQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNNNN
SQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGL
NNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKN
PPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLT
RRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVPYHMGPYGH
PYHQFDIHPSQFAHLSAASFLDH

BO31914.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Scr-PB 417 CG1030-PB 1..417 1..417 2226 100 Plus
Scr-PA 417 CG1030-PA 1..417 1..417 2226 100 Plus
Antp-PJ 378 CG1028-PJ 109..357 117..384 405 41.2 Plus
Antp-PI 378 CG1028-PI 109..357 117..384 405 41.2 Plus
Antp-PL 378 CG1028-PL 109..357 117..384 405 41.2 Plus